Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:35:25 (28018): wrapper (7.7.26015): starting
01:35:25 (28018): wrapper: running run_atlas (--nthreads 8)
[2026-03-24 01:35:25] Arguments: --nthreads 8
[2026-03-24 01:35:25] Threads: 8
[2026-03-24 01:35:25] Checking for CVMFS
[2026-03-24 01:35:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-24 01:35:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-24 01:35:25] Running cvmfs_config stat atlas.cern.ch
[2026-03-24 01:35:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-24 01:35:28] 2.11.0.0 5693 28250 71872 157625 3 188 3652266 4096000 1790 130560 1 6058121 99.876 1559037 261 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-24 01:35:28] CVMFS is ok
[2026-03-24 01:35:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-24 01:35:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-24 01:35:28] Further information can be found at the LHC@home message board.
[2026-03-24 01:35:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-24 01:35:28] Checking for apptainer binary...
[2026-03-24 01:35:28] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-24 01:35:28] apptainer is not installed, using version from CVMFS
[2026-03-24 01:35:28] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-24 01:35:28] WARNING: Environment variable TMPDIR already has value [/tmp/job_11380027/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node016
[2026-03-24 01:35:28] apptainer works
[2026-03-24 01:35:28] Set ATHENA_PROC_NUMBER=8
[2026-03-24 01:35:28] Set ATHENA_CORE_NUMBER=8
[2026-03-24 01:35:28] Starting ATLAS job with PandaID=7063269046
[2026-03-24 01:35:28] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11380027/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-24 03:37:53]  *** The last 200 lines of the pilot log: ***
[2026-03-24 03:37:53] 2026-03-24 02:37:10,491 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-24 03:37:53] 2026-03-24 02:37:10,491 | INFO     | log transfer has been attempted: DONE
[2026-03-24 03:37:53] 2026-03-24 02:37:10,491 | INFO     | job 7063269046 has finished - writing final server update
[2026-03-24 03:37:53] 2026-03-24 02:37:10,491 | INFO     | total number of processed events: 400 (read)
[2026-03-24 03:37:53] 2026-03-24 02:37:10,508 | INFO     | using path: /tmp/job_11380027/atlas/pilot/slots/0/PanDA_Pilot-7063269046/memory_monitor_summary.json (trf name=prmon)
[2026-03-24 03:37:53] 2026-03-24 02:37:10,509 | INFO     | extracted standard info from prmon json
[2026-03-24 03:37:53] 2026-03-24 02:37:10,509 | INFO     | extracted standard memory fields from prmon json
[2026-03-24 03:37:53] 2026-03-24 02:37:10,509 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-24 03:37:53] 2026-03-24 02:37:10,509 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-24 03:37:53] 2026-03-24 02:37:10,509 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-24 03:37:53] 2026-03-24 02:37:10,510 | INFO     | fitting pss+swap vs Time
[2026-03-24 03:37:53] 2026-03-24 02:37:10,510 | INFO     | sum of square deviations: 535786790.0
[2026-03-24 03:37:53] 2026-03-24 02:37:10,510 | INFO     | sum of deviations: 8318643809.999997
[2026-03-24 03:37:53] 2026-03-24 02:37:10,510 | INFO     | mean x: 1774316182.5
[2026-03-24 03:37:53] 2026-03-24 02:37:10,511 | INFO     | mean y: 2500524.95
[2026-03-24 03:37:53] 2026-03-24 02:37:10,511 | INFO     | intersect: -27545592492.678246
[2026-03-24 03:37:53] 2026-03-24 02:37:10,511 | INFO     | chi2: 1.8591706174855083
[2026-03-24 03:37:53] 2026-03-24 02:37:10,511 | INFO     | sum of square deviations: 471562330.0
[2026-03-24 03:37:53] 2026-03-24 02:37:10,511 | INFO     | sum of deviations: 15293062767.0
[2026-03-24 03:37:53] 2026-03-24 02:37:10,511 | INFO     | mean x: 1774316030.0
[2026-03-24 03:37:53] 2026-03-24 02:37:10,511 | INFO     | mean y: 2516479.808695652
[2026-03-24 03:37:53] 2026-03-24 02:37:10,511 | INFO     | intersect: -57539667636.73058
[2026-03-24 03:37:53] 2026-03-24 02:37:10,511 | INFO     | chi2: 1.1767723654352236
[2026-03-24 03:37:53] 2026-03-24 02:37:10,511 | INFO     | current chi2=1.1767723654352236 (change=36.7044447471537 %)
[2026-03-24 03:37:53] 2026-03-24 02:37:10,511 | INFO     | sum of square deviations: 412686807.5
[2026-03-24 03:37:53] 2026-03-24 02:37:10,512 | INFO     | sum of deviations: 14563061005.0
[2026-03-24 03:37:53] 2026-03-24 02:37:10,512 | INFO     | mean x: 1774315877.5
[2026-03-24 03:37:53] 2026-03-24 02:37:10,512 | INFO     | mean y: 2514587.7636363637
[2026-03-24 03:37:53] 2026-03-24 02:37:10,512 | INFO     | intersect: -62610270450.61588
[2026-03-24 03:37:53] 2026-03-24 02:37:10,512 | INFO     | chi2: 1.1779042944040135
[2026-03-24 03:37:53] 2026-03-24 02:37:10,512 | INFO     | current chi2=1.1779042944040135 (change=-0.09618928877304553 %)
[2026-03-24 03:37:53] 2026-03-24 02:37:10,512 | INFO     | right removable region: 109
[2026-03-24 03:37:53] 2026-03-24 02:37:10,512 | INFO     | sum of square deviations: 471562330.0
[2026-03-24 03:37:53] 2026-03-24 02:37:10,512 | INFO     | sum of deviations: -6428983492.0
[2026-03-24 03:37:53] 2026-03-24 02:37:10,512 | INFO     | mean x: 1774316335.0
[2026-03-24 03:37:53] 2026-03-24 02:37:10,512 | INFO     | mean y: 2534861.0782608697
[2026-03-24 03:37:53] 2026-03-24 02:37:10,513 | INFO     | intersect: 24192445084.18905
[2026-03-24 03:37:53] 2026-03-24 02:37:10,513 | INFO     | chi2: 0.7285622461612004
[2026-03-24 03:37:53] 2026-03-24 02:37:10,513 | INFO     | current chi2=0.7285622461612004 (change=60.81251288563464 %)
[2026-03-24 03:37:53] 2026-03-24 02:37:10,513 | INFO     | sum of square deviations: 412686807.5
[2026-03-24 03:37:53] 2026-03-24 02:37:10,513 | INFO     | sum of deviations: -7985672717.499999
[2026-03-24 03:37:53] 2026-03-24 02:37:10,513 | INFO     | mean x: 1774316487.5
[2026-03-24 03:37:53] 2026-03-24 02:37:10,513 | INFO     | mean y: 2538782.4272727272
[2026-03-24 03:37:53] 2026-03-24 02:37:10,513 | INFO     | intersect: 34336349577.77037
[2026-03-24 03:37:53] 2026-03-24 02:37:10,513 | INFO     | chi2: 0.7089687500398121
[2026-03-24 03:37:53] 2026-03-24 02:37:10,513 | INFO     | current chi2=0.7089687500398121 (change=2.689337283756679 %)
[2026-03-24 03:37:53] 2026-03-24 02:37:10,513 | INFO     | left removable region: 20
[2026-03-24 03:37:53] 2026-03-24 02:37:10,513 | INFO     | sum of square deviations: 218571540.0
[2026-03-24 03:37:53] 2026-03-24 02:37:10,514 | INFO     | sum of deviations: -862609539.9999998
[2026-03-24 03:37:53] 2026-03-24 02:37:10,514 | INFO     | mean x: 1774316457.0
[2026-03-24 03:37:53] 2026-03-24 02:37:10,514 | INFO     | mean y: 2557746.820224719
[2026-03-24 03:37:53] 2026-03-24 02:37:10,514 | INFO     | intersect: 7005035300.79271
[2026-03-24 03:37:53] 2026-03-24 02:37:10,514 | INFO     | chi2: 0.004368390921018237
[2026-03-24 03:37:53] 2026-03-24 02:37:10,514 | INFO     | current memory leak: -3.95 B/s (using 89 data points, chi2=0.00)
[2026-03-24 03:37:53] 2026-03-24 02:37:10,514 | INFO     | could have reported an average CPU frequency of 2506 MHz (8 samples)
[2026-03-24 03:37:53] 2026-03-24 02:37:10,514 | INFO     | ..............................
[2026-03-24 03:37:53] 2026-03-24 02:37:10,514 | INFO     | . Timing measurements:
[2026-03-24 03:37:53] 2026-03-24 02:37:10,514 | INFO     | . get job = 0 s
[2026-03-24 03:37:53] 2026-03-24 02:37:10,514 | INFO     | . initial setup = 2 s
[2026-03-24 03:37:53] 2026-03-24 02:37:10,514 | INFO     | . payload setup = 4 s
[2026-03-24 03:37:53] 2026-03-24 02:37:10,514 | INFO     | . stage-in = 0 s
[2026-03-24 03:37:53] 2026-03-24 02:37:10,514 | INFO     | . payload execution = 7272 s
[2026-03-24 03:37:53] 2026-03-24 02:37:10,514 | INFO     | . stage-out = 0 s
[2026-03-24 03:37:53] 2026-03-24 02:37:10,514 | INFO     | . log creation = 0 s
[2026-03-24 03:37:53] 2026-03-24 02:37:10,514 | INFO     | ..............................
[2026-03-24 03:37:53] 2026-03-24 02:37:10,814 | INFO     | 
[2026-03-24 03:37:53] 2026-03-24 02:37:10,814 | INFO     | job summary report
[2026-03-24 03:37:53] 2026-03-24 02:37:10,814 | INFO     | --------------------------------------------------
[2026-03-24 03:37:53] 2026-03-24 02:37:10,814 | INFO     | PanDA job id: 7063269046
[2026-03-24 03:37:53] 2026-03-24 02:37:10,814 | INFO     | task id: 49178731
[2026-03-24 03:37:53] 2026-03-24 02:37:10,814 | INFO     | errors: (none)
[2026-03-24 03:37:53] 2026-03-24 02:37:10,814 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-24 03:37:53] 2026-03-24 02:37:10,814 | INFO     | pilot state: finished 
[2026-03-24 03:37:53] 2026-03-24 02:37:10,814 | INFO     | transexitcode: 0
[2026-03-24 03:37:53] 2026-03-24 02:37:10,814 | INFO     | exeerrorcode: 0
[2026-03-24 03:37:53] 2026-03-24 02:37:10,814 | INFO     | exeerrordiag: 
[2026-03-24 03:37:53] 2026-03-24 02:37:10,815 | INFO     | exitcode: 0
[2026-03-24 03:37:53] 2026-03-24 02:37:10,815 | INFO     | exitmsg: OK
[2026-03-24 03:37:53] 2026-03-24 02:37:10,815 | INFO     | cpuconsumptiontime: 53061 s
[2026-03-24 03:37:53] 2026-03-24 02:37:10,815 | INFO     | nevents: 400
[2026-03-24 03:37:53] 2026-03-24 02:37:10,815 | INFO     | neventsw: 0
[2026-03-24 03:37:53] 2026-03-24 02:37:10,815 | INFO     | pid: 6646
[2026-03-24 03:37:53] 2026-03-24 02:37:10,815 | INFO     | pgrp: 6646
[2026-03-24 03:37:53] 2026-03-24 02:37:10,815 | INFO     | corecount: 8
[2026-03-24 03:37:53] 2026-03-24 02:37:10,815 | INFO     | event service: False
[2026-03-24 03:37:53] 2026-03-24 02:37:10,815 | INFO     | sizes: {0: 2280047, 1: 2280309, 11: 2280337, 7280: 2307870, 7281: 2316898, 7284: 2317276}
[2026-03-24 03:37:53] 2026-03-24 02:37:10,815 | INFO     | --------------------------------------------------
[2026-03-24 03:37:53] 2026-03-24 02:37:10,815 | INFO     | 
[2026-03-24 03:37:53] 2026-03-24 02:37:10,815 | INFO     | executing command: ls -lF /tmp/job_11380027/atlas/pilot/slots/0
[2026-03-24 03:37:53] 2026-03-24 02:37:10,824 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-24 03:37:53] 2026-03-24 02:37:10,824 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-24 03:37:53] 2026-03-24 02:37:10,824 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-24 03:37:53] 2026-03-24 02:37:10,824 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-24 03:37:53] 2026-03-24 02:37:10,824 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-24 03:37:53] 2026-03-24 02:37:10,824 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-24 03:37:53] 2026-03-24 02:37:10,824 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-24 03:37:53] 2026-03-24 02:37:10,825 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-24 03:37:53] 2026-03-24 02:37:10,825 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-24 03:37:53] 2026-03-24 02:37:10,825 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-24 03:37:53] 2026-03-24 02:37:10,825 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-24 03:37:53] 2026-03-24 02:37:10,825 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-24 03:37:53] 2026-03-24 02:37:10,825 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-24 03:37:53] 2026-03-24 02:37:10,825 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-24 03:37:53] 2026-03-24 02:37:10,825 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-24 03:37:53] 2026-03-24 02:37:10,825 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-24 03:37:53] 2026-03-24 02:37:10,825 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-24 03:37:53] 2026-03-24 02:37:10,825 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-24 03:37:53] 2026-03-24 02:37:10,825 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-24 03:37:53] 2026-03-24 02:37:10,825 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-24 03:37:53] 2026-03-24 02:37:10,825 | INFO     | job 7063269046 has completed (purged errors)
[2026-03-24 03:37:53] 2026-03-24 02:37:10,825 | INFO     | overall cleanup function is called
[2026-03-24 03:37:53] 2026-03-24 02:37:11,831 | INFO     | --- collectZombieJob: --- 10, [6646]
[2026-03-24 03:37:53] 2026-03-24 02:37:11,831 | INFO     | zombie collector waiting for pid 6646
[2026-03-24 03:37:53] 2026-03-24 02:37:11,831 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-24 03:37:53] 2026-03-24 02:37:11,831 | INFO     | collected zombie processes
[2026-03-24 03:37:53] 2026-03-24 02:37:11,831 | INFO     | will attempt to kill all subprocesses of pid=6646
[2026-03-24 03:37:53] 2026-03-24 02:37:11,930 | INFO     | process IDs to be killed: [6646] (in reverse order)
[2026-03-24 03:37:53] 2026-03-24 02:37:11,965 | WARNING  | found no corresponding commands to process id(s)
[2026-03-24 03:37:53] 2026-03-24 02:37:11,965 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-24 03:37:53] 2026-03-24 02:37:11,969 | INFO     | did not find any defunct processes belonging to 6646
[2026-03-24 03:37:53] 2026-03-24 02:37:11,972 | INFO     | did not find any defunct processes belonging to 6646
[2026-03-24 03:37:53] 2026-03-24 02:37:11,972 | INFO     | ready for new job
[2026-03-24 03:37:53] 2026-03-24 02:37:11,972 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-24 03:37:53] 2026-03-24 02:37:11,973 | INFO     | **************************************
[2026-03-24 03:37:53] 2026-03-24 02:37:11,973 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-24 03:37:53] 2026-03-24 02:37:11,973 | INFO     | **************************************
[2026-03-24 03:37:53] 2026-03-24 02:37:11,973 | INFO     | 
[2026-03-24 03:37:53] 2026-03-24 02:37:11,987 | INFO     | architecture information:
[2026-03-24 03:37:53] 2026-03-24 02:37:11,987 | INFO     | executing command: cat /etc/os-release
[2026-03-24 03:37:53] 2026-03-24 02:37:11,994 | INFO     | cat /etc/os-release:
[2026-03-24 03:37:53] NAME="CentOS Linux"
[2026-03-24 03:37:53] VERSION="7 (Core)"
[2026-03-24 03:37:53] ID="centos"
[2026-03-24 03:37:53] ID_LIKE="rhel fedora"
[2026-03-24 03:37:53] VERSION_ID="7"
[2026-03-24 03:37:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-24 03:37:53] ANSI_COLOR="0;31"
[2026-03-24 03:37:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-24 03:37:53] HOME_URL="https://www.centos.org/"
[2026-03-24 03:37:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-24 03:37:53] 
[2026-03-24 03:37:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-24 03:37:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-24 03:37:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-24 03:37:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-24 03:37:53] 
[2026-03-24 03:37:53] 2026-03-24 02:37:11,994 | INFO     | **************************************
[2026-03-24 03:37:53] 2026-03-24 02:37:12,496 | INFO     | executing command: df -mP /tmp/job_11380027/atlas/pilot/slots/0
[2026-03-24 03:37:53] 2026-03-24 02:37:12,503 | INFO     | sufficient remaining disk space (224382681088 B)
[2026-03-24 03:37:53] 2026-03-24 02:37:12,503 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-24 03:37:53] 2026-03-24 02:37:12,503 | INFO     | current server update state: UPDATING_FINAL
[2026-03-24 03:37:53] 2026-03-24 02:37:12,503 | INFO     | update_server=False
[2026-03-24 03:37:53] 2026-03-24 02:37:12,503 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-24 03:37:53] 2026-03-24 02:37:12,503 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-24 03:37:53] 2026-03-24 02:37:12,503 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-24 03:37:53] 2026-03-24 02:37:12,708 | INFO     | all data control threads have been joined
[2026-03-24 03:37:53] 2026-03-24 02:37:12,762 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-24 03:37:53] 2026-03-24 02:37:12,894 | INFO     | all job control threads have been joined
[2026-03-24 03:37:53] 2026-03-24 02:37:13,011 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-24 03:37:53] 2026-03-24 02:37:13,011 | INFO     | aborting loop
[2026-03-24 03:37:53] 2026-03-24 02:37:13,249 | INFO     | all payload control threads have been joined
[2026-03-24 03:37:53] 2026-03-24 02:37:13,508 | INFO     | [job] retrieve thread has finished
[2026-03-24 03:37:53] 2026-03-24 02:37:13,508 | INFO     | [job] queue monitor thread has finished
[2026-03-24 03:37:53] 2026-03-24 02:37:13,532 | INFO     | [payload] execute_payloads thread has finished
[2026-03-24 03:37:53] 2026-03-24 02:37:13,591 | INFO     | [payload] validate_pre thread has finished
[2026-03-24 03:37:53] 2026-03-24 02:37:13,661 | INFO     | [job] create_data_payload thread has finished
[2026-03-24 03:37:53] 2026-03-24 02:37:13,700 | INFO     | [data] copytool_in thread has finished
[2026-03-24 03:37:53] 2026-03-24 02:37:13,713 | INFO     | [data] control thread has finished
[2026-03-24 03:37:53] 2026-03-24 02:37:13,899 | INFO     | [job] control thread has finished
[2026-03-24 03:37:53] 2026-03-24 02:37:13,925 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-24 03:37:53] 2026-03-24 02:37:14,016 | INFO     | [job] job monitor thread has finished
[2026-03-24 03:37:53] 2026-03-24 02:37:14,212 | INFO     | [payload] validate_post thread has finished
[2026-03-24 03:37:53] 2026-03-24 02:37:14,254 | INFO     | [payload] control thread has finished
[2026-03-24 03:37:53] 2026-03-24 02:37:14,659 | INFO     | [job] validate thread has finished
[2026-03-24 03:37:53] 2026-03-24 02:37:14,767 | INFO     | [data] copytool_out thread has finished
[2026-03-24 03:37:53] 2026-03-24 02:37:14,947 | INFO     | [payload] failed_post thread has finished
[2026-03-24 03:37:53] 2026-03-24 02:37:16,508 | INFO     | [data] queue_monitor thread has finished
[2026-03-24 03:37:53] 2026-03-24 02:37:42,763 | INFO     | PID=453 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2026-03-24 03:37:53] 2026-03-24 02:37:42,763 | INFO     | .. there are 3 such processes running
[2026-03-24 03:37:53] 2026-03-24 02:37:42,763 | INFO     | found 0 job(s) in 20 queues
[2026-03-24 03:37:53] 2026-03-24 02:37:42,763 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-24 03:37:53] 2026-03-24 02:37:42,763 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-24 03:37:53] 2026-03-24 02:37:47,131 | INFO     | [monitor] cgroup control has ended
[2026-03-24 03:37:53] 2026-03-24 02:37:48,099 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456061089536)>']
[2026-03-24 03:37:53] 2026-03-24 02:37:48,793 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-24 03:37:53] 2026-03-24 02:37:48,793 | INFO     | [monitor] control thread has ended
[2026-03-24 03:37:53] 2026-03-24 02:37:53,125 | INFO     | all workflow threads have been joined
[2026-03-24 03:37:53] 2026-03-24 02:37:53,125 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-24 03:37:53] 2026-03-24 02:37:53,125 | INFO     | traces error code: 0
[2026-03-24 03:37:53] 2026-03-24 02:37:53,125 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-24 03:37:53] 2026-03-24 02:37:53,179 [wrapper] ==== pilot stdout END ====
[2026-03-24 03:37:53] 2026-03-24 02:37:53,180 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-24 03:37:53] 2026-03-24 02:37:53,181 [wrapper] pilotpid: 453
[2026-03-24 03:37:53] 2026-03-24 02:37:53,182 [wrapper] Pilot exit status: 0
[2026-03-24 03:37:53] 2026-03-24 02:37:53,187 [wrapper] pandaids: 7063269046
[2026-03-24 03:37:53] 2026-03-24 02:37:53,209 [wrapper] cleanup supervisor_pilot  8685 454
[2026-03-24 03:37:53] 2026-03-24 02:37:53,210 [wrapper] Test setup, not cleaning
[2026-03-24 03:37:53] 2026-03-24 02:37:53,211 [wrapper] apfmon messages muted
[2026-03-24 03:37:53] 2026-03-24 02:37:53,212 [wrapper] ==== wrapper stdout END ====
[2026-03-24 03:37:53] 2026-03-24 02:37:53,213 [wrapper] ==== wrapper stderr END ====
[2026-03-24 03:37:53]  *** Error codes and diagnostics ***
[2026-03-24 03:37:53]     "exeErrorCode": 0,
[2026-03-24 03:37:53]     "exeErrorDiag": "",
[2026-03-24 03:37:53]     "pilotErrorCode": 0,
[2026-03-24 03:37:53]     "pilotErrorDiag": "",
[2026-03-24 03:37:53]  *** Listing of results directory ***
[2026-03-24 03:37:53] total 476416
[2026-03-24 03:37:53] -rw------- 1 mf493845 unix-user    585013 Mar 23 14:53 pilot3.tar.gz
[2026-03-24 03:37:53] -rwx------ 1 mf493845 unix-user     36322 Mar 23 14:54 runpilot2-wrapper.sh
[2026-03-24 03:37:53] -rw------- 1 mf493845 unix-user      5111 Mar 23 14:57 queuedata.json
[2026-03-24 03:37:53] -rw------- 1 mf493845 unix-user       100 Mar 24 00:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-24 03:37:53] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 24 00:34 run_atlas
[2026-03-24 03:37:53] -rw------- 1 mf493845 unix-user       105 Mar 24 00:34 job.xml
[2026-03-24 03:37:53] -rw-r--r-- 2 mf493845 unix-user 239596236 Mar 24 01:35 EVNT.49129589._000003.pool.root.1
[2026-03-24 03:37:53] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 24 01:35 start_atlas.sh
[2026-03-24 03:37:53] drwxrwx--x 2 mf493845 unix-user       100 Mar 24 01:35 shared
[2026-03-24 03:37:53] -rw-r--r-- 2 mf493845 unix-user    597532 Mar 24 01:35 input.tar.gz
[2026-03-24 03:37:53] -rw------- 1 mf493845 unix-user      6389 Mar 24 01:35 init_data.xml
[2026-03-24 03:37:53] -rw------- 1 mf493845 unix-user         0 Mar 24 01:35 boinc_setup_complete
[2026-03-24 03:37:53] -rw------- 1 mf493845 unix-user      8192 Mar 24 01:35 boinc_mmap_file
[2026-03-24 03:37:53] -rw------- 1 mf493845 unix-user         0 Mar 24 01:35 boinc_lockfile
[2026-03-24 03:37:53] -rw------- 1 mf493845 unix-user      2601 Mar 24 01:35 pandaJob.out
[2026-03-24 03:37:53] -rw------- 1 mf493845 unix-user   1010909 Mar 24 01:35 agis_schedconf.cvmfs.json
[2026-03-24 03:37:53] -rw------- 1 mf493845 unix-user   1511579 Mar 24 01:35 agis_ddmendpoints.agis.ALL.json
[2026-03-24 03:37:53] -rw------- 1 mf493845 unix-user       416 Mar 24 01:35 workernode_map.json
[2026-03-24 03:37:53] drwx------ 5 mf493845 unix-user       440 Mar 24 01:35 pilot3
[2026-03-24 03:37:53] -rw------- 1 mf493845 unix-user 241484572 Mar 24 03:36 HITS.49178731._000326.pool.root.1
[2026-03-24 03:37:53] -rw------- 1 mf493845 unix-user      1021 Mar 24 03:37 memory_monitor_summary.json
[2026-03-24 03:37:53] -rw------- 1 mf493845 unix-user    348193 Mar 24 03:37 log.49178731._000326.job.log.tgz.1
[2026-03-24 03:37:53] -rw------- 1 mf493845 unix-user      6295 Mar 24 03:37 heartbeat.json
[2026-03-24 03:37:53] -rw------- 1 mf493845 unix-user        95 Mar 24 03:37 pilot_heartbeat.json
[2026-03-24 03:37:53] -rw------- 1 mf493845 unix-user      4829 Mar 24 03:37 pilotlog.txt
[2026-03-24 03:37:53] -rw------- 1 mf493845 unix-user   1074107 Mar 24 03:37 log.49178731._000326.job.log.1
[2026-03-24 03:37:53] -rw------- 1 mf493845 unix-user       357 Mar 24 03:37 output.list
[2026-03-24 03:37:53] -rw------- 1 mf493845 unix-user       620 Mar 24 03:37 runtime_log
[2026-03-24 03:37:53] -rw------- 1 mf493845 unix-user   1443840 Mar 24 03:37 result.tar.gz
[2026-03-24 03:37:53] -rw------- 1 mf493845 unix-user       644 Mar 24 03:37 ZtTMDmxuuO9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmUWAMDmuiCPvn.diag
[2026-03-24 03:37:53] -rw------- 1 mf493845 unix-user      9219 Mar 24 03:37 runtime_log.err
[2026-03-24 03:37:53] -rw------- 1 mf493845 unix-user     21476 Mar 24 03:37 stderr.txt
[2026-03-24 03:37:53] HITS file was successfully produced:
[2026-03-24 03:37:53] -rw------- 1 mf493845 unix-user 241484572 Mar 24 03:36 shared/HITS.pool.root.1
[2026-03-24 03:37:53]  *** Contents of shared directory: ***
[2026-03-24 03:37:53] total 471824
[2026-03-24 03:37:53] -rw-r--r-- 2 mf493845 unix-user 239596236 Mar 24 01:35 ATLAS.root_0
[2026-03-24 03:37:53] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 24 01:35 start_atlas.sh
[2026-03-24 03:37:53] -rw-r--r-- 2 mf493845 unix-user    597532 Mar 24 01:35 input.tar.gz
[2026-03-24 03:37:53] -rw------- 1 mf493845 unix-user 241484572 Mar 24 03:36 HITS.pool.root.1
[2026-03-24 03:37:53] -rw------- 1 mf493845 unix-user   1443840 Mar 24 03:37 result.tar.gz
03:37:54 (28018): run_atlas exited; CPU time 53173.612275
03:37:54 (28018): called boinc_finish(0)

</stderr_txt>
]]>

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