Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:01:50 (3410832): wrapper (7.7.26015): starting
20:01:50 (3410832): wrapper: running run_atlas (--nthreads 12)
[2026-03-23 20:01:50] Arguments: --nthreads 12
[2026-03-23 20:01:50] Threads: 12
[2026-03-23 20:01:50] Checking for CVMFS
[2026-03-23 20:01:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-23 20:01:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-23 20:01:50] Running cvmfs_config stat atlas.cern.ch
[2026-03-23 20:01:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-23 20:01:50] 2.13.3.0 8759 127193 243728 157623 2 252 33998369 40960000 7641 16776704 0 1027604898 99.704 824376778 43834 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-23 20:01:50] CVMFS is ok
[2026-03-23 20:01:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-23 20:01:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-23 20:01:50] Further information can be found at the LHC@home message board.
[2026-03-23 20:01:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-23 20:01:50] Checking for apptainer binary...
[2026-03-23 20:01:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-23 20:01:50] Running /usr/bin/apptainer --version
[2026-03-23 20:01:50] apptainer version 1.4.5-2.el9
[2026-03-23 20:01:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-23 20:01:50] c-208-39.aglt2.org
[2026-03-23 20:01:50] apptainer works
[2026-03-23 20:01:50] Set ATHENA_PROC_NUMBER=12
[2026-03-23 20:01:50] Set ATHENA_CORE_NUMBER=12
[2026-03-23 20:01:50] Starting ATLAS job with PandaID=7063251407
[2026-03-23 20:01:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-23 20:52:36]  *** The last 200 lines of the pilot log: ***
[2026-03-23 20:52:36]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-23 20:52:36]  is_altstaged=None
[2026-03-23 20:52:36]  is_tar=False
[2026-03-23 20:52:36]  lfn=log.49273518._000071.job.log.tgz.1
[2026-03-23 20:52:36]  mtime=0
[2026-03-23 20:52:36]  protocol_id=None
[2026-03-23 20:52:36]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-23 20:52:36]  replicas=None
[2026-03-23 20:52:36]  scope=mc23_13p6TeV
[2026-03-23 20:52:36]  status=None
[2026-03-23 20:52:36]  status_code=0
[2026-03-23 20:52:36]  storage_token=
[2026-03-23 20:52:36]  surl=/tmp/boinchome/slots/9/PanDA_Pilot-7063251407/log.49273518._000071.job.log.tgz.1
[2026-03-23 20:52:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/87/16/log.49273518._000071.job.log.tgz.1
[2026-03-23 20:52:36]  workdir=None
[2026-03-23 20:52:36] ]
[2026-03-23 20:52:36] 2026-03-24 00:52:02,165 | INFO     | transferring file log.49273518._000071.job.log.tgz.1 from /tmp/boinchome/slots/9/PanDA_Pilot-7063251407/log.49273518._000071.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-03-23 20:52:36] 2026-03-24 00:52:02,165 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/9/PanDA_Pilot-7063251407/log.49273518._000071.job.log.tgz.1 /tmp/boinchome/slots/9/log.49273518._000071.job
[2026-03-23 20:52:36] 2026-03-24 00:52:02,179 | INFO     | adding to output.list: log.49273518._000071.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/87/16/log.49273518._000071.job.log.tg
[2026-03-23 20:52:36] 2026-03-24 00:52:02,179 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-23 20:52:36] 2026-03-24 00:52:02,180 | INFO     | summary of transferred files:
[2026-03-23 20:52:36] 2026-03-24 00:52:02,180 | INFO     |  -- lfn=log.49273518._000071.job.log.tgz.1, status_code=0, status=transferred
[2026-03-23 20:52:36] 2026-03-24 00:52:02,180 | INFO     | stage-out finished correctly
[2026-03-23 20:52:36] 2026-03-24 00:52:02,234 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-23 20:52:36] 2026-03-24 00:52:02,680 | INFO     | time since job start (2998s) is within the limit (345600.0s)
[2026-03-23 20:52:36] 2026-03-24 00:52:03,152 | INFO     | job 7063251407 has state=finished
[2026-03-23 20:52:36] 2026-03-24 00:52:03,153 | INFO     | preparing for final server update for job 7063251407 in state='finished'
[2026-03-23 20:52:36] 2026-03-24 00:52:03,153 | INFO     | reading metadata from: /tmp/boinchome/slots/9/PanDA_Pilot-7063251407/jobReport.json
[2026-03-23 20:52:36] 2026-03-24 00:52:03,155 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/9/workernode_map.json
[2026-03-23 20:52:36] 2026-03-24 00:52:03,155 | INFO     | this job has now completed (state=finished)
[2026-03-23 20:52:36] 2026-03-24 00:52:03,155 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-23 20:52:36] 2026-03-24 00:52:03,155 | INFO     | log transfer has been attempted: DONE
[2026-03-23 20:52:36] 2026-03-24 00:52:03,155 | INFO     | job 7063251407 has finished - writing final server update
[2026-03-23 20:52:36] 2026-03-24 00:52:03,155 | INFO     | total number of processed events: 400 (read)
[2026-03-23 20:52:36] 2026-03-24 00:52:03,168 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-7063251407/memory_monitor_summary.json (trf name=prmon)
[2026-03-23 20:52:36] 2026-03-24 00:52:03,169 | INFO     | extracted standard info from prmon json
[2026-03-23 20:52:36] 2026-03-24 00:52:03,169 | INFO     | extracted standard memory fields from prmon json
[2026-03-23 20:52:36] 2026-03-24 00:52:03,169 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-23 20:52:36] 2026-03-24 00:52:03,169 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-23 20:52:36] 2026-03-24 00:52:03,169 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-23 20:52:36] 2026-03-24 00:52:03,170 | INFO     | fitting pss+swap vs Time
[2026-03-23 20:52:36] 2026-03-24 00:52:03,170 | INFO     | sum of square deviations: 22960430.5
[2026-03-23 20:52:36] 2026-03-24 00:52:03,170 | INFO     | sum of deviations: 263070155.5
[2026-03-23 20:52:36] 2026-03-24 00:52:03,170 | INFO     | mean x: 1774312102.5
[2026-03-23 20:52:36] 2026-03-24 00:52:03,170 | INFO     | mean y: 2717291.5
[2026-03-23 20:52:36] 2026-03-24 00:52:03,170 | INFO     | intersect: -20326542680.790455
[2026-03-23 20:52:36] 2026-03-24 00:52:03,170 | INFO     | chi2: 0.0017917014147737318
[2026-03-23 20:52:36] 2026-03-24 00:52:03,170 | INFO     | current memory leak: 11.46 B/s (using 42 data points, chi2=0.00)
[2026-03-23 20:52:36] 2026-03-24 00:52:03,171 | INFO     | could have reported an average CPU frequency of 3670 MHz (5 samples)
[2026-03-23 20:52:36] 2026-03-24 00:52:03,171 | INFO     | ..............................
[2026-03-23 20:52:36] 2026-03-24 00:52:03,171 | INFO     | . Timing measurements:
[2026-03-23 20:52:36] 2026-03-24 00:52:03,171 | INFO     | . get job = 0 s
[2026-03-23 20:52:36] 2026-03-24 00:52:03,171 | INFO     | . initial setup = 5 s
[2026-03-23 20:52:36] 2026-03-24 00:52:03,171 | INFO     | . payload setup = 7 s
[2026-03-23 20:52:36] 2026-03-24 00:52:03,171 | INFO     | . stage-in = 0 s
[2026-03-23 20:52:36] 2026-03-24 00:52:03,171 | INFO     | . payload execution = 2975 s
[2026-03-23 20:52:36] 2026-03-24 00:52:03,171 | INFO     | . stage-out = 0 s
[2026-03-23 20:52:36] 2026-03-24 00:52:03,171 | INFO     | . log creation = 0 s
[2026-03-23 20:52:36] 2026-03-24 00:52:03,171 | INFO     | ..............................
[2026-03-23 20:52:36] 2026-03-24 00:52:03,225 | INFO     | 
[2026-03-23 20:52:36] 2026-03-24 00:52:03,226 | INFO     | job summary report
[2026-03-23 20:52:36] 2026-03-24 00:52:03,226 | INFO     | --------------------------------------------------
[2026-03-23 20:52:36] 2026-03-24 00:52:03,226 | INFO     | PanDA job id: 7063251407
[2026-03-23 20:52:36] 2026-03-24 00:52:03,226 | INFO     | task id: 49273518
[2026-03-23 20:52:36] 2026-03-24 00:52:03,226 | INFO     | errors: (none)
[2026-03-23 20:52:36] 2026-03-24 00:52:03,226 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-23 20:52:36] 2026-03-24 00:52:03,226 | INFO     | pilot state: finished 
[2026-03-23 20:52:36] 2026-03-24 00:52:03,226 | INFO     | transexitcode: 0
[2026-03-23 20:52:36] 2026-03-24 00:52:03,226 | INFO     | exeerrorcode: 0
[2026-03-23 20:52:36] 2026-03-24 00:52:03,226 | INFO     | exeerrordiag: 
[2026-03-23 20:52:36] 2026-03-24 00:52:03,226 | INFO     | exitcode: 0
[2026-03-23 20:52:36] 2026-03-24 00:52:03,226 | INFO     | exitmsg: OK
[2026-03-23 20:52:36] 2026-03-24 00:52:03,226 | INFO     | cpuconsumptiontime: 32559 s
[2026-03-23 20:52:36] 2026-03-24 00:52:03,226 | INFO     | nevents: 400
[2026-03-23 20:52:36] 2026-03-24 00:52:03,226 | INFO     | neventsw: 0
[2026-03-23 20:52:36] 2026-03-24 00:52:03,226 | INFO     | pid: 3419070
[2026-03-23 20:52:36] 2026-03-24 00:52:03,226 | INFO     | pgrp: 3419070
[2026-03-23 20:52:36] 2026-03-24 00:52:03,226 | INFO     | corecount: 12
[2026-03-23 20:52:36] 2026-03-24 00:52:03,226 | INFO     | event service: False
[2026-03-23 20:52:36] 2026-03-24 00:52:03,226 | INFO     | sizes: {0: 2280034, 1: 2280324, 11: 2280324, 2986: 2305824, 2987: 2314878, 2988: 2315048}
[2026-03-23 20:52:36] 2026-03-24 00:52:03,226 | INFO     | --------------------------------------------------
[2026-03-23 20:52:36] 2026-03-24 00:52:03,226 | INFO     | 
[2026-03-23 20:52:36] 2026-03-24 00:52:03,226 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2026-03-23 20:52:36] 2026-03-24 00:52:03,247 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-23 20:52:36] 2026-03-24 00:52:03,247 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-23 20:52:36] 2026-03-24 00:52:03,247 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-23 20:52:36] 2026-03-24 00:52:03,247 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-23 20:52:36] 2026-03-24 00:52:03,247 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-23 20:52:36] 2026-03-24 00:52:03,247 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-23 20:52:36] 2026-03-24 00:52:03,247 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-23 20:52:36] 2026-03-24 00:52:03,247 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-23 20:52:36] 2026-03-24 00:52:03,247 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-23 20:52:36] 2026-03-24 00:52:03,248 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-23 20:52:36] 2026-03-24 00:52:03,248 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-23 20:52:36] 2026-03-24 00:52:03,248 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-23 20:52:36] 2026-03-24 00:52:03,248 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-23 20:52:36] 2026-03-24 00:52:03,248 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-23 20:52:36] 2026-03-24 00:52:03,248 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-23 20:52:36] 2026-03-24 00:52:03,248 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-23 20:52:36] 2026-03-24 00:52:03,248 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-23 20:52:36] 2026-03-24 00:52:03,248 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-23 20:52:36] 2026-03-24 00:52:03,248 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-23 20:52:36] 2026-03-24 00:52:03,248 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-23 20:52:36] 2026-03-24 00:52:03,248 | INFO     | job 7063251407 has completed (purged errors)
[2026-03-23 20:52:36] 2026-03-24 00:52:03,248 | INFO     | overall cleanup function is called
[2026-03-23 20:52:36] 2026-03-24 00:52:04,252 | INFO     | --- collectZombieJob: --- 10, [3419070]
[2026-03-23 20:52:36] 2026-03-24 00:52:04,253 | INFO     | zombie collector waiting for pid 3419070
[2026-03-23 20:52:36] 2026-03-24 00:52:04,253 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-23 20:52:36] 2026-03-24 00:52:04,253 | INFO     | collected zombie processes
[2026-03-23 20:52:36] 2026-03-24 00:52:04,253 | INFO     | will attempt to kill all subprocesses of pid=3419070
[2026-03-23 20:52:36] 2026-03-24 00:52:04,628 | INFO     | process IDs to be killed: [3419070] (in reverse order)
[2026-03-23 20:52:36] 2026-03-24 00:52:04,764 | WARNING  | found no corresponding commands to process id(s)
[2026-03-23 20:52:36] 2026-03-24 00:52:04,764 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-23 20:52:36] 2026-03-24 00:52:04,783 | INFO     | did not find any defunct processes belonging to 3419070
[2026-03-23 20:52:36] 2026-03-24 00:52:04,799 | INFO     | did not find any defunct processes belonging to 3419070
[2026-03-23 20:52:36] 2026-03-24 00:52:04,800 | INFO     | ready for new job
[2026-03-23 20:52:36] 2026-03-24 00:52:04,800 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-23 20:52:36] 2026-03-24 00:52:04,801 | INFO     | **************************************
[2026-03-23 20:52:36] 2026-03-24 00:52:04,801 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-23 20:52:36] 2026-03-24 00:52:04,801 | INFO     | **************************************
[2026-03-23 20:52:36] 2026-03-24 00:52:04,801 | INFO     | 
[2026-03-23 20:52:36] 2026-03-24 00:52:04,806 | INFO     | architecture information:
[2026-03-23 20:52:36] 2026-03-24 00:52:04,806 | INFO     | executing command: cat /etc/os-release
[2026-03-23 20:52:36] 2026-03-24 00:52:04,821 | INFO     | cat /etc/os-release:
[2026-03-23 20:52:36] NAME="CentOS Linux"
[2026-03-23 20:52:36] VERSION="7 (Core)"
[2026-03-23 20:52:36] ID="centos"
[2026-03-23 20:52:36] ID_LIKE="rhel fedora"
[2026-03-23 20:52:36] VERSION_ID="7"
[2026-03-23 20:52:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-23 20:52:36] ANSI_COLOR="0;31"
[2026-03-23 20:52:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-23 20:52:36] HOME_URL="https://www.centos.org/"
[2026-03-23 20:52:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-23 20:52:36] 
[2026-03-23 20:52:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-23 20:52:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-23 20:52:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-23 20:52:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-23 20:52:36] 
[2026-03-23 20:52:36] 2026-03-24 00:52:04,822 | INFO     | **************************************
[2026-03-23 20:52:36] 2026-03-24 00:52:05,325 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2026-03-23 20:52:36] 2026-03-24 00:52:05,338 | INFO     | sufficient remaining disk space (168209416192 B)
[2026-03-23 20:52:36] 2026-03-24 00:52:05,339 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-23 20:52:36] 2026-03-24 00:52:05,339 | INFO     | current server update state: UPDATING_FINAL
[2026-03-23 20:52:36] 2026-03-24 00:52:05,339 | INFO     | update_server=False
[2026-03-23 20:52:36] 2026-03-24 00:52:05,339 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-23 20:52:36] 2026-03-24 00:52:05,339 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-23 20:52:36] 2026-03-24 00:52:05,342 | INFO     | all data control threads have been joined
[2026-03-23 20:52:36] 2026-03-24 00:52:05,944 | INFO     | all payload control threads have been joined
[2026-03-23 20:52:36] 2026-03-24 00:52:06,124 | INFO     | all job control threads have been joined
[2026-03-23 20:52:36] 2026-03-24 00:52:06,340 | INFO     | [job] retrieve thread has finished
[2026-03-23 20:52:36] 2026-03-24 00:52:06,346 | INFO     | [data] control thread has finished
[2026-03-23 20:52:36] 2026-03-24 00:52:06,363 | INFO     | [payload] failed_post thread has finished
[2026-03-23 20:52:36] 2026-03-24 00:52:06,595 | INFO     | [job] validate thread has finished
[2026-03-23 20:52:36] 2026-03-24 00:52:06,697 | INFO     | [job] create_data_payload thread has finished
[2026-03-23 20:52:36] 2026-03-24 00:52:06,761 | INFO     | [payload] validate_pre thread has finished
[2026-03-23 20:52:36] 2026-03-24 00:52:06,950 | INFO     | [payload] control thread has finished
[2026-03-23 20:52:36] 2026-03-24 00:52:06,966 | INFO     | [data] copytool_in thread has finished
[2026-03-23 20:52:36] 2026-03-24 00:52:07,052 | INFO     | [payload] execute_payloads thread has finished
[2026-03-23 20:52:36] 2026-03-24 00:52:07,129 | INFO     | [job] control thread has finished
[2026-03-23 20:52:36] 2026-03-24 00:52:07,189 | INFO     | job.realtimelogging is not enabled
[2026-03-23 20:52:36] 2026-03-24 00:52:07,345 | INFO     | [data] copytool_out thread has finished
[2026-03-23 20:52:36] 2026-03-24 00:52:07,418 | INFO     | [payload] validate_post thread has finished
[2026-03-23 20:52:36] 2026-03-24 00:52:08,195 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-23 20:52:36] 2026-03-24 00:52:08,236 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-23 20:52:36] 2026-03-24 00:52:08,292 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-23 20:52:36] 2026-03-24 00:52:08,442 | WARNING  | process 3419070 can no longer be monitored (due to stat problems) - aborting
[2026-03-23 20:52:36] 2026-03-24 00:52:08,672 | INFO     | [monitor] cgroup control has ended
[2026-03-23 20:52:36] 2026-03-24 00:52:08,728 | INFO     | using path: /tmp/boinchome/slots/9/memory_monitor_summary.json (trf name=prmon)
[2026-03-23 20:52:36] 2026-03-24 00:52:09,112 | INFO     | number of running child processes to parent process 3419070: 1
[2026-03-23 20:52:36] 2026-03-24 00:52:09,113 | INFO     | maximum number of monitored processes: 6
[2026-03-23 20:52:36] 2026-03-24 00:52:09,113 | INFO     | aborting job monitoring since job object (job id=7063251407) has expired
[2026-03-23 20:52:36] 2026-03-24 00:52:09,113 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-23 20:52:36] 2026-03-24 00:52:09,113 | INFO     | will abort loop
[2026-03-23 20:52:36] 2026-03-24 00:52:09,242 | INFO     | [job] queue monitor thread has finished
[2026-03-23 20:52:36] 2026-03-24 00:52:10,118 | INFO     | [job] job monitor thread has finished
[2026-03-23 20:52:36] 2026-03-24 00:52:12,298 | INFO     | [data] queue_monitor thread has finished
[2026-03-23 20:52:36] 2026-03-24 00:52:13,939 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139965466281792)>', '<ExcThread(monitor, started 139965115651840)>']
[2026-03-23 20:52:36] 2026-03-24 00:52:18,964 | INFO     | all workflow threads have been joined
[2026-03-23 20:52:36] 2026-03-24 00:52:18,964 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-23 20:52:36] 2026-03-24 00:52:18,965 | INFO     | traces error code: 0
[2026-03-23 20:52:36] 2026-03-24 00:52:18,965 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-23 20:52:36] 2026-03-24 00:52:36,223 | INFO     | PID=3414543 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-23 20:52:36] 2026-03-24 00:52:36,224 | INFO     | .. there are 10 such processes running
[2026-03-23 20:52:36] 2026-03-24 00:52:36,224 | INFO     | found 0 job(s) in 20 queues
[2026-03-23 20:52:36] 2026-03-24 00:52:36,224 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-23 20:52:36] 2026-03-24 00:52:36,224 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-23 20:52:36] 2026-03-24 00:52:36,224 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-23 20:52:36] 2026-03-24 00:52:36,224 | INFO     | [monitor] control thread has ended
[2026-03-23 20:52:36] 2026-03-24 00:52:36,318 [wrapper] ==== pilot stdout END ====
[2026-03-23 20:52:36] 2026-03-24 00:52:36,321 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-23 20:52:36] 2026-03-24 00:52:36,324 [wrapper] pilotpid: 3414543
[2026-03-23 20:52:36] 2026-03-24 00:52:36,326 [wrapper] Pilot exit status: 0
[2026-03-23 20:52:36] 2026-03-24 00:52:36,336 [wrapper] pandaids: 7063251407
[2026-03-23 20:52:36] 2026-03-24 00:52:36,429 [wrapper] cleanup supervisor_pilot 3569081 3414544
[2026-03-23 20:52:36] 2026-03-24 00:52:36,432 [wrapper] Test setup, not cleaning
[2026-03-23 20:52:36] 2026-03-24 00:52:36,434 [wrapper] apfmon messages muted
[2026-03-23 20:52:36] 2026-03-24 00:52:36,435 [wrapper] ==== wrapper stdout END ====
[2026-03-23 20:52:36] 2026-03-24 00:52:36,437 [wrapper] ==== wrapper stderr END ====
[2026-03-23 20:52:36]  *** Error codes and diagnostics ***
[2026-03-23 20:52:36]     "exeErrorCode": 0,
[2026-03-23 20:52:36]     "exeErrorDiag": "",
[2026-03-23 20:52:36]     "pilotErrorCode": 0,
[2026-03-23 20:52:36]     "pilotErrorDiag": "",
[2026-03-23 20:52:36]  *** Listing of results directory ***
[2026-03-23 20:52:36] total 459620
[2026-03-23 20:52:36] -rwx------. 1 boincer umatlas     36322 Mar 23 09:55 runpilot2-wrapper.sh
[2026-03-23 20:52:36] -rw-r--r--. 1 boincer umatlas      5111 Mar 23 09:57 queuedata.json
[2026-03-23 20:52:36] -rw-r--r--. 1 boincer umatlas    585013 Mar 23 09:58 pilot3.tar.gz
[2026-03-23 20:52:36] -rw-r--r--. 1 boincer umatlas       100 Mar 23 20:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-23 20:52:36] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 23 20:01 run_atlas
[2026-03-23 20:52:36] -rw-r--r--. 1 boincer umatlas       105 Mar 23 20:01 job.xml
[2026-03-23 20:52:36] -rw-r--r--. 2 boincer umatlas 252469627 Mar 23 20:01 EVNT.49130200._000001.pool.root.1
[2026-03-23 20:52:36] -rw-r--r--. 2 boincer umatlas     15845 Mar 23 20:01 start_atlas.sh
[2026-03-23 20:52:36] drwxrwx--x. 2 boincer umatlas      4096 Mar 23 20:01 shared
[2026-03-23 20:52:36] -rw-r--r--. 2 boincer umatlas    597539 Mar 23 20:01 input.tar.gz
[2026-03-23 20:52:36] -rw-r--r--. 1 boincer umatlas         0 Mar 23 20:01 boinc_lockfile
[2026-03-23 20:52:36] -rw-r--r--. 1 boincer umatlas      2614 Mar 23 20:01 pandaJob.out
[2026-03-23 20:52:36] -rw-------. 1 boincer umatlas        57 Mar 23 20:01 setup.sh.local
[2026-03-23 20:52:36] -rw-------. 1 boincer umatlas   1010885 Mar 23 20:01 agis_schedconf.cvmfs.json
[2026-03-23 20:52:36] -rw-------. 1 boincer umatlas   1511579 Mar 23 20:02 agis_ddmendpoints.agis.ALL.json
[2026-03-23 20:52:36] -rw-------. 1 boincer umatlas       432 Mar 23 20:02 workernode_map.json
[2026-03-23 20:52:36] drwx------. 5 boincer umatlas      4096 Mar 23 20:02 pilot3
[2026-03-23 20:52:36] -rw-r--r--. 1 boincer umatlas      7186 Mar 23 20:48 init_data.xml
[2026-03-23 20:52:36] -rw-------. 1 boincer umatlas 212577885 Mar 23 20:51 HITS.49273518._000071.pool.root.1
[2026-03-23 20:52:36] -rw-r--r--. 1 boincer umatlas       529 Mar 23 20:51 boinc_task_state.xml
[2026-03-23 20:52:36] -rw-------. 1 boincer umatlas      1028 Mar 23 20:51 memory_monitor_summary.json
[2026-03-23 20:52:36] -rw-------. 1 boincer umatlas        95 Mar 23 20:52 pilot_heartbeat.json
[2026-03-23 20:52:36] -rw-------. 1 boincer umatlas    368473 Mar 23 20:52 log.49273518._000071.job.log.tgz.1
[2026-03-23 20:52:36] -rw-------. 1 boincer umatlas      6319 Mar 23 20:52 heartbeat.json
[2026-03-23 20:52:36] -rw-r--r--. 1 boincer umatlas      8192 Mar 23 20:52 boinc_mmap_file
[2026-03-23 20:52:36] -rw-r--r--. 1 boincer umatlas        27 Mar 23 20:52 wrapper_checkpoint.txt
[2026-03-23 20:52:36] -rw-------. 1 boincer umatlas       823 Mar 23 20:52 pilotlog.txt
[2026-03-23 20:52:36] -rw-------. 1 boincer umatlas    462640 Mar 23 20:52 log.49273518._000071.job.log.1
[2026-03-23 20:52:36] -rw-------. 1 boincer umatlas       357 Mar 23 20:52 output.list
[2026-03-23 20:52:36] -rw-r--r--. 1 boincer umatlas       620 Mar 23 20:52 runtime_log
[2026-03-23 20:52:36] -rw-------. 1 boincer umatlas    849920 Mar 23 20:52 result.tar.gz
[2026-03-23 20:52:36] -rw-r--r--. 1 boincer umatlas      9343 Mar 23 20:52 runtime_log.err
[2026-03-23 20:52:36] -rw-------. 1 boincer umatlas       653 Mar 23 20:52 0oyLDmbvuO9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmfaAMDm3pjchm.diag
[2026-03-23 20:52:36] -rw-r--r--. 1 boincer umatlas     21418 Mar 23 20:52 stderr.txt
[2026-03-23 20:52:36] HITS file was successfully produced:
[2026-03-23 20:52:36] -rw-------. 1 boincer umatlas 212577885 Mar 23 20:51 shared/HITS.pool.root.1
[2026-03-23 20:52:36]  *** Contents of shared directory: ***
[2026-03-23 20:52:36] total 455592
[2026-03-23 20:52:36] -rw-r--r--. 2 boincer umatlas 252469627 Mar 23 20:01 ATLAS.root_0
[2026-03-23 20:52:36] -rw-r--r--. 2 boincer umatlas     15845 Mar 23 20:01 start_atlas.sh
[2026-03-23 20:52:36] -rw-r--r--. 2 boincer umatlas    597539 Mar 23 20:01 input.tar.gz
[2026-03-23 20:52:36] -rw-------. 1 boincer umatlas 212577885 Mar 23 20:51 HITS.pool.root.1
[2026-03-23 20:52:36] -rw-------. 1 boincer umatlas    849920 Mar 23 20:52 result.tar.gz
20:52:38 (3410832): run_atlas exited; CPU time 32647.234471
20:52:38 (3410832): called boinc_finish(0)

</stderr_txt>
]]>

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