Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
18:41:46 (4151797): wrapper (7.7.26015): starting
18:41:46 (4151797): wrapper: running run_atlas (--nthreads 12)
[2026-03-23 18:41:46] Arguments: --nthreads 12
[2026-03-23 18:41:46] Threads: 12
[2026-03-23 18:41:46] Checking for CVMFS
[2026-03-23 18:41:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-23 18:41:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-23 18:41:46] Running cvmfs_config stat atlas.cern.ch
[2026-03-23 18:41:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-23 18:41:47] 2.11.0.0 3471227 277 76012 157617 2 114 5657306 6144001 14760 130560 0 2383259 99.997 10945 715 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-03-23 18:41:47] CVMFS is ok
[2026-03-23 18:41:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-23 18:41:47] Checking for apptainer binary...
[2026-03-23 18:41:47] apptainer is not installed, using version from CVMFS
[2026-03-23 18:41:47] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-23 18:41:47] radiat0r
[2026-03-23 18:41:47] apptainer works
[2026-03-23 18:41:47] Set ATHENA_PROC_NUMBER=12
[2026-03-23 18:41:47] Set ATHENA_CORE_NUMBER=12
[2026-03-23 18:41:47] Starting ATLAS job with PandaID=7063039335
[2026-03-23 18:41:47] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/23 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-23 20:19:24]  *** The last 200 lines of the pilot log: ***
[2026-03-23 20:19:24]  domain=
[2026-03-23 20:19:24]  filesize=405989
[2026-03-23 20:19:24]  filetype=log
[2026-03-23 20:19:24]  guid=1ab8b1b9-f241-4ea3-ad7b-6e85bc4d46ab
[2026-03-23 20:19:24]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-23 20:19:24]  is_altstaged=None
[2026-03-23 20:19:24]  is_tar=False
[2026-03-23 20:19:24]  lfn=log.49273765._000060.job.log.tgz.1
[2026-03-23 20:19:24]  mtime=0
[2026-03-23 20:19:24]  protocol_id=None
[2026-03-23 20:19:24]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-23 20:19:24]  replicas=None
[2026-03-23 20:19:24]  scope=mc23_13p6TeV
[2026-03-23 20:19:24]  status=None
[2026-03-23 20:19:24]  status_code=0
[2026-03-23 20:19:24]  storage_token=
[2026-03-23 20:19:24]  surl=/var/lib/boinc/slots/23/PanDA_Pilot-7063039335/log.49273765._000060.job.log.tgz.1
[2026-03-23 20:19:24]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/31/02/log.49273765._000060.job.log.tgz.1
[2026-03-23 20:19:24]  workdir=None
[2026-03-23 20:19:24] ]
[2026-03-23 20:19:24] 2026-03-23 20:18:15,878 | INFO     | transferring file log.49273765._000060.job.log.tgz.1 from /var/lib/boinc/slots/23/PanDA_Pilot-7063039335/log.49273765._000060.job.log.tgz.1 to /var/lib/boinc/slots
[2026-03-23 20:19:24] 2026-03-23 20:18:15,879 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/23/PanDA_Pilot-7063039335/log.49273765._000060.job.log.tgz.1 /var/lib/boinc/slots/23/log.49273765._000060.j
[2026-03-23 20:19:24] 2026-03-23 20:18:15,906 | INFO     | adding to output.list: log.49273765._000060.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/31/02/log.49273765._000060.job.log.tg
[2026-03-23 20:19:24] 2026-03-23 20:18:15,907 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-23 20:19:24] 2026-03-23 20:18:15,907 | INFO     | summary of transferred files:
[2026-03-23 20:19:24] 2026-03-23 20:18:15,907 | INFO     |  -- lfn=log.49273765._000060.job.log.tgz.1, status_code=0, status=transferred
[2026-03-23 20:19:24] 2026-03-23 20:18:15,907 | INFO     | stage-out finished correctly
[2026-03-23 20:19:24] 2026-03-23 20:18:16,352 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-23 20:19:24] 2026-03-23 20:18:16,447 | INFO     | job 7063039335 has state=finished
[2026-03-23 20:19:24] 2026-03-23 20:18:16,448 | INFO     | preparing for final server update for job 7063039335 in state='finished'
[2026-03-23 20:19:24] 2026-03-23 20:18:16,448 | INFO     | reading metadata from: /var/lib/boinc/slots/23/PanDA_Pilot-7063039335/jobReport.json
[2026-03-23 20:19:24] 2026-03-23 20:18:16,451 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/23/workernode_map.json
[2026-03-23 20:19:24] 2026-03-23 20:18:16,451 | INFO     | this job has now completed (state=finished)
[2026-03-23 20:19:24] 2026-03-23 20:18:16,451 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-23 20:19:24] 2026-03-23 20:18:16,451 | INFO     | log transfer has been attempted: DONE
[2026-03-23 20:19:24] 2026-03-23 20:18:16,451 | INFO     | job 7063039335 has finished - writing final server update
[2026-03-23 20:19:24] 2026-03-23 20:18:16,452 | INFO     | total number of processed events: 400 (read)
[2026-03-23 20:19:24] 2026-03-23 20:18:16,523 | INFO     | using path: /var/lib/boinc/slots/23/PanDA_Pilot-7063039335/memory_monitor_summary.json (trf name=prmon)
[2026-03-23 20:19:24] 2026-03-23 20:18:16,523 | INFO     | extracted standard info from prmon json
[2026-03-23 20:19:24] 2026-03-23 20:18:16,523 | INFO     | extracted standard memory fields from prmon json
[2026-03-23 20:19:24] 2026-03-23 20:18:16,523 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-23 20:19:24] 2026-03-23 20:18:16,524 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-23 20:19:24] 2026-03-23 20:18:16,524 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-23 20:19:24] 2026-03-23 20:18:16,526 | INFO     | fitting pss+swap vs Time
[2026-03-23 20:19:24] 2026-03-23 20:18:16,526 | INFO     | sum of square deviations: 204163828.0
[2026-03-23 20:19:24] 2026-03-23 20:18:16,527 | INFO     | sum of deviations: 3517606358.0
[2026-03-23 20:19:24] 2026-03-23 20:18:16,527 | INFO     | mean x: 1774294290.0
[2026-03-23 20:19:24] 2026-03-23 20:18:16,527 | INFO     | mean y: 2704589.471264368
[2026-03-23 20:19:24] 2026-03-23 20:18:16,527 | INFO     | intersect: -30567200650.87864
[2026-03-23 20:19:24] 2026-03-23 20:18:16,527 | INFO     | chi2: 0.05124264589939069
[2026-03-23 20:19:24] 2026-03-23 20:18:16,527 | INFO     | current memory leak: 17.23 B/s (using 87 data points, chi2=0.05)
[2026-03-23 20:19:24] 2026-03-23 20:18:16,527 | INFO     | could have reported an average CPU frequency of 2295 MHz (7 samples)
[2026-03-23 20:19:24] 2026-03-23 20:18:16,528 | INFO     | ..............................
[2026-03-23 20:19:24] 2026-03-23 20:18:16,528 | INFO     | . Timing measurements:
[2026-03-23 20:19:24] 2026-03-23 20:18:16,528 | INFO     | . get job = 0 s
[2026-03-23 20:19:24] 2026-03-23 20:18:16,528 | INFO     | . initial setup = 8 s
[2026-03-23 20:19:24] 2026-03-23 20:18:16,528 | INFO     | . payload setup = 13 s
[2026-03-23 20:19:24] 2026-03-23 20:18:16,528 | INFO     | . stage-in = 0 s
[2026-03-23 20:19:24] 2026-03-23 20:18:16,528 | INFO     | . payload execution = 5735 s
[2026-03-23 20:19:24] 2026-03-23 20:18:16,528 | INFO     | . stage-out = 0 s
[2026-03-23 20:19:24] 2026-03-23 20:18:16,528 | INFO     | . log creation = 0 s
[2026-03-23 20:19:24] 2026-03-23 20:18:16,528 | INFO     | ..............................
[2026-03-23 20:19:24] 2026-03-23 20:18:16,618 | INFO     | 
[2026-03-23 20:19:24] 2026-03-23 20:18:16,618 | INFO     | job summary report
[2026-03-23 20:19:24] 2026-03-23 20:18:16,618 | INFO     | --------------------------------------------------
[2026-03-23 20:19:24] 2026-03-23 20:18:16,619 | INFO     | PanDA job id: 7063039335
[2026-03-23 20:19:24] 2026-03-23 20:18:16,619 | INFO     | task id: 49273765
[2026-03-23 20:19:24] 2026-03-23 20:18:16,619 | INFO     | errors: (none)
[2026-03-23 20:19:24] 2026-03-23 20:18:16,619 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-23 20:19:24] 2026-03-23 20:18:16,619 | INFO     | pilot state: finished 
[2026-03-23 20:19:24] 2026-03-23 20:18:16,619 | INFO     | transexitcode: 0
[2026-03-23 20:19:24] 2026-03-23 20:18:16,619 | INFO     | exeerrorcode: 0
[2026-03-23 20:19:24] 2026-03-23 20:18:16,619 | INFO     | exeerrordiag: 
[2026-03-23 20:19:24] 2026-03-23 20:18:16,619 | INFO     | exitcode: 0
[2026-03-23 20:19:24] 2026-03-23 20:18:16,619 | INFO     | exitmsg: OK
[2026-03-23 20:19:24] 2026-03-23 20:18:16,619 | INFO     | cpuconsumptiontime: 63432 s
[2026-03-23 20:19:24] 2026-03-23 20:18:16,620 | INFO     | nevents: 400
[2026-03-23 20:19:24] 2026-03-23 20:18:16,620 | INFO     | neventsw: 0
[2026-03-23 20:19:24] 2026-03-23 20:18:16,620 | INFO     | pid: 4162152
[2026-03-23 20:19:24] 2026-03-23 20:18:16,620 | INFO     | pgrp: 4162152
[2026-03-23 20:19:24] 2026-03-23 20:18:16,620 | INFO     | corecount: 12
[2026-03-23 20:19:24] 2026-03-23 20:18:16,620 | INFO     | event service: False
[2026-03-23 20:19:24] 2026-03-23 20:18:16,620 | INFO     | sizes: {0: 2279191, 1: 2280310, 12: 2280310, 5752: 2307267, 5754: 2316267, 5755: 2316645}
[2026-03-23 20:19:24] 2026-03-23 20:18:16,620 | INFO     | --------------------------------------------------
[2026-03-23 20:19:24] 2026-03-23 20:18:16,620 | INFO     | 
[2026-03-23 20:19:24] 2026-03-23 20:18:16,620 | INFO     | executing command: ls -lF /var/lib/boinc/slots/23
[2026-03-23 20:19:24] 2026-03-23 20:18:16,658 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-23 20:19:24] 2026-03-23 20:18:16,663 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-23 20:19:24] 2026-03-23 20:18:16,664 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-23 20:19:24] 2026-03-23 20:18:16,664 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-23 20:19:24] 2026-03-23 20:18:16,664 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-23 20:19:24] 2026-03-23 20:18:16,665 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-23 20:19:24] 2026-03-23 20:18:16,665 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-23 20:19:24] 2026-03-23 20:18:16,665 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-23 20:19:24] 2026-03-23 20:18:16,665 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-23 20:19:24] 2026-03-23 20:18:16,665 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-23 20:19:24] 2026-03-23 20:18:16,666 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-23 20:19:24] 2026-03-23 20:18:16,666 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-23 20:19:24] 2026-03-23 20:18:16,666 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-23 20:19:24] 2026-03-23 20:18:16,666 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-23 20:19:24] 2026-03-23 20:18:16,666 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-23 20:19:24] 2026-03-23 20:18:16,667 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-23 20:19:24] 2026-03-23 20:18:16,667 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-23 20:19:24] 2026-03-23 20:18:16,667 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-23 20:19:24] 2026-03-23 20:18:16,667 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-23 20:19:24] 2026-03-23 20:18:16,667 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-23 20:19:24] 2026-03-23 20:18:16,668 | INFO     | job 7063039335 has completed (purged errors)
[2026-03-23 20:19:24] 2026-03-23 20:18:16,668 | INFO     | overall cleanup function is called
[2026-03-23 20:19:24] 2026-03-23 20:18:17,547 | INFO     | PID=4156529 has CPU usage=24.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-23 20:19:24] 2026-03-23 20:18:17,547 | INFO     | .. there are 15 such processes running
[2026-03-23 20:19:24] 2026-03-23 20:18:17,678 | INFO     | --- collectZombieJob: --- 10, [4162152]
[2026-03-23 20:19:24] 2026-03-23 20:18:17,678 | INFO     | zombie collector waiting for pid 4162152
[2026-03-23 20:19:24] 2026-03-23 20:18:17,678 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-23 20:19:24] 2026-03-23 20:18:17,679 | INFO     | collected zombie processes
[2026-03-23 20:19:24] 2026-03-23 20:18:17,679 | INFO     | will attempt to kill all subprocesses of pid=4162152
[2026-03-23 20:19:24] 2026-03-23 20:18:18,440 | INFO     | process IDs to be killed: [4162152] (in reverse order)
[2026-03-23 20:19:24] 2026-03-23 20:18:18,655 | WARNING  | found no corresponding commands to process id(s)
[2026-03-23 20:19:24] 2026-03-23 20:18:18,655 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-23 20:19:24] 2026-03-23 20:18:18,680 | INFO     | did not find any defunct processes belonging to 4162152
[2026-03-23 20:19:24] 2026-03-23 20:18:18,703 | INFO     | did not find any defunct processes belonging to 4162152
[2026-03-23 20:19:24] 2026-03-23 20:18:18,703 | INFO     | ready for new job
[2026-03-23 20:19:24] 2026-03-23 20:18:18,704 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-23 20:19:24] 2026-03-23 20:18:18,706 | INFO     | **************************************
[2026-03-23 20:19:24] 2026-03-23 20:18:18,706 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-23 20:19:24] 2026-03-23 20:18:18,706 | INFO     | **************************************
[2026-03-23 20:19:24] 2026-03-23 20:18:18,707 | INFO     | 
[2026-03-23 20:19:24] 2026-03-23 20:18:18,747 | INFO     | architecture information:
[2026-03-23 20:19:24] 2026-03-23 20:18:18,748 | INFO     | executing command: cat /etc/os-release
[2026-03-23 20:19:24] 2026-03-23 20:18:18,769 | INFO     | cat /etc/os-release:
[2026-03-23 20:19:24] NAME="CentOS Linux"
[2026-03-23 20:19:24] VERSION="7 (Core)"
[2026-03-23 20:19:24] ID="centos"
[2026-03-23 20:19:24] ID_LIKE="rhel fedora"
[2026-03-23 20:19:24] VERSION_ID="7"
[2026-03-23 20:19:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-23 20:19:24] ANSI_COLOR="0;31"
[2026-03-23 20:19:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-23 20:19:24] HOME_URL="https://www.centos.org/"
[2026-03-23 20:19:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-23 20:19:24] 
[2026-03-23 20:19:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-23 20:19:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-23 20:19:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-23 20:19:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-23 20:19:24] 
[2026-03-23 20:19:24] 2026-03-23 20:18:18,769 | INFO     | **************************************
[2026-03-23 20:19:24] 2026-03-23 20:18:19,272 | INFO     | executing command: df -mP /var/lib/boinc/slots/23
[2026-03-23 20:19:24] 2026-03-23 20:18:19,300 | INFO     | sufficient remaining disk space (1717005451264 B)
[2026-03-23 20:19:24] 2026-03-23 20:18:19,301 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-23 20:19:24] 2026-03-23 20:18:19,301 | INFO     | current server update state: UPDATING_FINAL
[2026-03-23 20:19:24] 2026-03-23 20:18:19,301 | INFO     | update_server=False
[2026-03-23 20:19:24] 2026-03-23 20:18:19,301 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-23 20:19:24] 2026-03-23 20:18:19,302 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-23 20:19:24] 2026-03-23 20:18:19,302 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-23 20:19:24] 2026-03-23 20:18:19,302 | INFO     | aborting loop
[2026-03-23 20:19:24] 2026-03-23 20:18:19,397 | INFO     | job.realtimelogging is not enabled
[2026-03-23 20:19:24] 2026-03-23 20:18:19,883 | INFO     | all payload control threads have been joined
[2026-03-23 20:19:24] 2026-03-23 20:18:20,306 | INFO     | [job] retrieve thread has finished
[2026-03-23 20:19:24] 2026-03-23 20:18:20,308 | INFO     | [job] job monitor thread has finished
[2026-03-23 20:19:24] 2026-03-23 20:18:20,310 | INFO     | [payload] failed_post thread has finished
[2026-03-23 20:19:24] 2026-03-23 20:18:20,385 | INFO     | all data control threads have been joined
[2026-03-23 20:19:24] 2026-03-23 20:18:20,403 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-23 20:19:24] 2026-03-23 20:18:20,646 | INFO     | [payload] execute_payloads thread has finished
[2026-03-23 20:19:24] 2026-03-23 20:18:20,760 | INFO     | [data] copytool_in thread has finished
[2026-03-23 20:19:24] 2026-03-23 20:18:20,888 | INFO     | [payload] control thread has finished
[2026-03-23 20:19:24] 2026-03-23 20:18:20,934 | INFO     | all job control threads have been joined
[2026-03-23 20:19:24] 2026-03-23 20:18:21,146 | INFO     | [job] validate thread has finished
[2026-03-23 20:19:24] 2026-03-23 20:18:21,166 | INFO     | [payload] validate_post thread has finished
[2026-03-23 20:19:24] 2026-03-23 20:18:21,308 | INFO     | [data] copytool_out thread has finished
[2026-03-23 20:19:24] 2026-03-23 20:18:21,390 | INFO     | [data] control thread has finished
[2026-03-23 20:19:24] 2026-03-23 20:18:21,485 | INFO     | [job] create_data_payload thread has finished
[2026-03-23 20:19:24] 2026-03-23 20:18:21,629 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-23 20:19:24] 2026-03-23 20:18:21,717 | INFO     | [payload] validate_pre thread has finished
[2026-03-23 20:19:24] 2026-03-23 20:18:21,940 | INFO     | [job] control thread has finished
[2026-03-23 20:19:24] 2026-03-23 20:18:22,454 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-23 20:19:24] 2026-03-23 20:18:22,634 | INFO     | [job] queue monitor thread has finished
[2026-03-23 20:19:24] 2026-03-23 20:18:26,460 | INFO     | [data] queue_monitor thread has finished
[2026-03-23 20:19:24] 2026-03-23 20:18:50,597 | INFO     | PID=4156529 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-23 20:19:24] 2026-03-23 20:18:50,598 | INFO     | .. there are 15 such processes running
[2026-03-23 20:19:24] 2026-03-23 20:18:50,599 | INFO     | found 0 job(s) in 20 queues
[2026-03-23 20:19:24] 2026-03-23 20:18:50,599 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-23 20:19:24] 2026-03-23 20:18:50,599 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-23 20:19:24] 2026-03-23 20:19:18,214 | INFO     | [monitor] cgroup control has ended
[2026-03-23 20:19:24] 2026-03-23 20:19:19,220 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140139694778176)>', '<ExcThread(monitor, started 140139112150784)>']
[2026-03-23 20:19:24] 2026-03-23 20:19:19,734 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-23 20:19:24] 2026-03-23 20:19:19,735 | INFO     | [monitor] control thread has ended
[2026-03-23 20:19:24] 2026-03-23 20:19:24,235 | INFO     | all workflow threads have been joined
[2026-03-23 20:19:24] 2026-03-23 20:19:24,235 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-23 20:19:24] 2026-03-23 20:19:24,236 | INFO     | traces error code: 0
[2026-03-23 20:19:24] 2026-03-23 20:19:24,237 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-23 20:19:24] 2026-03-23 20:19:24,461 [wrapper] ==== pilot stdout END ====
[2026-03-23 20:19:24] 2026-03-23 20:19:24,466 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-23 20:19:24] 2026-03-23 20:19:24,470 [wrapper] pilotpid: 4156529
[2026-03-23 20:19:24] 2026-03-23 20:19:24,473 [wrapper] Pilot exit status: 0
[2026-03-23 20:19:24] 2026-03-23 20:19:24,486 [wrapper] pandaids: 7063039335
[2026-03-23 20:19:24] 2026-03-23 20:19:24,660 [wrapper] cleanup supervisor_pilot  204055 4156530
[2026-03-23 20:19:24] 2026-03-23 20:19:24,664 [wrapper] Test setup, not cleaning
[2026-03-23 20:19:24] 2026-03-23 20:19:24,668 [wrapper] apfmon messages muted
[2026-03-23 20:19:24] 2026-03-23 20:19:24,672 [wrapper] ==== wrapper stdout END ====
[2026-03-23 20:19:24] 2026-03-23 20:19:24,675 [wrapper] ==== wrapper stderr END ====
[2026-03-23 20:19:24]  *** Error codes and diagnostics ***
[2026-03-23 20:19:24]     "exeErrorCode": 0,
[2026-03-23 20:19:24]     "exeErrorDiag": "",
[2026-03-23 20:19:24]     "pilotErrorCode": 0,
[2026-03-23 20:19:24]     "pilotErrorDiag": "",
[2026-03-23 20:19:24]  *** Listing of results directory ***
[2026-03-23 20:19:24] total 483504
[2026-03-23 20:19:24] -rw-r--r-- 1 boinc boinc    585013 Mar 23 08:14 pilot3.tar.gz
[2026-03-23 20:19:24] -rwx------ 1 boinc boinc     36322 Mar 23 08:17 runpilot2-wrapper.sh
[2026-03-23 20:19:24] -rw-r--r-- 1 boinc boinc      5111 Mar 23 08:21 queuedata.json
[2026-03-23 20:19:24] -rw-r--r-- 1 boinc boinc       100 Mar 23 18:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-23 20:19:24] -rwxr-xr-x 1 boinc boinc      7986 Mar 23 18:41 run_atlas
[2026-03-23 20:19:24] -rw-r--r-- 1 boinc boinc       105 Mar 23 18:41 job.xml
[2026-03-23 20:19:24] -rw-r--r-- 2 boinc boinc     15845 Mar 23 18:41 start_atlas.sh
[2026-03-23 20:19:24] drwxrwx--x 2 boinc boinc      4096 Mar 23 18:41 shared
[2026-03-23 20:19:24] -rw-r--r-- 2 boinc boinc    597540 Mar 23 18:41 input.tar.gz
[2026-03-23 20:19:24] -rw-r--r-- 2 boinc boinc 258371024 Mar 23 18:41 EVNT.49130597._000001.pool.root.1
[2026-03-23 20:19:24] -rw-r--r-- 1 boinc boinc         0 Mar 23 18:41 boinc_setup_complete
[2026-03-23 20:19:24] -rw-r--r-- 1 boinc boinc      9415 Mar 23 18:41 init_data.xml
[2026-03-23 20:19:24] -rw-r--r-- 1 boinc boinc         0 Mar 23 18:41 boinc_lockfile
[2026-03-23 20:19:24] -rw-r--r-- 1 boinc boinc      2599 Mar 23 18:41 pandaJob.out
[2026-03-23 20:19:24] -rw------- 1 boinc boinc   1010851 Mar 23 18:42 agis_schedconf.cvmfs.json
[2026-03-23 20:19:24] -rw------- 1 boinc boinc   1511579 Mar 23 18:42 agis_ddmendpoints.agis.ALL.json
[2026-03-23 20:19:24] -rw------- 1 boinc boinc       418 Mar 23 18:42 workernode_map.json
[2026-03-23 20:19:24] drwx------ 5 boinc boinc      4096 Mar 23 18:42 pilot3
[2026-03-23 20:19:24] -rw------- 1 boinc boinc 230347866 Mar 23 20:17 HITS.49273765._000060.pool.root.1
[2026-03-23 20:19:24] -rw-r--r-- 1 boinc boinc       529 Mar 23 20:17 boinc_task_state.xml
[2026-03-23 20:19:24] -rw------- 1 boinc boinc      1029 Mar 23 20:18 memory_monitor_summary.json
[2026-03-23 20:19:24] -rw------- 1 boinc boinc    405989 Mar 23 20:18 log.49273765._000060.job.log.tgz.1
[2026-03-23 20:19:24] -rw------- 1 boinc boinc      6272 Mar 23 20:18 heartbeat.json
[2026-03-23 20:19:24] -rw------- 1 boinc boinc        95 Mar 23 20:18 pilot_heartbeat.json
[2026-03-23 20:19:24] -rw-r--r-- 1 boinc boinc      8192 Mar 23 20:19 boinc_mmap_file
[2026-03-23 20:19:24] -rw-r--r-- 1 boinc boinc        27 Mar 23 20:19 wrapper_checkpoint.txt
[2026-03-23 20:19:24] -rw------- 1 boinc boinc      4895 Mar 23 20:19 pilotlog.txt
[2026-03-23 20:19:24] -rw------- 1 boinc boinc    812791 Mar 23 20:19 log.49273765._000060.job.log.1
[2026-03-23 20:19:24] -rw------- 1 boinc boinc       357 Mar 23 20:19 output.list
[2026-03-23 20:19:24] -rw-r--r-- 1 boinc boinc       620 Mar 23 20:19 runtime_log
[2026-03-23 20:19:24] -rw------- 1 boinc boinc   1239040 Mar 23 20:19 result.tar.gz
[2026-03-23 20:19:24] -rw------- 1 boinc boinc       643 Mar 23 20:19 VZmMDmTepO9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmBp9LDmSgbKIm.diag
[2026-03-23 20:19:24] -rw-r--r-- 1 boinc boinc      8787 Mar 23 20:19 runtime_log.err
[2026-03-23 20:19:24] -rw-r--r-- 1 boinc boinc     20869 Mar 23 20:19 stderr.txt
[2026-03-23 20:19:24] HITS file was successfully produced:
[2026-03-23 20:19:24] -rw------- 1 boinc boinc 230347866 Mar 23 20:17 shared/HITS.pool.root.1
[2026-03-23 20:19:24]  *** Contents of shared directory: ***
[2026-03-23 20:19:24] total 479088
[2026-03-23 20:19:24] -rw-r--r-- 2 boinc boinc     15845 Mar 23 18:41 start_atlas.sh
[2026-03-23 20:19:24] -rw-r--r-- 2 boinc boinc    597540 Mar 23 18:41 input.tar.gz
[2026-03-23 20:19:24] -rw-r--r-- 2 boinc boinc 258371024 Mar 23 18:41 ATLAS.root_0
[2026-03-23 20:19:24] -rw------- 1 boinc boinc 230347866 Mar 23 20:17 HITS.pool.root.1
[2026-03-23 20:19:24] -rw------- 1 boinc boinc   1239040 Mar 23 20:19 result.tar.gz
20:19:26 (4151797): run_atlas exited; CPU time 63821.704294
20:19:26 (4151797): called boinc_finish(0)

</stderr_txt>
]]>

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