Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:49:27 (3531453): wrapper (7.7.26015): starting
14:49:27 (3531453): wrapper: running run_atlas (--nthreads 12)
[2026-03-24 14:49:27] Arguments: --nthreads 12
[2026-03-24 14:49:27] Threads: 12
[2026-03-24 14:49:27] Checking for CVMFS
[2026-03-24 14:49:27] No cvmfs_config command found, will try listing directly
[2026-03-24 14:49:27] CVMFS is ok
[2026-03-24 14:49:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-24 14:49:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-24 14:49:27] Further information can be found at the LHC@home message board.
[2026-03-24 14:49:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-24 14:49:27] Checking for apptainer binary...
[2026-03-24 14:49:27] which: no apptainer in ((null))
[2026-03-24 14:49:27] apptainer is not installed, using version from CVMFS
[2026-03-24 14:49:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-24 14:49:27] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot180/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut22.grid.cesnet.cz
[2026-03-24 14:49:27] apptainer works
[2026-03-24 14:49:27] Set ATHENA_PROC_NUMBER=12
[2026-03-24 14:49:27] Set ATHENA_CORE_NUMBER=12
[2026-03-24 14:49:27] Starting ATLAS job with PandaID=7063196632
[2026-03-24 14:49:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot180/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-24 15:54:14]  *** The last 200 lines of the pilot log: ***
[2026-03-24 15:54:14]  lfn=log.49176553._000583.job.log.tgz.1
[2026-03-24 15:54:14]  mtime=0
[2026-03-24 15:54:14]  protocol_id=None
[2026-03-24 15:54:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-24 15:54:14]  replicas=None
[2026-03-24 15:54:14]  scope=mc23_13p6TeV
[2026-03-24 15:54:14]  status=None
[2026-03-24 15:54:14]  status_code=0
[2026-03-24 15:54:14]  storage_token=
[2026-03-24 15:54:14]  surl=/var/lib/boinc/var/slot180/slots/1/PanDA_Pilot-7063196632/log.49176553._000583.job.log.tgz.1
[2026-03-24 15:54:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/85/dd/log.49176553._000583.job.log.tgz.1
[2026-03-24 15:54:14]  workdir=None
[2026-03-24 15:54:14] ]
[2026-03-24 15:54:14] 2026-03-24 14:53:38,053 | INFO     | transferring file log.49176553._000583.job.log.tgz.1 from /var/lib/boinc/var/slot180/slots/1/PanDA_Pilot-7063196632/log.49176553._000583.job.log.tgz.1 to /var/lib/
[2026-03-24 15:54:14] 2026-03-24 14:53:38,053 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot180/slots/1/PanDA_Pilot-7063196632/log.49176553._000583.job.log.tgz.1 /var/lib/boinc/var/slot180/slots/1/
[2026-03-24 15:54:14] 2026-03-24 14:53:38,071 | INFO     | adding to output.list: log.49176553._000583.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/85/dd/log.49176553._000583.job.log.tg
[2026-03-24 15:54:14] 2026-03-24 14:53:38,072 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-24 15:54:14] 2026-03-24 14:53:38,072 | INFO     | summary of transferred files:
[2026-03-24 15:54:14] 2026-03-24 14:53:38,072 | INFO     |  -- lfn=log.49176553._000583.job.log.tgz.1, status_code=0, status=transferred
[2026-03-24 15:54:14] 2026-03-24 14:53:38,072 | INFO     | stage-out finished correctly
[2026-03-24 15:54:14] 2026-03-24 14:53:39,489 | INFO     | PID=3535989 has CPU usage=8.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-24 15:54:14] 2026-03-24 14:53:39,489 | INFO     | .. there are 15 such processes running
[2026-03-24 15:54:14] 2026-03-24 14:53:40,228 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-24 15:54:14] 2026-03-24 14:53:40,490 | INFO     | time since job start (3840s) is within the limit (345600.0s)
[2026-03-24 15:54:14] 2026-03-24 14:53:40,960 | INFO     | job 7063196632 has state=finished
[2026-03-24 15:54:14] 2026-03-24 14:53:40,960 | INFO     | preparing for final server update for job 7063196632 in state='finished'
[2026-03-24 15:54:14] 2026-03-24 14:53:40,960 | INFO     | reading metadata from: /var/lib/boinc/var/slot180/slots/1/PanDA_Pilot-7063196632/jobReport.json
[2026-03-24 15:54:14] 2026-03-24 14:53:40,962 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot180/slots/1/workernode_map.json
[2026-03-24 15:54:14] 2026-03-24 14:53:40,962 | INFO     | this job has now completed (state=finished)
[2026-03-24 15:54:14] 2026-03-24 14:53:40,962 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-24 15:54:14] 2026-03-24 14:53:40,962 | INFO     | log transfer has been attempted: DONE
[2026-03-24 15:54:14] 2026-03-24 14:53:40,962 | INFO     | job 7063196632 has finished - writing final server update
[2026-03-24 15:54:14] 2026-03-24 14:53:40,963 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_4156403/.job.ad'
[2026-03-24 15:54:14] 2026-03-24 14:53:40,963 | INFO     | total number of processed events: 400 (read)
[2026-03-24 15:54:14] 2026-03-24 14:53:40,982 | INFO     | using path: /var/lib/boinc/var/slot180/slots/1/PanDA_Pilot-7063196632/memory_monitor_summary.json (trf name=prmon)
[2026-03-24 15:54:14] 2026-03-24 14:53:40,983 | INFO     | extracted standard info from prmon json
[2026-03-24 15:54:14] 2026-03-24 14:53:40,983 | INFO     | extracted standard memory fields from prmon json
[2026-03-24 15:54:14] 2026-03-24 14:53:40,983 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-24 15:54:14] 2026-03-24 14:53:40,983 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-24 15:54:14] 2026-03-24 14:53:40,983 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-24 15:54:14] 2026-03-24 14:53:40,984 | INFO     | fitting pss+swap vs Time
[2026-03-24 15:54:14] 2026-03-24 14:53:40,984 | INFO     | sum of square deviations: 54438230.0
[2026-03-24 15:54:14] 2026-03-24 14:53:40,985 | INFO     | sum of deviations: -416293889.99999994
[2026-03-24 15:54:14] 2026-03-24 14:53:40,985 | INFO     | mean x: 1774362184.5
[2026-03-24 15:54:14] 2026-03-24 14:53:40,985 | INFO     | mean y: 2721234.035714286
[2026-03-24 15:54:14] 2026-03-24 14:53:40,985 | INFO     | intersect: 13571423523.849373
[2026-03-24 15:54:14] 2026-03-24 14:53:40,985 | INFO     | chi2: 0.0010174867363557934
[2026-03-24 15:54:14] 2026-03-24 14:53:40,985 | INFO     | current memory leak: -7.65 B/s (using 56 data points, chi2=0.00)
[2026-03-24 15:54:14] 2026-03-24 14:53:40,985 | INFO     | could have reported an average CPU frequency of 3606 MHz (6 samples)
[2026-03-24 15:54:14] 2026-03-24 14:53:40,985 | INFO     | ..............................
[2026-03-24 15:54:14] 2026-03-24 14:53:40,985 | INFO     | . Timing measurements:
[2026-03-24 15:54:14] 2026-03-24 14:53:40,985 | INFO     | . get job = 0 s
[2026-03-24 15:54:14] 2026-03-24 14:53:40,985 | INFO     | . initial setup = 4 s
[2026-03-24 15:54:14] 2026-03-24 14:53:40,985 | INFO     | . payload setup = 6 s
[2026-03-24 15:54:14] 2026-03-24 14:53:40,985 | INFO     | . stage-in = 0 s
[2026-03-24 15:54:14] 2026-03-24 14:53:40,985 | INFO     | . payload execution = 3816 s
[2026-03-24 15:54:14] 2026-03-24 14:53:40,985 | INFO     | . stage-out = 0 s
[2026-03-24 15:54:14] 2026-03-24 14:53:40,985 | INFO     | . log creation = 0 s
[2026-03-24 15:54:14] 2026-03-24 14:53:40,985 | INFO     | ..............................
[2026-03-24 15:54:14] 2026-03-24 14:53:41,035 | INFO     | 
[2026-03-24 15:54:14] 2026-03-24 14:53:41,035 | INFO     | job summary report
[2026-03-24 15:54:14] 2026-03-24 14:53:41,035 | INFO     | --------------------------------------------------
[2026-03-24 15:54:14] 2026-03-24 14:53:41,035 | INFO     | PanDA job id: 7063196632
[2026-03-24 15:54:14] 2026-03-24 14:53:41,035 | INFO     | task id: 49176553
[2026-03-24 15:54:14] 2026-03-24 14:53:41,035 | INFO     | errors: (none)
[2026-03-24 15:54:14] 2026-03-24 14:53:41,035 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-24 15:54:14] 2026-03-24 14:53:41,035 | INFO     | pilot state: finished 
[2026-03-24 15:54:14] 2026-03-24 14:53:41,035 | INFO     | transexitcode: 0
[2026-03-24 15:54:14] 2026-03-24 14:53:41,035 | INFO     | exeerrorcode: 0
[2026-03-24 15:54:14] 2026-03-24 14:53:41,035 | INFO     | exeerrordiag: 
[2026-03-24 15:54:14] 2026-03-24 14:53:41,035 | INFO     | exitcode: 0
[2026-03-24 15:54:14] 2026-03-24 14:53:41,035 | INFO     | exitmsg: OK
[2026-03-24 15:54:14] 2026-03-24 14:53:41,035 | INFO     | cpuconsumptiontime: 42932 s
[2026-03-24 15:54:14] 2026-03-24 14:53:41,035 | INFO     | nevents: 400
[2026-03-24 15:54:14] 2026-03-24 14:53:41,035 | INFO     | neventsw: 0
[2026-03-24 15:54:14] 2026-03-24 14:53:41,035 | INFO     | pid: 3541781
[2026-03-24 15:54:14] 2026-03-24 14:53:41,035 | INFO     | pgrp: 3541781
[2026-03-24 15:54:14] 2026-03-24 14:53:41,035 | INFO     | corecount: 12
[2026-03-24 15:54:14] 2026-03-24 14:53:41,035 | INFO     | event service: False
[2026-03-24 15:54:14] 2026-03-24 14:53:41,035 | INFO     | sizes: {0: 2280319, 11: 2280319, 3826: 2306199, 3827: 2315221, 3829: 2315277, 3830: 2315471}
[2026-03-24 15:54:14] 2026-03-24 14:53:41,036 | INFO     | --------------------------------------------------
[2026-03-24 15:54:14] 2026-03-24 14:53:41,036 | INFO     | 
[2026-03-24 15:54:14] 2026-03-24 14:53:41,036 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot180/slots/1
[2026-03-24 15:54:14] 2026-03-24 14:53:41,053 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-24 15:54:14] 2026-03-24 14:53:41,053 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-24 15:54:14] 2026-03-24 14:53:41,053 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-24 15:54:14] 2026-03-24 14:53:41,053 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-24 15:54:14] 2026-03-24 14:53:41,053 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-24 15:54:14] 2026-03-24 14:53:41,053 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-24 15:54:14] 2026-03-24 14:53:41,053 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-24 15:54:14] 2026-03-24 14:53:41,053 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-24 15:54:14] 2026-03-24 14:53:41,053 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-24 15:54:14] 2026-03-24 14:53:41,053 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-24 15:54:14] 2026-03-24 14:53:41,053 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-24 15:54:14] 2026-03-24 14:53:41,053 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-24 15:54:14] 2026-03-24 14:53:41,053 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-24 15:54:14] 2026-03-24 14:53:41,053 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-24 15:54:14] 2026-03-24 14:53:41,053 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-24 15:54:14] 2026-03-24 14:53:41,053 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-24 15:54:14] 2026-03-24 14:53:41,054 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-24 15:54:14] 2026-03-24 14:53:41,054 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-24 15:54:14] 2026-03-24 14:53:41,054 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-24 15:54:14] 2026-03-24 14:53:41,054 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-24 15:54:14] 2026-03-24 14:53:41,054 | INFO     | job 7063196632 has completed (purged errors)
[2026-03-24 15:54:14] 2026-03-24 14:53:41,054 | INFO     | overall cleanup function is called
[2026-03-24 15:54:14] 2026-03-24 14:53:42,061 | INFO     | --- collectZombieJob: --- 10, [3541781]
[2026-03-24 15:54:14] 2026-03-24 14:53:42,061 | INFO     | zombie collector waiting for pid 3541781
[2026-03-24 15:54:14] 2026-03-24 14:53:42,061 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-24 15:54:14] 2026-03-24 14:53:42,061 | INFO     | collected zombie processes
[2026-03-24 15:54:14] 2026-03-24 14:53:42,061 | INFO     | will attempt to kill all subprocesses of pid=3541781
[2026-03-24 15:54:14] 2026-03-24 14:53:43,245 | WARNING  | process 3541781 can no longer be monitored (due to stat problems) - aborting
[2026-03-24 15:54:14] 2026-03-24 14:53:43,356 | INFO     | process IDs to be killed: [3541781] (in reverse order)
[2026-03-24 15:54:14] 2026-03-24 14:53:43,516 | WARNING  | found no corresponding commands to process id(s)
[2026-03-24 15:54:14] 2026-03-24 14:53:43,516 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-24 15:54:14] 2026-03-24 14:53:43,573 | INFO     | did not find any defunct processes belonging to 3541781
[2026-03-24 15:54:14] 2026-03-24 14:53:43,646 | INFO     | did not find any defunct processes belonging to 3541781
[2026-03-24 15:54:14] 2026-03-24 14:53:43,647 | INFO     | ready for new job
[2026-03-24 15:54:14] 2026-03-24 14:53:43,647 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-24 15:54:14] 2026-03-24 14:53:43,648 | INFO     | **************************************
[2026-03-24 15:54:14] 2026-03-24 14:53:43,648 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-24 15:54:14] 2026-03-24 14:53:43,648 | INFO     | **************************************
[2026-03-24 15:54:14] 2026-03-24 14:53:43,648 | INFO     | 
[2026-03-24 15:54:14] 2026-03-24 14:53:43,660 | INFO     | architecture information:
[2026-03-24 15:54:14] 2026-03-24 14:53:43,660 | INFO     | executing command: cat /etc/os-release
[2026-03-24 15:54:14] 2026-03-24 14:53:43,674 | INFO     | cat /etc/os-release:
[2026-03-24 15:54:14] NAME="CentOS Linux"
[2026-03-24 15:54:14] VERSION="7 (Core)"
[2026-03-24 15:54:14] ID="centos"
[2026-03-24 15:54:14] ID_LIKE="rhel fedora"
[2026-03-24 15:54:14] VERSION_ID="7"
[2026-03-24 15:54:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-24 15:54:14] ANSI_COLOR="0;31"
[2026-03-24 15:54:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-24 15:54:14] HOME_URL="https://www.centos.org/"
[2026-03-24 15:54:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-24 15:54:14] 
[2026-03-24 15:54:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-24 15:54:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-24 15:54:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-24 15:54:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-24 15:54:14] 
[2026-03-24 15:54:14] 2026-03-24 14:53:43,675 | INFO     | **************************************
[2026-03-24 15:54:14] 2026-03-24 14:53:43,719 | INFO     | using path: /var/lib/boinc/var/slot180/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-03-24 15:54:14] 2026-03-24 14:53:44,090 | INFO     | number of running child processes to parent process 3541781: 1
[2026-03-24 15:54:14] 2026-03-24 14:53:44,091 | INFO     | maximum number of monitored processes: 6
[2026-03-24 15:54:14] 2026-03-24 14:53:44,091 | INFO     | aborting job monitoring since job object (job id=7063196632) has expired
[2026-03-24 15:54:14] 2026-03-24 14:53:44,178 | INFO     | executing command: df -mP /var/lib/boinc/var/slot180/slots/1
[2026-03-24 15:54:14] 2026-03-24 14:53:44,192 | INFO     | sufficient remaining disk space (19327352832 B)
[2026-03-24 15:54:14] 2026-03-24 14:53:44,192 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-24 15:54:14] 2026-03-24 14:53:44,192 | INFO     | current server update state: UPDATING_FINAL
[2026-03-24 15:54:14] 2026-03-24 14:53:44,192 | INFO     | update_server=False
[2026-03-24 15:54:14] 2026-03-24 14:53:44,192 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-24 15:54:14] 2026-03-24 14:53:44,193 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-24 15:54:14] 2026-03-24 14:53:44,193 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-24 15:54:14] 2026-03-24 14:53:44,193 | INFO     | will abort loop
[2026-03-24 15:54:14] 2026-03-24 14:53:44,695 | INFO     | all payload control threads have been joined
[2026-03-24 15:54:14] 2026-03-24 14:53:45,097 | INFO     | all data control threads have been joined
[2026-03-24 15:54:14] 2026-03-24 14:53:45,198 | INFO     | [job] retrieve thread has finished
[2026-03-24 15:54:14] 2026-03-24 14:53:45,199 | INFO     | [job] job monitor thread has finished
[2026-03-24 15:54:14] 2026-03-24 14:53:45,297 | INFO     | all job control threads have been joined
[2026-03-24 15:54:14] 2026-03-24 14:53:45,700 | INFO     | [payload] control thread has finished
[2026-03-24 15:54:14] 2026-03-24 14:53:45,865 | INFO     | [monitor] cgroup control has ended
[2026-03-24 15:54:14] 2026-03-24 14:53:45,982 | INFO     | [payload] execute_payloads thread has finished
[2026-03-24 15:54:14] 2026-03-24 14:53:46,013 | INFO     | [job] validate thread has finished
[2026-03-24 15:54:14] 2026-03-24 14:53:46,041 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-24 15:54:14] 2026-03-24 14:53:46,102 | INFO     | [data] control thread has finished
[2026-03-24 15:54:14] 2026-03-24 14:53:46,144 | INFO     | [job] create_data_payload thread has finished
[2026-03-24 15:54:14] 2026-03-24 14:53:46,199 | INFO     | [data] copytool_out thread has finished
[2026-03-24 15:54:14] 2026-03-24 14:53:46,200 | INFO     | [payload] validate_pre thread has finished
[2026-03-24 15:54:14] 2026-03-24 14:53:46,284 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-24 15:54:14] 2026-03-24 14:53:46,303 | INFO     | [job] control thread has finished
[2026-03-24 15:54:14] 2026-03-24 14:53:46,486 | INFO     | [data] copytool_in thread has finished
[2026-03-24 15:54:14] 2026-03-24 14:53:46,552 | INFO     | [payload] validate_post thread has finished
[2026-03-24 15:54:14] 2026-03-24 14:53:46,752 | INFO     | [payload] failed_post thread has finished
[2026-03-24 15:54:14] 2026-03-24 14:53:47,046 | INFO     | [job] queue monitor thread has finished
[2026-03-24 15:54:14] 2026-03-24 14:53:50,289 | INFO     | [data] queue_monitor thread has finished
[2026-03-24 15:54:14] 2026-03-24 14:53:54,543 | INFO     | job.realtimelogging is not enabled
[2026-03-24 15:54:14] 2026-03-24 14:53:55,548 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-24 15:54:14] 2026-03-24 14:53:57,449 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23018507503424)>', '<ExcThread(monitor, started 23018191423232)>']
[2026-03-24 15:54:14] 2026-03-24 14:54:02,454 | INFO     | all workflow threads have been joined
[2026-03-24 15:54:14] 2026-03-24 14:54:02,455 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-24 15:54:14] 2026-03-24 14:54:02,455 | INFO     | traces error code: 0
[2026-03-24 15:54:14] 2026-03-24 14:54:02,455 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-24 15:54:14] 2026-03-24 14:54:14,036 | INFO     | PID=3535989 has CPU usage=9.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-24 15:54:14] 2026-03-24 14:54:14,037 | INFO     | .. there are 15 such processes running
[2026-03-24 15:54:14] 2026-03-24 14:54:14,037 | INFO     | found 0 job(s) in 20 queues
[2026-03-24 15:54:14] 2026-03-24 14:54:14,038 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-24 15:54:14] 2026-03-24 14:54:14,038 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-24 15:54:14] 2026-03-24 14:54:14,038 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-24 15:54:14] 2026-03-24 14:54:14,038 | INFO     | [monitor] control thread has ended
[2026-03-24 15:54:14] 2026-03-24 14:54:14,205 [wrapper] ==== pilot stdout END ====
[2026-03-24 15:54:14] 2026-03-24 14:54:14,208 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-24 15:54:14] 2026-03-24 14:54:14,211 [wrapper] pilotpid: 3535989
[2026-03-24 15:54:14] 2026-03-24 14:54:14,213 [wrapper] Pilot exit status: 0
[2026-03-24 15:54:14] 2026-03-24 14:54:14,223 [wrapper] pandaids: 7063196632
[2026-03-24 15:54:14] 2026-03-24 14:54:14,337 [wrapper] cleanup supervisor_pilot 3786642 3535990
[2026-03-24 15:54:14] 2026-03-24 14:54:14,340 [wrapper] Test setup, not cleaning
[2026-03-24 15:54:14] 2026-03-24 14:54:14,342 [wrapper] apfmon messages muted
[2026-03-24 15:54:14] 2026-03-24 14:54:14,344 [wrapper] ==== wrapper stdout END ====
[2026-03-24 15:54:14] 2026-03-24 14:54:14,345 [wrapper] ==== wrapper stderr END ====
[2026-03-24 15:54:14]  *** Error codes and diagnostics ***
[2026-03-24 15:54:14]     "exeErrorCode": 0,
[2026-03-24 15:54:14]     "exeErrorDiag": "",
[2026-03-24 15:54:14]     "pilotErrorCode": 0,
[2026-03-24 15:54:14]     "pilotErrorDiag": "",
[2026-03-24 15:54:14]  *** Listing of results directory ***
[2026-03-24 15:54:14] total 473640
[2026-03-24 15:54:14] -rw-r--r--. 1 boinc boinc      5111 Mar 23 12:36 queuedata.json
[2026-03-24 15:54:14] -rw-r--r--. 1 boinc boinc    585013 Mar 23 12:36 pilot3.tar.gz
[2026-03-24 15:54:14] -rwx------. 1 boinc boinc     36322 Mar 23 12:37 runpilot2-wrapper.sh
[2026-03-24 15:54:14] -rw-r--r--. 1 boinc boinc       100 Mar 24 14:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-24 15:54:14] -rwxr-xr-x. 1 boinc boinc      7986 Mar 24 14:49 run_atlas
[2026-03-24 15:54:14] -rw-r--r--. 1 boinc boinc       105 Mar 24 14:49 job.xml
[2026-03-24 15:54:14] -rw-r--r--. 1 boinc boinc      6711 Mar 24 14:49 init_data.xml
[2026-03-24 15:54:14] -rw-r--r--. 2 boinc boinc 240965076 Mar 24 14:49 EVNT.49134354._000011.pool.root.1
[2026-03-24 15:54:14] -rw-r--r--. 2 boinc boinc     15845 Mar 24 14:49 start_atlas.sh
[2026-03-24 15:54:14] drwxrwx--x. 2 boinc boinc      4096 Mar 24 14:49 shared
[2026-03-24 15:54:14] -rw-r--r--. 2 boinc boinc    597547 Mar 24 14:49 input.tar.gz
[2026-03-24 15:54:14] -rw-r--r--. 1 boinc boinc         0 Mar 24 14:49 boinc_lockfile
[2026-03-24 15:54:14] -rw-r--r--. 1 boinc boinc      2617 Mar 24 14:49 pandaJob.out
[2026-03-24 15:54:14] -rw-------. 1 boinc boinc   1010550 Mar 24 14:49 agis_schedconf.cvmfs.json
[2026-03-24 15:54:14] -rw-------. 1 boinc boinc   1511579 Mar 24 14:49 agis_ddmendpoints.agis.ALL.json
[2026-03-24 15:54:14] -rw-------. 1 boinc boinc       443 Mar 24 14:49 workernode_map.json
[2026-03-24 15:54:14] drwx------. 5 boinc boinc      4096 Mar 24 14:49 pilot3
[2026-03-24 15:54:14] -rw-------. 1 boinc boinc 238185576 Mar 24 15:53 HITS.49176553._000583.pool.root.1
[2026-03-24 15:54:14] -rw-r--r--. 1 boinc boinc       529 Mar 24 15:53 boinc_task_state.xml
[2026-03-24 15:54:14] -rw-------. 1 boinc boinc      1027 Mar 24 15:53 memory_monitor_summary.json
[2026-03-24 15:54:14] -rw-------. 1 boinc boinc    380589 Mar 24 15:53 log.49176553._000583.job.log.tgz.1
[2026-03-24 15:54:14] -rw-------. 1 boinc boinc      6351 Mar 24 15:53 heartbeat.json
[2026-03-24 15:54:14] -rw-r--r--. 1 boinc boinc      8192 Mar 24 15:54 boinc_mmap_file
[2026-03-24 15:54:14] -rw-r--r--. 1 boinc boinc        27 Mar 24 15:54 wrapper_checkpoint.txt
[2026-03-24 15:54:14] -rw-------. 1 boinc boinc        95 Mar 24 15:54 pilot_heartbeat.json
[2026-03-24 15:54:14] -rw-------. 1 boinc boinc       823 Mar 24 15:54 pilotlog.txt
[2026-03-24 15:54:14] -rw-------. 1 boinc boinc    581509 Mar 24 15:54 log.49176553._000583.job.log.1
[2026-03-24 15:54:14] -rw-------. 1 boinc boinc       357 Mar 24 15:54 output.list
[2026-03-24 15:54:14] -rw-r--r--. 1 boinc boinc       620 Mar 24 15:54 runtime_log
[2026-03-24 15:54:14] -rw-------. 1 boinc boinc    983040 Mar 24 15:54 result.tar.gz
[2026-03-24 15:54:14] -rw-r--r--. 1 boinc boinc      9223 Mar 24 15:54 runtime_log.err
[2026-03-24 15:54:14] -rw-------. 1 boinc boinc       663 Mar 24 15:54 JoUNDm6lsO9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm2DAMDmD6Mn2n.diag
[2026-03-24 15:54:14] -rw-r--r--. 1 boinc boinc     19012 Mar 24 15:54 stderr.txt
[2026-03-24 15:54:14] HITS file was successfully produced:
[2026-03-24 15:54:14] -rw-------. 1 boinc boinc 238185576 Mar 24 15:53 shared/HITS.pool.root.1
[2026-03-24 15:54:14]  *** Contents of shared directory: ***
[2026-03-24 15:54:14] total 469492
[2026-03-24 15:54:14] -rw-r--r--. 2 boinc boinc 240965076 Mar 24 14:49 ATLAS.root_0
[2026-03-24 15:54:14] -rw-r--r--. 2 boinc boinc     15845 Mar 24 14:49 start_atlas.sh
[2026-03-24 15:54:14] -rw-r--r--. 2 boinc boinc    597547 Mar 24 14:49 input.tar.gz
[2026-03-24 15:54:14] -rw-------. 1 boinc boinc 238185576 Mar 24 15:53 HITS.pool.root.1
[2026-03-24 15:54:14] -rw-------. 1 boinc boinc    983040 Mar 24 15:54 result.tar.gz
15:54:16 (3531453): run_atlas exited; CPU time 43074.201096
15:54:16 (3531453): called boinc_finish(0)

</stderr_txt>
]]>

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