Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:17:49 (3082663): wrapper (7.7.26015): starting
17:17:49 (3082663): wrapper: running run_atlas (--nthreads 3)
[2026-03-24 17:17:49] Arguments: --nthreads 3
[2026-03-24 17:17:49] Threads: 3
[2026-03-24 17:17:49] Checking for CVMFS
[2026-03-24 17:17:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-24 17:17:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-24 17:17:50] Running cvmfs_config stat atlas.cern.ch
[2026-03-24 17:17:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-24 17:17:50] 2.9.2.0 2814488 2890 77948 157651 3 49 30980481 36864000 0 130560 0 1011176 99.980 98400 10412 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-24 17:17:50] CVMFS is ok
[2026-03-24 17:17:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-24 17:17:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-24 17:17:50] Further information can be found at the LHC@home message board.
[2026-03-24 17:17:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-24 17:17:50] Checking for apptainer binary...
[2026-03-24 17:17:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-24 17:17:50] Running /usr/bin/apptainer --version
[2026-03-24 17:17:50] apptainer version 1.4.1-1.1
[2026-03-24 17:17:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-24 17:17:50] atlasA223b
[2026-03-24 17:17:50] apptainer works
[2026-03-24 17:17:50] Set ATHENA_PROC_NUMBER=3
[2026-03-24 17:17:50] Set ATHENA_CORE_NUMBER=3
[2026-03-24 17:17:50] Starting ATLAS job with PandaID=7056950044
[2026-03-24 17:17:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-24 20:37:23]  *** The last 200 lines of the pilot log: ***
[2026-03-24 20:37:23] 2026-03-24 19:36:47,305 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-24 20:37:23] 2026-03-24 19:36:47,305 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-24 20:37:23] 2026-03-24 19:36:47,305 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-24 20:37:23] 2026-03-24 19:36:47,305 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-24 20:37:23] 2026-03-24 19:36:47,305 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-24 20:37:23] 2026-03-24 19:36:47,305 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-24 20:37:23] 2026-03-24 19:36:47,306 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-24 20:37:23] 2026-03-24 19:36:47,306 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-24 20:37:23] 2026-03-24 19:36:47,306 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-24 20:37:23] 2026-03-24 19:36:47,306 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-24 20:37:23] 2026-03-24 19:36:47,306 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-24 20:37:23] 2026-03-24 19:36:47,306 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-24 20:37:23] 2026-03-24 19:36:47,306 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-24 20:37:23] 2026-03-24 19:36:47,306 | INFO     | job 7056950044 has completed (purged errors)
[2026-03-24 20:37:23] 2026-03-24 19:36:47,306 | INFO     | overall cleanup function is called
[2026-03-24 20:37:23] 2026-03-24 19:36:48,313 | INFO     | --- collectZombieJob: --- 10, [3091145]
[2026-03-24 20:37:23] 2026-03-24 19:36:48,313 | INFO     | zombie collector waiting for pid 3091145
[2026-03-24 20:37:23] 2026-03-24 19:36:48,313 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-24 20:37:23] 2026-03-24 19:36:48,313 | INFO     | collected zombie processes
[2026-03-24 20:37:23] 2026-03-24 19:36:48,313 | INFO     | will attempt to kill all subprocesses of pid=3091145
[2026-03-24 20:37:23] 2026-03-24 19:36:48,355 | INFO     | process IDs to be killed: [3091145] (in reverse order)
[2026-03-24 20:37:23] 2026-03-24 19:36:48,381 | WARNING  | found no corresponding commands to process id(s)
[2026-03-24 20:37:23] 2026-03-24 19:36:48,381 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-24 20:37:23] 2026-03-24 19:36:48,382 | INFO     | did not find any defunct processes belonging to 3091145
[2026-03-24 20:37:23] 2026-03-24 19:36:48,383 | INFO     | did not find any defunct processes belonging to 3091145
[2026-03-24 20:37:23] 2026-03-24 19:36:48,383 | INFO     | ready for new job
[2026-03-24 20:37:23] 2026-03-24 19:36:48,383 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-24 20:37:23] 2026-03-24 19:36:48,384 | INFO     | **************************************
[2026-03-24 20:37:23] 2026-03-24 19:36:48,384 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-24 20:37:23] 2026-03-24 19:36:48,384 | INFO     | **************************************
[2026-03-24 20:37:23] 2026-03-24 19:36:48,384 | INFO     | 
[2026-03-24 20:37:23] 2026-03-24 19:36:48,384 | INFO     | architecture information:
[2026-03-24 20:37:23] 2026-03-24 19:36:48,384 | INFO     | executing command: cat /etc/os-release
[2026-03-24 20:37:23] 2026-03-24 19:36:48,393 | INFO     | cat /etc/os-release:
[2026-03-24 20:37:23] NAME="CentOS Linux"
[2026-03-24 20:37:23] VERSION="7 (Core)"
[2026-03-24 20:37:23] ID="centos"
[2026-03-24 20:37:23] ID_LIKE="rhel fedora"
[2026-03-24 20:37:23] VERSION_ID="7"
[2026-03-24 20:37:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-24 20:37:23] ANSI_COLOR="0;31"
[2026-03-24 20:37:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-24 20:37:23] HOME_URL="https://www.centos.org/"
[2026-03-24 20:37:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-24 20:37:23] 
[2026-03-24 20:37:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-24 20:37:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-24 20:37:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-24 20:37:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-24 20:37:23] 
[2026-03-24 20:37:23] 2026-03-24 19:36:48,394 | INFO     | **************************************
[2026-03-24 20:37:23] 2026-03-24 19:36:48,897 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-24 20:37:23] 2026-03-24 19:36:48,910 | INFO     | sufficient remaining disk space (373432516608 B)
[2026-03-24 20:37:23] 2026-03-24 19:36:48,910 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-24 20:37:23] 2026-03-24 19:36:48,910 | INFO     | current server update state: UPDATING_FINAL
[2026-03-24 20:37:23] 2026-03-24 19:36:48,910 | INFO     | update_server=False
[2026-03-24 20:37:23] 2026-03-24 19:36:48,910 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-24 20:37:23] 2026-03-24 19:36:48,910 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-24 20:37:23] 2026-03-24 19:36:48,911 | INFO     | found 0 job(s) in 20 queues
[2026-03-24 20:37:23] 2026-03-24 19:36:48,911 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-24 20:37:23] 2026-03-24 19:36:48,911 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-24 20:37:23] 2026-03-24 19:36:48,911 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-24 20:37:23] 2026-03-24 19:36:48,911 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-24 20:37:23] 2026-03-24 19:36:49,275 | INFO     | all payload control threads have been joined
[2026-03-24 20:37:23] 2026-03-24 19:36:49,605 | INFO     | all data control threads have been joined
[2026-03-24 20:37:23] 2026-03-24 19:36:49,908 | INFO     | all job control threads have been joined
[2026-03-24 20:37:23] 2026-03-24 19:36:49,916 | INFO     | [job] retrieve thread has finished
[2026-03-24 20:37:23] 2026-03-24 19:36:50,094 | INFO     | [data] copytool_in thread has finished
[2026-03-24 20:37:23] 2026-03-24 19:36:50,280 | INFO     | [payload] control thread has finished
[2026-03-24 20:37:23] 2026-03-24 19:36:50,286 | INFO     | [payload] execute_payloads thread has finished
[2026-03-24 20:37:23] 2026-03-24 19:36:50,455 | INFO     | [payload] failed_post thread has finished
[2026-03-24 20:37:23] 2026-03-24 19:36:50,611 | INFO     | [data] control thread has finished
[2026-03-24 20:37:23] 2026-03-24 19:36:50,912 | INFO     | [job] control thread has finished
[2026-03-24 20:37:23] 2026-03-24 19:36:50,916 | INFO     | [data] copytool_out thread has finished
[2026-03-24 20:37:23] 2026-03-24 19:36:50,969 | INFO     | [payload] validate_post thread has finished
[2026-03-24 20:37:23] 2026-03-24 19:36:51,294 | INFO     | [job] create_data_payload thread has finished
[2026-03-24 20:37:23] 2026-03-24 19:36:51,295 | INFO     | [job] validate thread has finished
[2026-03-24 20:37:23] 2026-03-24 19:36:51,331 | INFO     | [payload] validate_pre thread has finished
[2026-03-24 20:37:23] 2026-03-24 19:36:51,536 | WARNING  | process 3091145 can no longer be monitored (due to stat problems) - aborting
[2026-03-24 20:37:23] 2026-03-24 19:36:51,564 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-24 20:37:23] 2026-03-24 19:36:51,599 | INFO     | number of running child processes to parent process 3091145: 1
[2026-03-24 20:37:23] 2026-03-24 19:36:51,599 | INFO     | maximum number of monitored processes: 6
[2026-03-24 20:37:23] 2026-03-24 19:36:51,600 | INFO     | aborting job monitoring since job object (job id=7056950044) has expired
[2026-03-24 20:37:23] 2026-03-24 19:36:51,600 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-24 20:37:23] 2026-03-24 19:36:51,600 | INFO     | will abort loop
[2026-03-24 20:37:23] 2026-03-24 19:36:51,858 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-24 20:37:23] 2026-03-24 19:36:52,605 | INFO     | [job] job monitor thread has finished
[2026-03-24 20:37:23] 2026-03-24 19:36:52,862 | INFO     | [job] queue monitor thread has finished
[2026-03-24 20:37:23] 2026-03-24 19:36:52,918 | INFO     | [data] queue_monitor thread has finished
[2026-03-24 20:37:23] 2026-03-24 19:36:59,048 | INFO     | job.realtimelogging is not enabled
[2026-03-24 20:37:23] 2026-03-24 19:37:00,054 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-24 20:37:23] 2026-03-24 19:37:16,083 | INFO     | [monitor] cgroup control has ended
[2026-03-24 20:37:23] 2026-03-24 19:37:17,926 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140549307754304)>', '<ExcThread(monitor, started 140548811765504)>']
[2026-03-24 20:37:23] 2026-03-24 19:37:18,066 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-24 20:37:23] 2026-03-24 19:37:18,066 | INFO     | [monitor] control thread has ended
[2026-03-24 20:37:23] 2026-03-24 19:37:22,932 | INFO     | all workflow threads have been joined
[2026-03-24 20:37:23] 2026-03-24 19:37:22,932 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-24 20:37:23] 2026-03-24 19:37:22,932 | INFO     | traces error code: 0
[2026-03-24 20:37:23] 2026-03-24 19:37:22,932 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-24 20:37:23] 2026-03-24 19:37:22,983 [wrapper] ==== pilot stdout END ====
[2026-03-24 20:37:23] 2026-03-24 19:37:22,986 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-24 20:37:23] 2026-03-24 19:37:22,988 [wrapper] pilotpid: 3086714
[2026-03-24 20:37:23] 2026-03-24 19:37:22,990 [wrapper] Pilot exit status: 0
[2026-03-24 20:37:23] 2026-03-24 19:37:22,998 [wrapper] pandaids: 7056950044
[2026-03-24 20:37:23] 2026-03-24 19:37:23,015 [wrapper] cleanup supervisor_pilot 3097729 3086715
[2026-03-24 20:37:23] 2026-03-24 19:37:23,018 [wrapper] Test setup, not cleaning
[2026-03-24 20:37:23] 2026-03-24 19:37:23,020 [wrapper] apfmon messages muted
[2026-03-24 20:37:23] 2026-03-24 19:37:23,023 [wrapper] ==== wrapper stdout END ====
[2026-03-24 20:37:23] 2026-03-24 19:37:23,025 [wrapper] ==== wrapper stderr END ====
[2026-03-24 20:37:23]  *** Error codes and diagnostics ***
[2026-03-24 20:37:23]     "exeErrorCode": 0,
[2026-03-24 20:37:23]     "exeErrorDiag": "",
[2026-03-24 20:37:23]     "pilotErrorCode": 0,
[2026-03-24 20:37:23]     "pilotErrorDiag": "",
[2026-03-24 20:37:23]  *** Listing of results directory ***
[2026-03-24 20:37:23] total 488408
[2026-03-24 20:37:23] -rwx------ 1 boinc boinc     36322 Mar 22 15:12 runpilot2-wrapper.sh
[2026-03-24 20:37:23] -rw-r--r-- 1 boinc boinc      5111 Mar 22 17:15 queuedata.json
[2026-03-24 20:37:23] -rw-r--r-- 1 boinc boinc    585013 Mar 22 17:16 pilot3.tar.gz
[2026-03-24 20:37:23] -rw-r--r-- 1 boinc boinc       100 Mar 24 17:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-24 20:37:23] -rwxr-xr-x 1 boinc boinc      7986 Mar 24 17:17 run_atlas
[2026-03-24 20:37:23] -rw-r--r-- 1 boinc boinc       105 Mar 24 17:17 job.xml
[2026-03-24 20:37:23] -rw-r--r-- 2 boinc boinc 242759222 Mar 24 17:17 EVNT.49130933._000004.pool.root.1
[2026-03-24 20:37:23] -rw-r--r-- 2 boinc boinc    597538 Mar 24 17:17 input.tar.gz
[2026-03-24 20:37:23] -rw-r--r-- 2 boinc boinc     15845 Mar 24 17:17 start_atlas.sh
[2026-03-24 20:37:23] drwxrwx--x 2 boinc boinc      4096 Mar 24 17:17 shared
[2026-03-24 20:37:23] -rw-r--r-- 1 boinc boinc         0 Mar 24 17:17 boinc_setup_complete
[2026-03-24 20:37:23] -rw-r--r-- 1 boinc boinc      6449 Mar 24 17:17 init_data.xml
[2026-03-24 20:37:23] -rw-r--r-- 1 boinc boinc         0 Mar 24 17:17 boinc_lockfile
[2026-03-24 20:37:23] -rw-r--r-- 1 boinc boinc      2594 Mar 24 17:17 pandaJob.out
[2026-03-24 20:37:23] -rw------- 1 boinc boinc   1010852 Mar 24 17:17 agis_schedconf.cvmfs.json
[2026-03-24 20:37:23] -rw------- 1 boinc boinc       427 Mar 24 17:18 workernode_map.json
[2026-03-24 20:37:23] drwx------ 5 boinc boinc      4096 Mar 24 17:18 pilot3
[2026-03-24 20:37:23] -rw------- 1 boinc boinc        95 Mar 24 20:35 pilot_heartbeat.json
[2026-03-24 20:37:23] -rw------- 1 boinc boinc 249395683 Mar 24 20:36 HITS.49179225._000076.pool.root.1
[2026-03-24 20:37:23] -rw-r--r-- 1 boinc boinc       531 Mar 24 20:36 boinc_task_state.xml
[2026-03-24 20:37:23] -rw------- 1 boinc boinc      1015 Mar 24 20:36 memory_monitor_summary.json
[2026-03-24 20:37:23] -rw------- 1 boinc boinc   1511579 Mar 24 20:36 agis_ddmendpoints.agis.ALL.json
[2026-03-24 20:37:23] -rw------- 1 boinc boinc    333417 Mar 24 20:36 log.49179225._000076.job.log.tgz.1
[2026-03-24 20:37:23] -rw------- 1 boinc boinc      6303 Mar 24 20:36 heartbeat.json
[2026-03-24 20:37:23] -rw-r--r-- 1 boinc boinc      8192 Mar 24 20:37 boinc_mmap_file
[2026-03-24 20:37:23] -rw-r--r-- 1 boinc boinc        28 Mar 24 20:37 wrapper_checkpoint.txt
[2026-03-24 20:37:23] -rw------- 1 boinc boinc      5148 Mar 24 20:37 pilotlog.txt
[2026-03-24 20:37:23] -rw------- 1 boinc boinc   1685846 Mar 24 20:37 log.49179225._000076.job.log.1
[2026-03-24 20:37:23] -rw------- 1 boinc boinc       357 Mar 24 20:37 output.list
[2026-03-24 20:37:23] -rw-r--r-- 1 boinc boinc       620 Mar 24 20:37 runtime_log
[2026-03-24 20:37:23] -rw------- 1 boinc boinc   2037760 Mar 24 20:37 result.tar.gz
[2026-03-24 20:37:23] -rw------- 1 boinc boinc       664 Mar 24 20:37 tqANDm1iYO9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmgv3LDmt4T60n.diag
[2026-03-24 20:37:23] -rw-r--r-- 1 boinc boinc      8917 Mar 24 20:37 runtime_log.err
[2026-03-24 20:37:23] -rw-r--r-- 1 boinc boinc     12791 Mar 24 20:37 stderr.txt
[2026-03-24 20:37:23] HITS file was successfully produced:
[2026-03-24 20:37:23] -rw------- 1 boinc boinc 249395683 Mar 24 20:36 shared/HITS.pool.root.1
[2026-03-24 20:37:23]  *** Contents of shared directory: ***
[2026-03-24 20:37:23] total 483224
[2026-03-24 20:37:23] -rw-r--r-- 2 boinc boinc 242759222 Mar 24 17:17 ATLAS.root_0
[2026-03-24 20:37:23] -rw-r--r-- 2 boinc boinc    597538 Mar 24 17:17 input.tar.gz
[2026-03-24 20:37:23] -rw-r--r-- 2 boinc boinc     15845 Mar 24 17:17 start_atlas.sh
[2026-03-24 20:37:23] -rw------- 1 boinc boinc 249395683 Mar 24 20:36 HITS.pool.root.1
[2026-03-24 20:37:23] -rw------- 1 boinc boinc   2037760 Mar 24 20:37 result.tar.gz
20:37:24 (3082663): run_atlas exited; CPU time 34520.232680
20:37:24 (3082663): called boinc_finish(0)

</stderr_txt>
]]>

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