Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:32:12 (3157347): wrapper (7.7.26015): starting
07:32:12 (3157347): wrapper: running run_atlas (--nthreads 3)
[2026-03-24 07:32:12] Arguments: --nthreads 3
[2026-03-24 07:32:12] Threads: 3
[2026-03-24 07:32:12] Checking for CVMFS
[2026-03-24 07:32:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-24 07:32:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-24 07:32:13] Running cvmfs_config stat atlas.cern.ch
[2026-03-24 07:32:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-24 07:32:13] 2.9.2.0 2975164 2249 68044 157634 3 49 23507454 36864000 0 130560 0 687913 99.978 72547 14924 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-24 07:32:13] CVMFS is ok
[2026-03-24 07:32:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-24 07:32:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-24 07:32:13] Further information can be found at the LHC@home message board.
[2026-03-24 07:32:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-24 07:32:13] Checking for apptainer binary...
[2026-03-24 07:32:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-24 07:32:13] Running /usr/bin/apptainer --version
[2026-03-24 07:32:13] apptainer version 1.4.1-1.1
[2026-03-24 07:32:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-24 07:32:14] thA335
[2026-03-24 07:32:14] apptainer works
[2026-03-24 07:32:14] Set ATHENA_PROC_NUMBER=3
[2026-03-24 07:32:14] Set ATHENA_CORE_NUMBER=3
[2026-03-24 07:32:14] Starting ATLAS job with PandaID=7055865761
[2026-03-24 07:32:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-24 07:36:39]  *** The last 200 lines of the pilot log: ***
[2026-03-24 07:36:39] 2026-03-24 06:35:52,566 | INFO     | will attempt to kill all subprocesses of pid=3165830
[2026-03-24 07:36:39] 2026-03-24 06:35:52,610 | INFO     | process IDs to be killed: [3165830] (in reverse order)
[2026-03-24 07:36:39] 2026-03-24 06:35:52,639 | WARNING  | found no corresponding commands to process id(s)
[2026-03-24 07:36:39] 2026-03-24 06:35:52,639 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-24 07:36:39] 2026-03-24 06:35:52,640 | INFO     | did not find any defunct processes belonging to 3165830
[2026-03-24 07:36:39] 2026-03-24 06:35:52,641 | INFO     | did not find any defunct processes belonging to 3165830
[2026-03-24 07:36:39] 2026-03-24 06:35:52,641 | INFO     | ready for new job
[2026-03-24 07:36:39] 2026-03-24 06:35:52,641 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-24 07:36:39] 2026-03-24 06:35:52,642 | INFO     | **************************************
[2026-03-24 07:36:39] 2026-03-24 06:35:52,642 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-24 07:36:39] 2026-03-24 06:35:52,642 | INFO     | **************************************
[2026-03-24 07:36:39] 2026-03-24 06:35:52,642 | INFO     | 
[2026-03-24 07:36:39] 2026-03-24 06:35:52,642 | INFO     | architecture information:
[2026-03-24 07:36:39] 2026-03-24 06:35:52,643 | INFO     | executing command: cat /etc/os-release
[2026-03-24 07:36:39] 2026-03-24 06:35:52,653 | INFO     | cat /etc/os-release:
[2026-03-24 07:36:39] NAME="CentOS Linux"
[2026-03-24 07:36:39] VERSION="7 (Core)"
[2026-03-24 07:36:39] ID="centos"
[2026-03-24 07:36:39] ID_LIKE="rhel fedora"
[2026-03-24 07:36:39] VERSION_ID="7"
[2026-03-24 07:36:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-24 07:36:39] ANSI_COLOR="0;31"
[2026-03-24 07:36:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-24 07:36:39] HOME_URL="https://www.centos.org/"
[2026-03-24 07:36:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-24 07:36:39] 
[2026-03-24 07:36:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-24 07:36:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-24 07:36:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-24 07:36:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-24 07:36:39] 
[2026-03-24 07:36:39] 2026-03-24 06:35:52,654 | INFO     | **************************************
[2026-03-24 07:36:39] 2026-03-24 06:35:53,157 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-24 07:36:39] 2026-03-24 06:35:53,171 | INFO     | sufficient remaining disk space (837858361344 B)
[2026-03-24 07:36:39] 2026-03-24 06:35:53,171 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-24 07:36:39] 2026-03-24 06:35:53,171 | INFO     | current server update state: UPDATING_FINAL
[2026-03-24 07:36:39] 2026-03-24 06:35:53,171 | INFO     | update_server=False
[2026-03-24 07:36:39] 2026-03-24 06:35:53,171 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-24 07:36:39] 2026-03-24 06:35:53,171 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-24 07:36:39] 2026-03-24 06:35:53,171 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-24 07:36:39] 2026-03-24 06:35:53,517 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-24 07:36:39] 2026-03-24 06:35:53,518 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-24 07:36:39] 2026-03-24 06:35:53,518 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-24 07:36:39] 2026-03-24 06:35:53,518 | INFO     | will abort loop
[2026-03-24 07:36:39] 2026-03-24 06:35:53,701 | INFO     | all data control threads have been joined
[2026-03-24 07:36:39] 2026-03-24 06:35:54,177 | INFO     | [job] retrieve thread has finished
[2026-03-24 07:36:39] 2026-03-24 06:35:54,178 | INFO     | [job] queue monitor thread has finished
[2026-03-24 07:36:39] 2026-03-24 06:35:54,194 | INFO     | [data] copytool_in thread has finished
[2026-03-24 07:36:39] 2026-03-24 06:35:54,196 | INFO     | all job control threads have been joined
[2026-03-24 07:36:39] 2026-03-24 06:35:54,524 | INFO     | [job] job monitor thread has finished
[2026-03-24 07:36:39] 2026-03-24 06:35:54,527 | INFO     | all payload control threads have been joined
[2026-03-24 07:36:39] 2026-03-24 06:35:54,635 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-24 07:36:39] 2026-03-24 06:35:54,707 | INFO     | [data] control thread has finished
[2026-03-24 07:36:39] 2026-03-24 06:35:54,822 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-24 07:36:39] 2026-03-24 06:35:55,001 | INFO     | [payload] execute_payloads thread has finished
[2026-03-24 07:36:39] 2026-03-24 06:35:55,076 | INFO     | [payload] failed_post thread has finished
[2026-03-24 07:36:39] 2026-03-24 06:35:55,178 | INFO     | [data] copytool_out thread has finished
[2026-03-24 07:36:39] 2026-03-24 06:35:55,202 | INFO     | [job] control thread has finished
[2026-03-24 07:36:39] 2026-03-24 06:35:55,485 | INFO     | [job] validate thread has finished
[2026-03-24 07:36:39] 2026-03-24 06:35:55,494 | INFO     | [payload] validate_post thread has finished
[2026-03-24 07:36:39] 2026-03-24 06:35:55,533 | INFO     | [payload] control thread has finished
[2026-03-24 07:36:39] 2026-03-24 06:35:55,550 | INFO     | [job] create_data_payload thread has finished
[2026-03-24 07:36:39] 2026-03-24 06:35:55,605 | INFO     | [payload] validate_pre thread has finished
[2026-03-24 07:36:39] 2026-03-24 06:35:58,642 | INFO     | [data] queue_monitor thread has finished
[2026-03-24 07:36:39] 2026-03-24 06:36:23,679 | INFO     | PID=3161398 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-24 07:36:39] 2026-03-24 06:36:23,679 | INFO     | found 0 job(s) in 20 queues
[2026-03-24 07:36:39] 2026-03-24 06:36:23,679 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-24 07:36:39] 2026-03-24 06:36:23,679 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-24 07:36:39] 2026-03-24 06:36:32,577 | INFO     | [monitor] cgroup control has ended
[2026-03-24 07:36:39] 2026-03-24 06:36:34,617 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140422426277696)>', '<ExcThread(monitor, started 140421674039040)>']
[2026-03-24 07:36:39] 2026-03-24 06:36:34,737 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-24 07:36:39] 2026-03-24 06:36:34,737 | INFO     | [monitor] control thread has ended
[2026-03-24 07:36:39] 2026-03-24 06:36:39,643 | INFO     | all workflow threads have been joined
[2026-03-24 07:36:39] 2026-03-24 06:36:39,643 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-24 07:36:39] 2026-03-24 06:36:39,644 | INFO     | traces error code: 0
[2026-03-24 07:36:39] 2026-03-24 06:36:39,644 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-24 07:36:39] 2026-03-24 06:36:39,689 [wrapper] ==== pilot stdout END ====
[2026-03-24 07:36:39] 2026-03-24 06:36:39,693 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-24 07:36:39] 2026-03-24 06:36:39,696 [wrapper] pilotpid: 3161398
[2026-03-24 07:36:39] 2026-03-24 06:36:39,699 [wrapper] Pilot exit status: 0
[2026-03-24 07:36:39] 2026-03-24 06:36:39,707 [wrapper] pandaids: 7055865761
[2026-03-24 07:36:39] 2026-03-24 06:36:39,724 [wrapper] cleanup supervisor_pilot 3161404 3161399
[2026-03-24 07:36:39] 2026-03-24 06:36:39,726 [wrapper] Test setup, not cleaning
[2026-03-24 07:36:39] 2026-03-24 06:36:39,729 [wrapper] apfmon messages muted
[2026-03-24 07:36:39] 2026-03-24 06:36:39,731 [wrapper] ==== wrapper stdout END ====
[2026-03-24 07:36:39] 2026-03-24 06:36:39,733 [wrapper] ==== wrapper stderr END ====
[2026-03-24 07:36:39]  *** Error codes and diagnostics ***
[2026-03-24 07:36:39]     "exeErrorCode": 65,
[2026-03-24 07:36:39]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2026-03-24 07:36:39]     "pilotErrorCode": 1305,
[2026-03-24 07:36:39]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2026-03-24 07:36:39]  *** Listing of results directory ***
[2026-03-24 07:36:39] total 337524
[2026-03-24 07:36:39] -rw-r--r-- 1 boinc boinc    585013 Mar 15 14:09 pilot3.tar.gz
[2026-03-24 07:36:39] -rw-r--r-- 1 boinc boinc      5111 Mar 15 14:16 queuedata.json
[2026-03-24 07:36:39] -rwx------ 1 boinc boinc     36322 Mar 15 14:17 runpilot2-wrapper.sh
[2026-03-24 07:36:39] -rw-r--r-- 1 boinc boinc       100 Mar 24 07:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-24 07:36:39] -rwxr-xr-x 1 boinc boinc      7986 Mar 24 07:32 run_atlas
[2026-03-24 07:36:39] -rw-r--r-- 1 boinc boinc       105 Mar 24 07:32 job.xml
[2026-03-24 07:36:39] -rw-r--r-- 2 boinc boinc 341388821 Mar 24 07:32 EVNT.49148775._000001.pool.root.1
[2026-03-24 07:36:39] -rw-r--r-- 2 boinc boinc    597720 Mar 24 07:32 input.tar.gz
[2026-03-24 07:36:39] -rw-r--r-- 2 boinc boinc     15845 Mar 24 07:32 start_atlas.sh
[2026-03-24 07:36:39] drwxrwx--x 2 boinc boinc      4096 Mar 24 07:32 shared
[2026-03-24 07:36:39] -rw-r--r-- 1 boinc boinc         0 Mar 24 07:32 boinc_setup_complete
[2026-03-24 07:36:39] -rw-r--r-- 1 boinc boinc      6195 Mar 24 07:32 init_data.xml
[2026-03-24 07:36:39] -rw-r--r-- 1 boinc boinc         0 Mar 24 07:32 boinc_lockfile
[2026-03-24 07:36:39] -rw-r--r-- 1 boinc boinc      2946 Mar 24 07:32 pandaJob.out
[2026-03-24 07:36:39] -rw------- 1 boinc boinc   1010893 Mar 24 07:32 agis_schedconf.cvmfs.json
[2026-03-24 07:36:39] -rw------- 1 boinc boinc   1511579 Mar 24 07:32 agis_ddmendpoints.agis.ALL.json
[2026-03-24 07:36:39] -rw------- 1 boinc boinc       416 Mar 24 07:32 workernode_map.json
[2026-03-24 07:36:39] drwx------ 5 boinc boinc      4096 Mar 24 07:32 pilot3
[2026-03-24 07:36:39] -rw-r--r-- 1 boinc boinc       523 Mar 24 07:33 boinc_task_state.xml
[2026-03-24 07:36:39] -rw------- 1 boinc boinc       964 Mar 24 07:33 memory_monitor_summary.json
[2026-03-24 07:36:39] -rw------- 1 boinc boinc     63418 Mar 24 07:33 log.49148787._000004.job.log.tgz.1
[2026-03-24 07:36:39] -rw------- 1 boinc boinc        95 Mar 24 07:35 pilot_heartbeat.json
[2026-03-24 07:36:39] -rw------- 1 boinc boinc      7251 Mar 24 07:35 heartbeat.json
[2026-03-24 07:36:39] -rw-r--r-- 1 boinc boinc      8192 Mar 24 07:36 boinc_mmap_file
[2026-03-24 07:36:39] -rw-r--r-- 1 boinc boinc        23 Mar 24 07:36 wrapper_checkpoint.txt
[2026-03-24 07:36:39] -rw------- 1 boinc boinc      4934 Mar 24 07:36 pilotlog.txt
[2026-03-24 07:36:39] -rw------- 1 boinc boinc     90431 Mar 24 07:36 log.49148787._000004.job.log.1
[2026-03-24 07:36:39] -rw------- 1 boinc boinc       186 Mar 24 07:36 output.list
[2026-03-24 07:36:39] -rw-r--r-- 1 boinc boinc       620 Mar 24 07:36 runtime_log
[2026-03-24 07:36:39] -rw------- 1 boinc boinc    174080 Mar 24 07:36 result.tar.gz
[2026-03-24 07:36:39] -rw-r--r-- 1 boinc boinc      8743 Mar 24 07:36 runtime_log.err
[2026-03-24 07:36:39] -rw------- 1 boinc boinc       648 Mar 24 07:36 8abLDmTW0L9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm9AvLDmEDxfVo.diag
[2026-03-24 07:36:39] -rw-r--r-- 1 boinc boinc     10797 Mar 24 07:36 stderr.txt
[2026-03-24 07:36:39] No HITS result produced
[2026-03-24 07:36:39]  *** Contents of shared directory: ***
[2026-03-24 07:36:39] total 334164
[2026-03-24 07:36:39] -rw-r--r-- 2 boinc boinc 341388821 Mar 24 07:32 ATLAS.root_0
[2026-03-24 07:36:39] -rw-r--r-- 2 boinc boinc    597720 Mar 24 07:32 input.tar.gz
[2026-03-24 07:36:39] -rw-r--r-- 2 boinc boinc     15845 Mar 24 07:32 start_atlas.sh
[2026-03-24 07:36:39] -rw------- 1 boinc boinc    174080 Mar 24 07:36 result.tar.gz
07:36:41 (3157347): run_atlas exited; CPU time 28.172139
07:36:41 (3157347): called boinc_finish(0)

</stderr_txt>
]]>

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