Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:09:05 (1934545): wrapper (7.7.26015): starting
16:09:05 (1934545): wrapper: running run_atlas (--nthreads 8)
[2026-03-23 16:09:06] Arguments: --nthreads 8
[2026-03-23 16:09:06] Threads: 8
[2026-03-23 16:09:06] Checking for CVMFS
[2026-03-23 16:09:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-23 16:09:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-23 16:09:06] Running cvmfs_config stat atlas.cern.ch
[2026-03-23 16:09:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-23 16:09:06] 2.13.3.0 12213 198991 445392 157618 2 595 22072798 40960000 32651 16776704 0 1438374726 99.718 1109676023 34071 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-23 16:09:06] CVMFS is ok
[2026-03-23 16:09:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-23 16:09:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-23 16:09:06] Further information can be found at the LHC@home message board.
[2026-03-23 16:09:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-23 16:09:06] Checking for apptainer binary...
[2026-03-23 16:09:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-23 16:09:06] Running /usr/bin/apptainer --version
[2026-03-23 16:09:07] apptainer version 1.4.5-2.el9
[2026-03-23 16:09:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-23 16:09:07] c7-3-35.aglt2.org
[2026-03-23 16:09:07] apptainer works
[2026-03-23 16:09:07] Set ATHENA_PROC_NUMBER=8
[2026-03-23 16:09:07] Set ATHENA_CORE_NUMBER=8
[2026-03-23 16:09:07] Starting ATLAS job with PandaID=7056055244
[2026-03-23 16:09:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
18:20:11 (1934545): BOINC client no longer exists - exiting
18:20:11 (1934545): timer handler: client dead, exiting
18:28:44 (2676082): wrapper (7.7.26015): starting
18:28:44 (2676082): wrapper: running run_atlas (--nthreads 9)
[2026-03-23 18:28:44] Arguments: --nthreads 9
[2026-03-23 18:28:44] Threads: 9
[2026-03-23 18:28:44] This job has been restarted, cleaning up previous attempt
[2026-03-23 18:28:44] Checking for CVMFS
[2026-03-23 18:28:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-23 18:28:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-23 18:28:44] Running cvmfs_config stat atlas.cern.ch
[2026-03-23 18:28:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-23 18:28:45] 2.13.3.0 12213 199131 483472 157618 2 1173 28572051 40960001 31007 16776704 0 1439616715 99.718 1111742189 34062 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-23 18:28:45] CVMFS is ok
[2026-03-23 18:28:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-23 18:28:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-23 18:28:45] Further information can be found at the LHC@home message board.
[2026-03-23 18:28:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-23 18:28:45] Checking for apptainer binary...
[2026-03-23 18:28:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-23 18:28:45] Running /usr/bin/apptainer --version
[2026-03-23 18:28:45] apptainer version 1.4.5-2.el9
[2026-03-23 18:28:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-23 18:28:45] c7-3-35.aglt2.org
[2026-03-23 18:28:45] apptainer works
[2026-03-23 18:28:45] Set ATHENA_PROC_NUMBER=9
[2026-03-23 18:28:45] Set ATHENA_CORE_NUMBER=9
[2026-03-23 18:28:45] Starting ATLAS job with PandaID=7056055244
[2026-03-23 18:28:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-23 21:08:29]  *** The last 200 lines of the pilot log: ***
[2026-03-23 21:08:29] 2026-03-24 01:07:17,742 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-23 21:08:29] 2026-03-24 01:07:17,742 | INFO     | log transfer has been attempted: DONE
[2026-03-23 21:08:29] 2026-03-24 01:07:17,742 | INFO     | job 7056055244 has finished - writing final server update
[2026-03-23 21:08:29] 2026-03-24 01:07:17,743 | INFO     | total number of processed events: 400 (read)
[2026-03-23 21:08:29] 2026-03-24 01:07:17,758 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7056055244/memory_monitor_summary.json (trf name=prmon)
[2026-03-23 21:08:29] 2026-03-24 01:07:17,759 | INFO     | extracted standard info from prmon json
[2026-03-23 21:08:29] 2026-03-24 01:07:17,759 | INFO     | extracted standard memory fields from prmon json
[2026-03-23 21:08:29] 2026-03-24 01:07:17,759 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-23 21:08:29] 2026-03-24 01:07:17,760 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-23 21:08:29] 2026-03-24 01:07:17,760 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-23 21:08:29] 2026-03-24 01:07:17,763 | INFO     | fitting pss+swap vs Time
[2026-03-23 21:08:29] 2026-03-24 01:07:17,763 | INFO     | sum of square deviations: 1154695969.5870936
[2026-03-23 21:08:29] 2026-03-24 01:07:17,764 | INFO     | sum of deviations: -11327384370.019358
[2026-03-23 21:08:29] 2026-03-24 01:07:17,764 | INFO     | mean x: 1774309676.0516129
[2026-03-23 21:08:29] 2026-03-24 01:07:17,764 | INFO     | mean y: 2510945.877419355
[2026-03-23 21:08:29] 2026-03-24 01:07:17,764 | INFO     | intersect: 17408207528.7347
[2026-03-23 21:08:29] 2026-03-24 01:07:17,764 | INFO     | chi2: 3.8294711599795264
[2026-03-23 21:08:29] 2026-03-24 01:07:17,765 | INFO     | sum of square deviations: 1046519637.0733353
[2026-03-23 21:08:29] 2026-03-24 01:07:17,766 | INFO     | sum of deviations: 19114229969.966667
[2026-03-23 21:08:29] 2026-03-24 01:07:17,766 | INFO     | mean x: 1774309523.5533333
[2026-03-23 21:08:29] 2026-03-24 01:07:17,766 | INFO     | mean y: 2553321.566666667
[2026-03-23 21:08:29] 2026-03-24 01:07:17,766 | INFO     | intersect: -32404445142.355927
[2026-03-23 21:08:29] 2026-03-24 01:07:17,766 | INFO     | chi2: 1.5509520260608833
[2026-03-23 21:08:29] 2026-03-24 01:07:17,766 | INFO     | current chi2=1.5509520260608833 (change=59.4995768013781 %)
[2026-03-23 21:08:29] 2026-03-24 01:07:17,767 | INFO     | sum of square deviations: 945311150.6620657
[2026-03-23 21:08:29] 2026-03-24 01:07:17,767 | INFO     | sum of deviations: 18833858718.43448
[2026-03-23 21:08:29] 2026-03-24 01:07:17,767 | INFO     | mean x: 1774309371.048276
[2026-03-23 21:08:29] 2026-03-24 01:07:17,767 | INFO     | mean y: 2552898.9379310347
[2026-03-23 21:08:29] 2026-03-24 01:07:17,767 | INFO     | intersect: -35347809776.58251
[2026-03-23 21:08:29] 2026-03-24 01:07:17,768 | INFO     | chi2: 1.551986261980128
[2026-03-23 21:08:29] 2026-03-24 01:07:17,768 | INFO     | current chi2=1.551986261980128 (change=-0.06668394004883064 %)
[2026-03-23 21:08:29] 2026-03-24 01:07:17,768 | INFO     | right removable region: 144
[2026-03-23 21:08:29] 2026-03-24 01:07:17,768 | INFO     | sum of square deviations: 1046514757.0733353
[2026-03-23 21:08:29] 2026-03-24 01:07:17,769 | INFO     | sum of deviations: -35941091226.81334
[2026-03-23 21:08:29] 2026-03-24 01:07:17,769 | INFO     | mean x: 1774309828.5533333
[2026-03-23 21:08:29] 2026-03-24 01:07:17,769 | INFO     | mean y: 2545175.2266666666
[2026-03-23 21:08:29] 2026-03-24 01:07:17,769 | INFO     | intersect: 60938744098.027054
[2026-03-23 21:08:29] 2026-03-24 01:07:17,770 | INFO     | chi2: 2.3854247555636574
[2026-03-23 21:08:29] 2026-03-24 01:07:17,770 | INFO     | current chi2=2.3854247555636574 (change=37.70876823690688 %)
[2026-03-23 21:08:29] 2026-03-24 01:07:17,770 | INFO     | sum of square deviations: 945310419.5586221
[2026-03-23 21:08:29] 2026-03-24 01:07:17,771 | INFO     | sum of deviations: -37349935557.62759
[2026-03-23 21:08:29] 2026-03-24 01:07:17,771 | INFO     | mean x: 1774309981.0551724
[2026-03-23 21:08:29] 2026-03-24 01:07:17,771 | INFO     | mean y: 2547231.703448276
[2026-03-23 21:08:29] 2026-03-24 01:07:17,771 | INFO     | intersect: 70106887647.84804
[2026-03-23 21:08:29] 2026-03-24 01:07:17,771 | INFO     | chi2: 2.361251668455496
[2026-03-23 21:08:29] 2026-03-24 01:07:17,771 | INFO     | current chi2=2.361251668455496 (change=1.013366154257481 %)
[2026-03-23 21:08:29] 2026-03-24 01:07:17,772 | INFO     | left removable region: 20
[2026-03-23 21:08:29] 2026-03-24 01:07:17,772 | INFO     | sum of square deviations: 591194072.6048379
[2026-03-23 21:08:29] 2026-03-24 01:07:17,772 | INFO     | sum of deviations: -7677300340.322579
[2026-03-23 21:08:29] 2026-03-24 01:07:17,772 | INFO     | mean x: 1774309950.5564516
[2026-03-23 21:08:29] 2026-03-24 01:07:17,772 | INFO     | mean y: 2595876.9032258065
[2026-03-23 21:08:29] 2026-03-24 01:07:17,772 | INFO     | intersect: 23043947301.86897
[2026-03-23 21:08:29] 2026-03-24 01:07:17,773 | INFO     | chi2: 0.008088109394736493
[2026-03-23 21:08:29] 2026-03-24 01:07:17,773 | INFO     | current memory leak: -12.99 B/s (using 124 data points, chi2=0.01)
[2026-03-23 21:08:29] 2026-03-24 01:07:17,773 | INFO     | could have reported an average CPU frequency of 3250 MHz (9 samples)
[2026-03-23 21:08:29] 2026-03-24 01:07:17,773 | INFO     | ..............................
[2026-03-23 21:08:29] 2026-03-24 01:07:17,774 | INFO     | . Timing measurements:
[2026-03-23 21:08:29] 2026-03-24 01:07:17,774 | INFO     | . get job = 0 s
[2026-03-23 21:08:29] 2026-03-24 01:07:17,774 | INFO     | . initial setup = 1 s
[2026-03-23 21:08:29] 2026-03-24 01:07:17,774 | INFO     | . payload setup = 16 s
[2026-03-23 21:08:29] 2026-03-24 01:07:17,774 | INFO     | . stage-in = 0 s
[2026-03-23 21:08:29] 2026-03-24 01:07:17,774 | INFO     | . payload execution = 9449 s
[2026-03-23 21:08:29] 2026-03-24 01:07:17,774 | INFO     | . stage-out = 7 s
[2026-03-23 21:08:29] 2026-03-24 01:07:17,774 | INFO     | . log creation = 0 s
[2026-03-23 21:08:29] 2026-03-24 01:07:17,774 | INFO     | ..............................
[2026-03-23 21:08:29] 2026-03-24 01:07:18,256 | INFO     | 
[2026-03-23 21:08:29] 2026-03-24 01:07:18,279 | INFO     | job summary report
[2026-03-23 21:08:29] 2026-03-24 01:07:18,279 | INFO     | --------------------------------------------------
[2026-03-23 21:08:29] 2026-03-24 01:07:18,279 | INFO     | PanDA job id: 7056055244
[2026-03-23 21:08:29] 2026-03-24 01:07:18,279 | INFO     | task id: 48967094
[2026-03-23 21:08:29] 2026-03-24 01:07:18,279 | INFO     | errors: (none)
[2026-03-23 21:08:29] 2026-03-24 01:07:18,279 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-23 21:08:29] 2026-03-24 01:07:18,279 | INFO     | pilot state: finished 
[2026-03-23 21:08:29] 2026-03-24 01:07:18,280 | INFO     | transexitcode: 0
[2026-03-23 21:08:29] 2026-03-24 01:07:18,280 | INFO     | exeerrorcode: 0
[2026-03-23 21:08:29] 2026-03-24 01:07:18,280 | INFO     | exeerrordiag: 
[2026-03-23 21:08:29] 2026-03-24 01:07:18,280 | INFO     | exitcode: 0
[2026-03-23 21:08:29] 2026-03-24 01:07:18,280 | INFO     | exitmsg: OK
[2026-03-23 21:08:29] 2026-03-24 01:07:18,280 | INFO     | cpuconsumptiontime: 38979 s
[2026-03-23 21:08:29] 2026-03-24 01:07:18,280 | INFO     | nevents: 400
[2026-03-23 21:08:29] 2026-03-24 01:07:18,280 | INFO     | neventsw: 0
[2026-03-23 21:08:29] 2026-03-24 01:07:18,280 | INFO     | pid: 2708387
[2026-03-23 21:08:29] 2026-03-24 01:07:18,280 | INFO     | pgrp: 2708387
[2026-03-23 21:08:29] 2026-03-24 01:07:18,280 | INFO     | corecount: 9
[2026-03-23 21:08:29] 2026-03-24 01:07:18,280 | INFO     | event service: False
[2026-03-23 21:08:29] 2026-03-24 01:07:18,280 | INFO     | sizes: {0: 2280166, 1: 2280226, 11: 2280254, 9471: 2308733, 9472: 2308732, 9481: 2317786, 9484: 2318228}
[2026-03-23 21:08:29] 2026-03-24 01:07:18,280 | INFO     | --------------------------------------------------
[2026-03-23 21:08:29] 2026-03-24 01:07:18,280 | INFO     | 
[2026-03-23 21:08:29] 2026-03-24 01:07:18,280 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-23 21:08:29] 2026-03-24 01:07:18,541 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-23 21:08:29] 2026-03-24 01:07:18,541 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-23 21:08:29] 2026-03-24 01:07:18,541 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-23 21:08:29] 2026-03-24 01:07:18,542 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-23 21:08:29] 2026-03-24 01:07:18,542 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-23 21:08:29] 2026-03-24 01:07:18,542 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-23 21:08:29] 2026-03-24 01:07:18,542 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-23 21:08:29] 2026-03-24 01:07:18,542 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-23 21:08:29] 2026-03-24 01:07:18,542 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-23 21:08:29] 2026-03-24 01:07:18,542 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-23 21:08:29] 2026-03-24 01:07:18,542 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-23 21:08:29] 2026-03-24 01:07:18,542 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-23 21:08:29] 2026-03-24 01:07:18,542 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-23 21:08:29] 2026-03-24 01:07:18,542 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-23 21:08:29] 2026-03-24 01:07:18,542 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-23 21:08:29] 2026-03-24 01:07:18,542 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-23 21:08:29] 2026-03-24 01:07:18,543 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-23 21:08:29] 2026-03-24 01:07:18,543 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-23 21:08:29] 2026-03-24 01:07:18,543 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-23 21:08:29] 2026-03-24 01:07:18,543 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-23 21:08:29] 2026-03-24 01:07:18,543 | INFO     | job 7056055244 has completed (purged errors)
[2026-03-23 21:08:29] 2026-03-24 01:07:18,543 | INFO     | overall cleanup function is called
[2026-03-23 21:08:29] 2026-03-24 01:07:19,556 | INFO     | --- collectZombieJob: --- 10, [2708387]
[2026-03-23 21:08:29] 2026-03-24 01:07:19,575 | INFO     | zombie collector waiting for pid 2708387
[2026-03-23 21:08:29] 2026-03-24 01:07:19,575 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-23 21:08:29] 2026-03-24 01:07:19,575 | INFO     | collected zombie processes
[2026-03-23 21:08:29] 2026-03-24 01:07:19,575 | INFO     | will attempt to kill all subprocesses of pid=2708387
[2026-03-23 21:08:29] 2026-03-24 01:07:20,993 | INFO     | process IDs to be killed: [2708387] (in reverse order)
[2026-03-23 21:08:29] 2026-03-24 01:07:21,483 | WARNING  | found no corresponding commands to process id(s)
[2026-03-23 21:08:29] 2026-03-24 01:07:21,484 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-23 21:08:29] 2026-03-24 01:07:21,574 | INFO     | did not find any defunct processes belonging to 2708387
[2026-03-23 21:08:29] 2026-03-24 01:07:21,628 | INFO     | did not find any defunct processes belonging to 2708387
[2026-03-23 21:08:29] 2026-03-24 01:07:21,629 | INFO     | ready for new job
[2026-03-23 21:08:29] 2026-03-24 01:07:21,629 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-23 21:08:29] 2026-03-24 01:07:21,631 | INFO     | **************************************
[2026-03-23 21:08:29] 2026-03-24 01:07:21,632 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-23 21:08:29] 2026-03-24 01:07:21,632 | INFO     | **************************************
[2026-03-23 21:08:29] 2026-03-24 01:07:21,632 | INFO     | 
[2026-03-23 21:08:29] 2026-03-24 01:07:21,638 | INFO     | architecture information:
[2026-03-23 21:08:29] 2026-03-24 01:07:21,638 | INFO     | executing command: cat /etc/os-release
[2026-03-23 21:08:29] 2026-03-24 01:07:21,679 | INFO     | cat /etc/os-release:
[2026-03-23 21:08:29] NAME="CentOS Linux"
[2026-03-23 21:08:29] VERSION="7 (Core)"
[2026-03-23 21:08:29] ID="centos"
[2026-03-23 21:08:29] ID_LIKE="rhel fedora"
[2026-03-23 21:08:29] VERSION_ID="7"
[2026-03-23 21:08:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-23 21:08:29] ANSI_COLOR="0;31"
[2026-03-23 21:08:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-23 21:08:29] HOME_URL="https://www.centos.org/"
[2026-03-23 21:08:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-23 21:08:29] 
[2026-03-23 21:08:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-23 21:08:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-23 21:08:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-23 21:08:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-23 21:08:29] 
[2026-03-23 21:08:29] 2026-03-24 01:07:21,679 | INFO     | **************************************
[2026-03-23 21:08:29] 2026-03-24 01:07:22,184 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-23 21:08:29] 2026-03-24 01:07:22,273 | INFO     | sufficient remaining disk space (127020302336 B)
[2026-03-23 21:08:29] 2026-03-24 01:07:22,273 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-23 21:08:29] 2026-03-24 01:07:22,273 | INFO     | current server update state: UPDATING_FINAL
[2026-03-23 21:08:29] 2026-03-24 01:07:22,273 | INFO     | update_server=False
[2026-03-23 21:08:29] 2026-03-24 01:07:22,273 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-23 21:08:29] 2026-03-24 01:07:22,352 | INFO     | all payload control threads have been joined
[2026-03-23 21:08:29] 2026-03-24 01:07:22,902 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-23 21:08:29] 2026-03-24 01:07:23,010 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-23 21:08:29] 2026-03-24 01:07:23,010 | INFO     | aborting loop
[2026-03-23 21:08:29] 2026-03-24 01:07:23,108 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-23 21:08:29] 2026-03-24 01:07:23,126 | INFO     | all data control threads have been joined
[2026-03-23 21:08:29] 2026-03-24 01:07:23,279 | INFO     | [job] retrieve thread has finished
[2026-03-23 21:08:29] 2026-03-24 01:07:23,358 | INFO     | [payload] control thread has finished
[2026-03-23 21:08:29] 2026-03-24 01:07:23,413 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-23 21:08:29] 2026-03-24 01:07:23,638 | INFO     | all job control threads have been joined
[2026-03-23 21:08:29] 2026-03-24 01:07:23,733 | INFO     | [payload] validate_post thread has finished
[2026-03-23 21:08:29] 2026-03-24 01:07:23,749 | INFO     | [payload] failed_post thread has finished
[2026-03-23 21:08:29] 2026-03-24 01:07:23,759 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-23 21:08:29] 2026-03-24 01:07:23,908 | INFO     | [job] queue monitor thread has finished
[2026-03-23 21:08:29] 2026-03-24 01:07:24,016 | INFO     | [job] job monitor thread has finished
[2026-03-23 21:08:29] 2026-03-24 01:07:24,162 | INFO     | [data] control thread has finished
[2026-03-23 21:08:29] 2026-03-24 01:07:24,513 | INFO     | [data] copytool_in thread has finished
[2026-03-23 21:08:29] 2026-03-24 01:07:24,549 | INFO     | [payload] execute_payloads thread has finished
[2026-03-23 21:08:29] 2026-03-24 01:07:24,581 | INFO     | [job] create_data_payload thread has finished
[2026-03-23 21:08:29] 2026-03-24 01:07:24,587 | INFO     | [job] validate thread has finished
[2026-03-23 21:08:29] 2026-03-24 01:07:24,625 | INFO     | [payload] validate_pre thread has finished
[2026-03-23 21:08:29] 2026-03-24 01:07:24,644 | INFO     | [job] control thread has finished
[2026-03-23 21:08:29] 2026-03-24 01:07:25,125 | INFO     | [data] copytool_out thread has finished
[2026-03-23 21:08:29] 2026-03-24 01:07:27,768 | INFO     | [data] queue_monitor thread has finished
[2026-03-23 21:08:29] 2026-03-24 01:07:53,441 | INFO     | PID=2695266 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-23 21:08:29] 2026-03-24 01:07:53,456 | INFO     | .. there are 52 such processes running
[2026-03-23 21:08:29] 2026-03-24 01:07:53,461 | INFO     | found 0 job(s) in 20 queues
[2026-03-23 21:08:29] 2026-03-24 01:07:53,461 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-23 21:08:29] 2026-03-24 01:07:53,461 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-23 21:08:29] 2026-03-24 01:08:19,571 | INFO     | [monitor] cgroup control has ended
[2026-03-23 21:08:29] 2026-03-24 01:08:21,706 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139654735341376)>', '<ExcThread(monitor, started 139654233822976)>']
[2026-03-23 21:08:29] 2026-03-24 01:08:21,775 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-23 21:08:29] 2026-03-24 01:08:21,775 | INFO     | [monitor] control thread has ended
[2026-03-23 21:08:29] 2026-03-24 01:08:26,734 | INFO     | all workflow threads have been joined
[2026-03-23 21:08:29] 2026-03-24 01:08:26,734 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-23 21:08:29] 2026-03-24 01:08:26,735 | INFO     | traces error code: 0
[2026-03-23 21:08:29] 2026-03-24 01:08:26,735 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-23 21:08:29] 2026-03-24 01:08:28,543 [wrapper] ==== pilot stdout END ====
[2026-03-23 21:08:29] 2026-03-24 01:08:28,547 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-23 21:08:29] 2026-03-24 01:08:28,550 [wrapper] pilotpid: 2695266
[2026-03-23 21:08:29] 2026-03-24 01:08:28,555 [wrapper] Pilot exit status: 0
[2026-03-23 21:08:29] 2026-03-24 01:08:28,637 [wrapper] pandaids: 7056055244 7056055244
[2026-03-23 21:08:29] 2026-03-24 01:08:28,890 [wrapper] cleanup supervisor_pilot 3510994 2695267
[2026-03-23 21:08:29] 2026-03-24 01:08:28,931 [wrapper] Test setup, not cleaning
[2026-03-23 21:08:29] 2026-03-24 01:08:28,945 [wrapper] apfmon messages muted
[2026-03-23 21:08:29] 2026-03-24 01:08:28,964 [wrapper] ==== wrapper stdout END ====
[2026-03-23 21:08:29] 2026-03-24 01:08:28,982 [wrapper] ==== wrapper stderr END ====
[2026-03-23 21:08:29]  *** Error codes and diagnostics ***
[2026-03-23 21:08:29]     "exeErrorCode": 0,
[2026-03-23 21:08:29]     "exeErrorDiag": "",
[2026-03-23 21:08:29]     "pilotErrorCode": 0,
[2026-03-23 21:08:29]     "pilotErrorDiag": "",
[2026-03-23 21:08:29]  *** Listing of results directory ***
[2026-03-23 21:08:29] total 633556
[2026-03-23 21:08:29] drwx------. 5 boincer umatlas      4096 Mar 10 12:00 pilot3
[2026-03-23 21:08:29] -rw-r--r--. 1 boincer umatlas    585013 Mar 15 13:37 pilot3.tar.gz
[2026-03-23 21:08:29] -rw-r--r--. 1 boincer umatlas      5111 Mar 15 13:55 queuedata.json
[2026-03-23 21:08:29] -rwx------. 1 boincer umatlas     36322 Mar 15 13:55 runpilot2-wrapper.sh
[2026-03-23 21:08:29] -rw-r--r--. 1 boincer umatlas       100 Mar 23 16:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-23 21:08:29] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 23 16:09 run_atlas
[2026-03-23 21:08:29] -rw-r--r--. 1 boincer umatlas       105 Mar 23 16:09 job.xml
[2026-03-23 21:08:29] -rw-r--r--. 3 boincer umatlas 217081893 Mar 23 16:09 EVNT.48967092._000405.pool.root.1
[2026-03-23 21:08:29] -rw-r--r--. 3 boincer umatlas 217081893 Mar 23 16:09 ATLAS.root_0
[2026-03-23 21:08:29] -rw-r--r--. 2 boincer umatlas     15845 Mar 23 16:09 start_atlas.sh
[2026-03-23 21:08:29] drwxrwx--x. 2 boincer umatlas      4096 Mar 23 16:09 shared
[2026-03-23 21:08:29] -rw-r--r--. 2 boincer umatlas    597536 Mar 23 16:09 input.tar.gz
[2026-03-23 21:08:29] -rw-r--r--. 1 boincer umatlas         0 Mar 23 16:09 boinc_lockfile
[2026-03-23 21:08:29] -rw-r--r--. 1 boincer umatlas      2599 Mar 23 18:28 pandaJob.out
[2026-03-23 21:08:29] -rw-------. 1 boincer umatlas        57 Mar 23 18:28 setup.sh.local
[2026-03-23 21:08:29] -rw-------. 1 boincer umatlas   1010851 Mar 23 18:29 agis_schedconf.cvmfs.json
[2026-03-23 21:08:29] -rw-------. 1 boincer umatlas       428 Mar 23 18:29 workernode_map.json
[2026-03-23 21:08:29] -rw-r--r--. 1 boincer umatlas      6948 Mar 23 21:02 init_data.xml
[2026-03-23 21:08:29] -rw-------. 1 boincer umatlas 207518740 Mar 23 21:03 HITS.48967094._009746.pool.root.1
[2026-03-23 21:08:29] -rw-r--r--. 1 boincer umatlas       530 Mar 23 21:03 boinc_task_state.xml
[2026-03-23 21:08:29] -rw-------. 1 boincer umatlas      1051 Mar 23 21:06 memory_monitor_summary.json
[2026-03-23 21:08:29] -rw-------. 1 boincer umatlas   1511579 Mar 23 21:07 agis_ddmendpoints.agis.ALL.json
[2026-03-23 21:08:29] -rw-------. 1 boincer umatlas    399830 Mar 23 21:07 log.48967094._009746.job.log.tgz.1
[2026-03-23 21:08:29] -rw-------. 1 boincer umatlas      6359 Mar 23 21:07 heartbeat.json
[2026-03-23 21:08:29] -rw-------. 1 boincer umatlas        96 Mar 23 21:07 pilot_heartbeat.json
[2026-03-23 21:08:29] -rw-------. 1 boincer umatlas      4821 Mar 23 21:08 pilotlog.txt
[2026-03-23 21:08:29] -rw-r--r--. 1 boincer umatlas        28 Mar 23 21:08 wrapper_checkpoint.txt
[2026-03-23 21:08:29] -rw-r--r--. 1 boincer umatlas      8192 Mar 23 21:08 boinc_mmap_file
[2026-03-23 21:08:29] -rw-------. 1 boincer umatlas   1165114 Mar 23 21:08 log.48967094._009746.job.log.1
[2026-03-23 21:08:29] -rw-------. 1 boincer umatlas       357 Mar 23 21:08 output.list
[2026-03-23 21:08:29] -rw-r--r--. 1 boincer umatlas       620 Mar 23 21:08 runtime_log
[2026-03-23 21:08:29] -rw-------. 1 boincer umatlas   1587200 Mar 23 21:08 result.tar.gz
[2026-03-23 21:08:29] -rw-r--r--. 1 boincer umatlas      9421 Mar 23 21:08 runtime_log.err
[2026-03-23 21:08:29] -rw-------. 1 boincer umatlas       782 Mar 23 21:08 NibKDmLr4L9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmZOvLDmCpVcam.diag
[2026-03-23 21:08:29] -rw-r--r--. 1 boincer umatlas     23433 Mar 23 21:08 stderr.txt
[2026-03-23 21:08:29] HITS file was successfully produced:
[2026-03-23 21:08:29] -rw-------. 1 boincer umatlas 207518740 Mar 23 21:03 shared/HITS.pool.root.1
[2026-03-23 21:08:29]  *** Contents of shared directory: ***
[2026-03-23 21:08:29] total 416808
[2026-03-23 21:08:29] -rw-r--r--. 3 boincer umatlas 217081893 Mar 23 16:09 ATLAS.root_0
[2026-03-23 21:08:29] -rw-r--r--. 2 boincer umatlas     15845 Mar 23 16:09 start_atlas.sh
[2026-03-23 21:08:29] -rw-r--r--. 2 boincer umatlas    597536 Mar 23 16:09 input.tar.gz
[2026-03-23 21:08:29] -rw-------. 1 boincer umatlas 207518740 Mar 23 21:03 HITS.pool.root.1
[2026-03-23 21:08:29] -rw-------. 1 boincer umatlas   1587200 Mar 23 21:08 result.tar.gz
21:08:31 (2676082): run_atlas exited; CPU time 39214.930864
21:08:31 (2676082): called boinc_finish(0)

</stderr_txt>
]]>

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