Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:26:31 (3099006): wrapper (7.7.26015): starting
01:26:31 (3099006): wrapper: running run_atlas (--nthreads 2)
[2026-03-26 01:26:31] Arguments: --nthreads 2
[2026-03-26 01:26:31] Threads: 2
[2026-03-26 01:26:31] Checking for CVMFS
[2026-03-26 01:26:31] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-26 01:26:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-26 01:26:31] Running cvmfs_config stat atlas.cern.ch
[2026-03-26 01:26:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-26 01:26:31] 2.9.2.0 2720343 4733 59796 157702 3 50 27082901 36864000 0 130560 0 933147 99.968 159205 21278 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-26 01:26:31] CVMFS is ok
[2026-03-26 01:26:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-26 01:26:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-26 01:26:31] Further information can be found at the LHC@home message board.
[2026-03-26 01:26:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-26 01:26:31] Checking for apptainer binary...
[2026-03-26 01:26:31] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-26 01:26:31] Running /usr/bin/apptainer --version
[2026-03-26 01:26:31] apptainer version 1.4.1-1.1
[2026-03-26 01:26:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-26 01:26:31] atlasA219
[2026-03-26 01:26:31] apptainer works
[2026-03-26 01:26:31] Set ATHENA_PROC_NUMBER=2
[2026-03-26 01:26:31] Set ATHENA_CORE_NUMBER=2
[2026-03-26 01:26:31] Starting ATLAS job with PandaID=7058231691
[2026-03-26 01:26:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-26 05:02:06]  *** The last 200 lines of the pilot log: ***
[2026-03-26 05:02:06] 2026-03-26 04:01:09,049 | INFO     | will attempt to kill all subprocesses of pid=3107450
[2026-03-26 05:02:06] 2026-03-26 04:01:09,090 | INFO     | process IDs to be killed: [3107450] (in reverse order)
[2026-03-26 05:02:06] 2026-03-26 04:01:09,114 | WARNING  | found no corresponding commands to process id(s)
[2026-03-26 05:02:06] 2026-03-26 04:01:09,114 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-26 05:02:06] 2026-03-26 04:01:09,115 | INFO     | did not find any defunct processes belonging to 3107450
[2026-03-26 05:02:06] 2026-03-26 04:01:09,116 | INFO     | did not find any defunct processes belonging to 3107450
[2026-03-26 05:02:06] 2026-03-26 04:01:09,116 | INFO     | ready for new job
[2026-03-26 05:02:06] 2026-03-26 04:01:09,116 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-26 05:02:06] 2026-03-26 04:01:09,117 | INFO     | **************************************
[2026-03-26 05:02:06] 2026-03-26 04:01:09,117 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-26 05:02:06] 2026-03-26 04:01:09,117 | INFO     | **************************************
[2026-03-26 05:02:06] 2026-03-26 04:01:09,117 | INFO     | 
[2026-03-26 05:02:06] 2026-03-26 04:01:09,117 | INFO     | architecture information:
[2026-03-26 05:02:06] 2026-03-26 04:01:09,117 | INFO     | executing command: cat /etc/os-release
[2026-03-26 05:02:06] 2026-03-26 04:01:09,127 | INFO     | cat /etc/os-release:
[2026-03-26 05:02:06] NAME="CentOS Linux"
[2026-03-26 05:02:06] VERSION="7 (Core)"
[2026-03-26 05:02:06] ID="centos"
[2026-03-26 05:02:06] ID_LIKE="rhel fedora"
[2026-03-26 05:02:06] VERSION_ID="7"
[2026-03-26 05:02:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-26 05:02:06] ANSI_COLOR="0;31"
[2026-03-26 05:02:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-26 05:02:06] HOME_URL="https://www.centos.org/"
[2026-03-26 05:02:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-26 05:02:06] 
[2026-03-26 05:02:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-26 05:02:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-26 05:02:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-26 05:02:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-26 05:02:06] 
[2026-03-26 05:02:06] 2026-03-26 04:01:09,127 | INFO     | **************************************
[2026-03-26 05:02:06] 2026-03-26 04:01:09,630 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-26 05:02:06] 2026-03-26 04:01:09,640 | INFO     | sufficient remaining disk space (181178204160 B)
[2026-03-26 05:02:06] 2026-03-26 04:01:09,640 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-26 05:02:06] 2026-03-26 04:01:09,640 | INFO     | current server update state: UPDATING_FINAL
[2026-03-26 05:02:06] 2026-03-26 04:01:09,640 | INFO     | update_server=False
[2026-03-26 05:02:06] 2026-03-26 04:01:09,640 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-26 05:02:06] 2026-03-26 04:01:09,640 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-26 05:02:06] 2026-03-26 04:01:09,640 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-26 05:02:06] 2026-03-26 04:01:09,880 | WARNING  | process 3107450 can no longer be monitored (due to stat problems) - aborting
[2026-03-26 05:02:06] 2026-03-26 04:01:09,913 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-26 05:02:06] 2026-03-26 04:01:09,913 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-26 05:02:06] 2026-03-26 04:01:09,913 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-26 05:02:06] 2026-03-26 04:01:09,913 | WARNING  | maxPSS not found in memory monitor output
[2026-03-26 05:02:06] 2026-03-26 04:01:09,913 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-7058231691/payload.stdout) since it has not been created yet
[2026-03-26 05:02:06] 2026-03-26 04:01:09,913 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-26 05:02:06] 2026-03-26 04:01:09,923 | INFO     | sufficient remaining disk space (181178204160 B)
[2026-03-26 05:02:06] 2026-03-26 04:01:09,923 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-26 05:02:06] 2026-03-26 04:01:09,923 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-7058231691/HITS.49191308._000003.pool.root.1 since it does not exist
[2026-03-26 05:02:06] 2026-03-26 04:01:09,964 | INFO     | number of running child processes to parent process 3107450: 1
[2026-03-26 05:02:06] 2026-03-26 04:01:09,964 | INFO     | maximum number of monitored processes: 6
[2026-03-26 05:02:06] 2026-03-26 04:01:09,964 | INFO     | aborting job monitoring since job object (job id=7058231691) has expired
[2026-03-26 05:02:06] 2026-03-26 04:01:09,964 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-26 05:02:06] 2026-03-26 04:01:09,964 | INFO     | will abort loop
[2026-03-26 05:02:06] 2026-03-26 04:01:10,034 | INFO     | all payload control threads have been joined
[2026-03-26 05:02:06] 2026-03-26 04:01:10,229 | INFO     | all job control threads have been joined
[2026-03-26 05:02:06] 2026-03-26 04:01:10,645 | INFO     | [job] queue monitor thread has finished
[2026-03-26 05:02:06] 2026-03-26 04:01:10,645 | INFO     | [job] retrieve thread has finished
[2026-03-26 05:02:06] 2026-03-26 04:01:10,725 | INFO     | all data control threads have been joined
[2026-03-26 05:02:06] 2026-03-26 04:01:10,969 | INFO     | [job] job monitor thread has finished
[2026-03-26 05:02:06] 2026-03-26 04:01:10,973 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-26 05:02:06] 2026-03-26 04:01:11,039 | INFO     | [payload] control thread has finished
[2026-03-26 05:02:06] 2026-03-26 04:01:11,136 | INFO     | [payload] validate_post thread has finished
[2026-03-26 05:02:06] 2026-03-26 04:01:11,234 | INFO     | [job] control thread has finished
[2026-03-26 05:02:06] 2026-03-26 04:01:11,704 | INFO     | [job] validate thread has finished
[2026-03-26 05:02:06] 2026-03-26 04:01:11,730 | INFO     | [data] control thread has finished
[2026-03-26 05:02:06] 2026-03-26 04:01:11,750 | INFO     | [payload] validate_pre thread has finished
[2026-03-26 05:02:06] 2026-03-26 04:01:11,755 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-26 05:02:06] 2026-03-26 04:01:11,903 | INFO     | [job] create_data_payload thread has finished
[2026-03-26 05:02:06] 2026-03-26 04:01:11,920 | INFO     | [payload] execute_payloads thread has finished
[2026-03-26 05:02:06] 2026-03-26 04:01:11,922 | INFO     | [data] copytool_in thread has finished
[2026-03-26 05:02:06] 2026-03-26 04:01:12,115 | INFO     | [payload] failed_post thread has finished
[2026-03-26 05:02:06] 2026-03-26 04:01:12,978 | INFO     | [data] copytool_out thread has finished
[2026-03-26 05:02:06] 2026-03-26 04:01:13,645 | INFO     | [data] queue_monitor thread has finished
[2026-03-26 05:02:06] 2026-03-26 04:01:39,172 | INFO     | PID=3103034 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-26 05:02:06] 2026-03-26 04:01:39,172 | INFO     | found 0 job(s) in 20 queues
[2026-03-26 05:02:06] 2026-03-26 04:01:39,172 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-26 05:02:06] 2026-03-26 04:01:39,172 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-26 05:02:06] 2026-03-26 04:02:00,130 | INFO     | [monitor] cgroup control has ended
[2026-03-26 05:02:06] 2026-03-26 04:02:01,452 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139967548045120)>', '<ExcThread(monitor, started 139967045023488)>']
[2026-03-26 05:02:06] 2026-03-26 04:02:02,287 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-26 05:02:06] 2026-03-26 04:02:02,287 | INFO     | [monitor] control thread has ended
[2026-03-26 05:02:06] 2026-03-26 04:02:06,477 | INFO     | all workflow threads have been joined
[2026-03-26 05:02:06] 2026-03-26 04:02:06,478 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-26 05:02:06] 2026-03-26 04:02:06,478 | INFO     | traces error code: 0
[2026-03-26 05:02:06] 2026-03-26 04:02:06,478 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-26 05:02:06] 2026-03-26 04:02:06,520 [wrapper] ==== pilot stdout END ====
[2026-03-26 05:02:06] 2026-03-26 04:02:06,523 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-26 05:02:06] 2026-03-26 04:02:06,526 [wrapper] pilotpid: 3103034
[2026-03-26 05:02:06] 2026-03-26 04:02:06,529 [wrapper] Pilot exit status: 0
[2026-03-26 05:02:06] 2026-03-26 04:02:06,535 [wrapper] pandaids: 7058231691
[2026-03-26 05:02:06] 2026-03-26 04:02:06,552 [wrapper] cleanup supervisor_pilot 3119356 3103035
[2026-03-26 05:02:06] 2026-03-26 04:02:06,555 [wrapper] Test setup, not cleaning
[2026-03-26 05:02:06] 2026-03-26 04:02:06,557 [wrapper] apfmon messages muted
[2026-03-26 05:02:06] 2026-03-26 04:02:06,560 [wrapper] ==== wrapper stdout END ====
[2026-03-26 05:02:06] 2026-03-26 04:02:06,562 [wrapper] ==== wrapper stderr END ====
[2026-03-26 05:02:06]  *** Error codes and diagnostics ***
[2026-03-26 05:02:06]     "exeErrorCode": 0,
[2026-03-26 05:02:06]     "exeErrorDiag": "",
[2026-03-26 05:02:06]     "pilotErrorCode": 0,
[2026-03-26 05:02:06]     "pilotErrorDiag": "",
[2026-03-26 05:02:06]  *** Listing of results directory ***
[2026-03-26 05:02:06] total 465008
[2026-03-26 05:02:06] -rwx------ 1 boinc boinc     36322 Mar 22 05:27 runpilot2-wrapper.sh
[2026-03-26 05:02:06] -rw-r--r-- 1 boinc boinc      5111 Mar 23 23:52 queuedata.json
[2026-03-26 05:02:06] -rw-r--r-- 1 boinc boinc    585013 Mar 23 23:53 pilot3.tar.gz
[2026-03-26 05:02:06] -rw-r--r-- 1 boinc boinc       100 Mar 26 01:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-26 05:02:06] -rwxr-xr-x 1 boinc boinc      7986 Mar 26 01:26 run_atlas
[2026-03-26 05:02:06] -rw-r--r-- 1 boinc boinc       105 Mar 26 01:26 job.xml
[2026-03-26 05:02:06] -rw-r--r-- 2 boinc boinc 250594447 Mar 26 01:26 EVNT.49126526._000001.pool.root.1
[2026-03-26 05:02:06] drwxrwx--x 2 boinc boinc      4096 Mar 26 01:26 shared
[2026-03-26 05:02:06] -rw-r--r-- 2 boinc boinc    597544 Mar 26 01:26 input.tar.gz
[2026-03-26 05:02:06] -rw-r--r-- 2 boinc boinc     15845 Mar 26 01:26 start_atlas.sh
[2026-03-26 05:02:06] -rw-r--r-- 1 boinc boinc         0 Mar 26 01:26 boinc_setup_complete
[2026-03-26 05:02:06] -rw-r--r-- 1 boinc boinc      6207 Mar 26 01:26 init_data.xml
[2026-03-26 05:02:06] -rw-r--r-- 1 boinc boinc         0 Mar 26 01:26 boinc_lockfile
[2026-03-26 05:02:06] -rw-r--r-- 1 boinc boinc      2601 Mar 26 01:26 pandaJob.out
[2026-03-26 05:02:06] -rw------- 1 boinc boinc   1012171 Mar 26 01:26 agis_schedconf.cvmfs.json
[2026-03-26 05:02:06] -rw------- 1 boinc boinc       421 Mar 26 01:26 workernode_map.json
[2026-03-26 05:02:06] drwx------ 5 boinc boinc      4096 Mar 26 01:26 pilot3
[2026-03-26 05:02:06] -rw------- 1 boinc boinc        95 Mar 26 05:00 pilot_heartbeat.json
[2026-03-26 05:02:06] -rw------- 1 boinc boinc 217352122 Mar 26 05:00 HITS.49191308._000003.pool.root.1
[2026-03-26 05:02:06] -rw-r--r-- 1 boinc boinc       530 Mar 26 05:00 boinc_task_state.xml
[2026-03-26 05:02:06] -rw------- 1 boinc boinc      1016 Mar 26 05:01 memory_monitor_summary.json
[2026-03-26 05:02:06] -rw------- 1 boinc boinc   1511579 Mar 26 05:01 agis_ddmendpoints.agis.ALL.json
[2026-03-26 05:02:06] -rw------- 1 boinc boinc    335503 Mar 26 05:01 log.49191308._000003.job.log.tgz.1
[2026-03-26 05:02:06] -rw------- 1 boinc boinc      6294 Mar 26 05:01 heartbeat.json
[2026-03-26 05:02:06] -rw-r--r-- 1 boinc boinc      8192 Mar 26 05:02 boinc_mmap_file
[2026-03-26 05:02:06] -rw-r--r-- 1 boinc boinc        28 Mar 26 05:02 wrapper_checkpoint.txt
[2026-03-26 05:02:06] -rw------- 1 boinc boinc      6249 Mar 26 05:02 pilotlog.txt
[2026-03-26 05:02:06] -rw------- 1 boinc boinc   1810194 Mar 26 05:02 log.49191308._000003.job.log.1
[2026-03-26 05:02:06] -rw------- 1 boinc boinc       357 Mar 26 05:02 output.list
[2026-03-26 05:02:06] -rw-r--r-- 1 boinc boinc       620 Mar 26 05:02 runtime_log
[2026-03-26 05:02:06] -rw------- 1 boinc boinc   2160640 Mar 26 05:02 result.tar.gz
[2026-03-26 05:02:06] -rw-r--r-- 1 boinc boinc      8912 Mar 26 05:02 runtime_log.err
[2026-03-26 05:02:06] -rw------- 1 boinc boinc       664 Mar 26 05:02 JzrKDmraPO9n9Rq4apOajLDm4fhM0noT9bVooX4SDm0J0LDmcZ5Gam.diag
[2026-03-26 05:02:06] -rw-r--r-- 1 boinc boinc     11982 Mar 26 05:02 stderr.txt
[2026-03-26 05:02:06] HITS file was successfully produced:
[2026-03-26 05:02:06] -rw------- 1 boinc boinc 217352122 Mar 26 05:00 shared/HITS.pool.root.1
[2026-03-26 05:02:06]  *** Contents of shared directory: ***
[2026-03-26 05:02:06] total 459704
[2026-03-26 05:02:06] -rw-r--r-- 2 boinc boinc 250594447 Mar 26 01:26 ATLAS.root_0
[2026-03-26 05:02:06] -rw-r--r-- 2 boinc boinc    597544 Mar 26 01:26 input.tar.gz
[2026-03-26 05:02:06] -rw-r--r-- 2 boinc boinc     15845 Mar 26 01:26 start_atlas.sh
[2026-03-26 05:02:06] -rw------- 1 boinc boinc 217352122 Mar 26 05:00 HITS.pool.root.1
[2026-03-26 05:02:06] -rw------- 1 boinc boinc   2160640 Mar 26 05:02 result.tar.gz
05:02:07 (3099006): run_atlas exited; CPU time 25188.705599
05:02:07 (3099006): called boinc_finish(0)

</stderr_txt>
]]>

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