Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:57:24 (682185): wrapper (7.7.26015): starting
02:57:24 (682185): wrapper: running run_atlas (--nthreads 12)
[2026-03-25 02:57:24] Arguments: --nthreads 12
[2026-03-25 02:57:24] Threads: 12
[2026-03-25 02:57:24] Checking for CVMFS
[2026-03-25 02:57:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-25 02:57:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-25 02:57:28] Running cvmfs_config stat atlas.cern.ch
[2026-03-25 02:57:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-25 02:57:29] 2.13.3.0 631301 118 47396 157649 1 50 2936295 4096001 923 130560 0 216657 99.991 5621 483 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2026-03-25 02:57:29] CVMFS is ok
[2026-03-25 02:57:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-25 02:57:29] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-25 02:57:29] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-25 02:57:29] Further information can be found at the LHC@home message board.
[2026-03-25 02:57:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-25 02:57:29] Checking for apptainer binary...
[2026-03-25 02:57:29] apptainer is not installed, using version from CVMFS
[2026-03-25 02:57:29] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-25 02:57:29] dc
[2026-03-25 02:57:29] apptainer works
[2026-03-25 02:57:29] Set ATHENA_PROC_NUMBER=12
[2026-03-25 02:57:29] Set ATHENA_CORE_NUMBER=12
[2026-03-25 02:57:29] Starting ATLAS job with PandaID=7062985645
[2026-03-25 02:57:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-25 04:05:01]  *** The last 200 lines of the pilot log: ***
[2026-03-25 04:05:01]  guid=e51db5b9-a27d-4e69-880e-c413f183774c
[2026-03-25 04:05:01]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-25 04:05:01]  is_altstaged=None
[2026-03-25 04:05:01]  is_tar=False
[2026-03-25 04:05:01]  lfn=log.49269315._000056.job.log.tgz.1
[2026-03-25 04:05:01]  mtime=0
[2026-03-25 04:05:01]  protocol_id=None
[2026-03-25 04:05:01]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-25 04:05:01]  replicas=None
[2026-03-25 04:05:01]  scope=mc23_13p6TeV
[2026-03-25 04:05:01]  status=None
[2026-03-25 04:05:01]  status_code=0
[2026-03-25 04:05:01]  storage_token=
[2026-03-25 04:05:01]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-7062985645/log.49269315._000056.job.log.tgz.1
[2026-03-25 04:05:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8b/74/log.49269315._000056.job.log.tgz.1
[2026-03-25 04:05:01]  workdir=None
[2026-03-25 04:05:01] ]
[2026-03-25 04:05:01] 2026-03-24 17:04:19,250 | INFO     | transferring file log.49269315._000056.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-7062985645/log.49269315._000056.job.log.tgz.1 to /var/lib/boinc
[2026-03-25 04:05:01] 2026-03-24 17:04:19,251 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-7062985645/log.49269315._000056.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.492693
[2026-03-25 04:05:01] 2026-03-24 17:04:19,263 | INFO     | adding to output.list: log.49269315._000056.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8b/74/log.49269315._000056.job.log.tg
[2026-03-25 04:05:01] 2026-03-24 17:04:19,263 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-25 04:05:01] 2026-03-24 17:04:19,263 | INFO     | summary of transferred files:
[2026-03-25 04:05:01] 2026-03-24 17:04:19,263 | INFO     |  -- lfn=log.49269315._000056.job.log.tgz.1, status_code=0, status=transferred
[2026-03-25 04:05:01] 2026-03-24 17:04:19,263 | INFO     | stage-out finished correctly
[2026-03-25 04:05:01] 2026-03-24 17:04:19,652 | INFO     | time since job start (3990s) is within the limit (345600.0s)
[2026-03-25 04:05:01] 2026-03-24 17:04:20,491 | INFO     | monitor loop #307: job 0:7062985645 is in state 'finished'
[2026-03-25 04:05:01] 2026-03-24 17:04:20,491 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-25 04:05:01] 2026-03-24 17:04:20,905 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-25 04:05:01] 2026-03-24 17:04:20,936 | INFO     | job 7062985645 has state=finished
[2026-03-25 04:05:01] 2026-03-24 17:04:20,936 | INFO     | preparing for final server update for job 7062985645 in state='finished'
[2026-03-25 04:05:01] 2026-03-24 17:04:20,936 | INFO     | reading metadata from: /var/lib/boinc-client/slots/0/PanDA_Pilot-7062985645/jobReport.json
[2026-03-25 04:05:01] 2026-03-24 17:04:20,938 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/0/workernode_map.json
[2026-03-25 04:05:01] 2026-03-24 17:04:20,938 | INFO     | this job has now completed (state=finished)
[2026-03-25 04:05:01] 2026-03-24 17:04:20,938 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-25 04:05:01] 2026-03-24 17:04:20,938 | INFO     | log transfer has been attempted: DONE
[2026-03-25 04:05:01] 2026-03-24 17:04:20,938 | INFO     | job 7062985645 has finished - writing final server update
[2026-03-25 04:05:01] 2026-03-24 17:04:20,938 | INFO     | total number of processed events: 400 (read)
[2026-03-25 04:05:01] 2026-03-24 17:04:20,940 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-7062985645/memory_monitor_summary.json (trf name=prmon)
[2026-03-25 04:05:01] 2026-03-24 17:04:20,940 | INFO     | extracted standard info from prmon json
[2026-03-25 04:05:01] 2026-03-24 17:04:20,940 | INFO     | extracted standard memory fields from prmon json
[2026-03-25 04:05:01] 2026-03-24 17:04:20,940 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-25 04:05:01] 2026-03-24 17:04:20,941 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-25 04:05:01] 2026-03-24 17:04:20,941 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-25 04:05:01] 2026-03-24 17:04:20,941 | INFO     | fitting pss+swap vs Time
[2026-03-25 04:05:01] 2026-03-24 17:04:20,941 | INFO     | sum of square deviations: 60482994.5
[2026-03-25 04:05:01] 2026-03-24 17:04:20,941 | INFO     | sum of deviations: -5405439817.5
[2026-03-25 04:05:01] 2026-03-24 17:04:20,941 | INFO     | mean x: 1774369933.5
[2026-03-25 04:05:01] 2026-03-24 17:04:20,941 | INFO     | mean y: 2796345.120689655
[2026-03-25 04:05:01] 2026-03-24 17:04:20,941 | INFO     | intersect: 158580425789.63718
[2026-03-25 04:05:01] 2026-03-24 17:04:20,941 | INFO     | chi2: 0.0503048763650282
[2026-03-25 04:05:01] 2026-03-24 17:04:20,941 | INFO     | current memory leak: -89.37 B/s (using 58 data points, chi2=0.05)
[2026-03-25 04:05:01] 2026-03-24 17:04:20,942 | INFO     | could have reported an average CPU frequency of 3393 MHz (6 samples)
[2026-03-25 04:05:01] 2026-03-24 17:04:20,942 | INFO     | ..............................
[2026-03-25 04:05:01] 2026-03-24 17:04:20,942 | INFO     | . Timing measurements:
[2026-03-25 04:05:01] 2026-03-24 17:04:20,942 | INFO     | . get job = 0 s
[2026-03-25 04:05:01] 2026-03-24 17:04:20,942 | INFO     | . initial setup = 6 s
[2026-03-25 04:05:01] 2026-03-24 17:04:20,942 | INFO     | . payload setup = 7 s
[2026-03-25 04:05:01] 2026-03-24 17:04:20,942 | INFO     | . stage-in = 0 s
[2026-03-25 04:05:01] 2026-03-24 17:04:20,942 | INFO     | . payload execution = 3967 s
[2026-03-25 04:05:01] 2026-03-24 17:04:20,942 | INFO     | . stage-out = 0 s
[2026-03-25 04:05:01] 2026-03-24 17:04:20,942 | INFO     | . log creation = 0 s
[2026-03-25 04:05:01] 2026-03-24 17:04:20,942 | INFO     | ..............................
[2026-03-25 04:05:01] 2026-03-24 17:04:20,971 | INFO     | 
[2026-03-25 04:05:01] 2026-03-24 17:04:20,971 | INFO     | job summary report
[2026-03-25 04:05:01] 2026-03-24 17:04:20,971 | INFO     | --------------------------------------------------
[2026-03-25 04:05:01] 2026-03-24 17:04:20,971 | INFO     | PanDA job id: 7062985645
[2026-03-25 04:05:01] 2026-03-24 17:04:20,971 | INFO     | task id: 49269315
[2026-03-25 04:05:01] 2026-03-24 17:04:20,971 | INFO     | errors: (none)
[2026-03-25 04:05:01] 2026-03-24 17:04:20,971 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-25 04:05:01] 2026-03-24 17:04:20,971 | INFO     | pilot state: finished 
[2026-03-25 04:05:01] 2026-03-24 17:04:20,971 | INFO     | transexitcode: 0
[2026-03-25 04:05:01] 2026-03-24 17:04:20,971 | INFO     | exeerrorcode: 0
[2026-03-25 04:05:01] 2026-03-24 17:04:20,972 | INFO     | exeerrordiag: 
[2026-03-25 04:05:01] 2026-03-24 17:04:20,972 | INFO     | exitcode: 0
[2026-03-25 04:05:01] 2026-03-24 17:04:20,972 | INFO     | exitmsg: OK
[2026-03-25 04:05:01] 2026-03-24 17:04:20,972 | INFO     | cpuconsumptiontime: 43102 s
[2026-03-25 04:05:01] 2026-03-24 17:04:20,972 | INFO     | nevents: 400
[2026-03-25 04:05:01] 2026-03-24 17:04:20,972 | INFO     | neventsw: 0
[2026-03-25 04:05:01] 2026-03-24 17:04:20,972 | INFO     | pid: 690840
[2026-03-25 04:05:01] 2026-03-24 17:04:20,972 | INFO     | pgrp: 690840
[2026-03-25 04:05:01] 2026-03-24 17:04:20,972 | INFO     | corecount: 12
[2026-03-25 04:05:01] 2026-03-24 17:04:20,972 | INFO     | event service: False
[2026-03-25 04:05:01] 2026-03-24 17:04:20,972 | INFO     | sizes: {0: 2280266, 11: 2280266, 3977: 2306205, 3978: 2306204, 3979: 2315272, 3981: 2315650}
[2026-03-25 04:05:01] 2026-03-24 17:04:20,972 | INFO     | --------------------------------------------------
[2026-03-25 04:05:01] 2026-03-24 17:04:20,972 | INFO     | 
[2026-03-25 04:05:01] 2026-03-24 17:04:20,972 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2026-03-25 04:05:01] 2026-03-24 17:04:20,986 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-25 04:05:01] 2026-03-24 17:04:20,986 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-25 04:05:01] 2026-03-24 17:04:20,986 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-25 04:05:01] 2026-03-24 17:04:20,986 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-25 04:05:01] 2026-03-24 17:04:20,986 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-25 04:05:01] 2026-03-24 17:04:20,986 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-25 04:05:01] 2026-03-24 17:04:20,986 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-25 04:05:01] 2026-03-24 17:04:20,986 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-25 04:05:01] 2026-03-24 17:04:20,986 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-25 04:05:01] 2026-03-24 17:04:20,987 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-25 04:05:01] 2026-03-24 17:04:20,987 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-25 04:05:01] 2026-03-24 17:04:20,987 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-25 04:05:01] 2026-03-24 17:04:20,987 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-25 04:05:01] 2026-03-24 17:04:20,987 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-25 04:05:01] 2026-03-24 17:04:20,987 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-25 04:05:01] 2026-03-24 17:04:20,987 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-25 04:05:01] 2026-03-24 17:04:20,987 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-25 04:05:01] 2026-03-24 17:04:20,987 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-25 04:05:01] 2026-03-24 17:04:20,987 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-25 04:05:01] 2026-03-24 17:04:20,987 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-25 04:05:01] 2026-03-24 17:04:20,987 | INFO     | job 7062985645 has completed (purged errors)
[2026-03-25 04:05:01] 2026-03-24 17:04:20,987 | INFO     | overall cleanup function is called
[2026-03-25 04:05:01] 2026-03-24 17:04:21,994 | INFO     | --- collectZombieJob: --- 10, [690840]
[2026-03-25 04:05:01] 2026-03-24 17:04:21,994 | INFO     | zombie collector waiting for pid 690840
[2026-03-25 04:05:01] 2026-03-24 17:04:21,994 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-25 04:05:01] 2026-03-24 17:04:21,994 | INFO     | collected zombie processes
[2026-03-25 04:05:01] 2026-03-24 17:04:21,994 | INFO     | will attempt to kill all subprocesses of pid=690840
[2026-03-25 04:05:01] 2026-03-24 17:04:22,040 | INFO     | process IDs to be killed: [690840] (in reverse order)
[2026-03-25 04:05:01] 2026-03-24 17:04:22,070 | WARNING  | found no corresponding commands to process id(s)
[2026-03-25 04:05:01] 2026-03-24 17:04:22,070 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-25 04:05:01] 2026-03-24 17:04:22,072 | INFO     | did not find any defunct processes belonging to 690840
[2026-03-25 04:05:01] 2026-03-24 17:04:22,073 | INFO     | did not find any defunct processes belonging to 690840
[2026-03-25 04:05:01] 2026-03-24 17:04:22,073 | INFO     | ready for new job
[2026-03-25 04:05:01] 2026-03-24 17:04:22,073 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-25 04:05:01] 2026-03-24 17:04:22,074 | INFO     | **************************************
[2026-03-25 04:05:01] 2026-03-24 17:04:22,074 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-25 04:05:01] 2026-03-24 17:04:22,074 | INFO     | **************************************
[2026-03-25 04:05:01] 2026-03-24 17:04:22,074 | INFO     | 
[2026-03-25 04:05:01] 2026-03-24 17:04:22,075 | INFO     | pilot is running in a VM
[2026-03-25 04:05:01] 2026-03-24 17:04:22,075 | INFO     | architecture information:
[2026-03-25 04:05:01] 2026-03-24 17:04:22,075 | INFO     | executing command: cat /etc/os-release
[2026-03-25 04:05:01] 2026-03-24 17:04:22,084 | INFO     | cat /etc/os-release:
[2026-03-25 04:05:01] NAME="CentOS Linux"
[2026-03-25 04:05:01] VERSION="7 (Core)"
[2026-03-25 04:05:01] ID="centos"
[2026-03-25 04:05:01] ID_LIKE="rhel fedora"
[2026-03-25 04:05:01] VERSION_ID="7"
[2026-03-25 04:05:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-25 04:05:01] ANSI_COLOR="0;31"
[2026-03-25 04:05:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-25 04:05:01] HOME_URL="https://www.centos.org/"
[2026-03-25 04:05:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-25 04:05:01] 
[2026-03-25 04:05:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-25 04:05:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-25 04:05:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-25 04:05:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-25 04:05:01] 
[2026-03-25 04:05:01] 2026-03-24 17:04:22,084 | INFO     | **************************************
[2026-03-25 04:05:01] 2026-03-24 17:04:22,587 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2026-03-25 04:05:01] 2026-03-24 17:04:22,598 | INFO     | sufficient remaining disk space (175602925568 B)
[2026-03-25 04:05:01] 2026-03-24 17:04:22,598 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-25 04:05:01] 2026-03-24 17:04:22,598 | INFO     | current server update state: UPDATING_FINAL
[2026-03-25 04:05:01] 2026-03-24 17:04:22,598 | INFO     | update_server=False
[2026-03-25 04:05:01] 2026-03-24 17:04:22,598 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-25 04:05:01] 2026-03-24 17:04:22,598 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-25 04:05:01] 2026-03-24 17:04:22,598 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-25 04:05:01] 2026-03-24 17:04:22,599 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-25 04:05:01] 2026-03-24 17:04:22,927 | INFO     | all job control threads have been joined
[2026-03-25 04:05:01] 2026-03-24 17:04:22,993 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-25 04:05:01] 2026-03-24 17:04:22,993 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-25 04:05:01] 2026-03-24 17:04:22,993 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-25 04:05:01] 2026-03-24 17:04:22,993 | INFO     | will abort loop
[2026-03-25 04:05:01] 2026-03-24 17:04:23,603 | INFO     | [job] retrieve thread has finished
[2026-03-25 04:05:01] 2026-03-24 17:04:23,604 | INFO     | [job] queue monitor thread has finished
[2026-03-25 04:05:01] 2026-03-24 17:04:23,636 | INFO     | all payload control threads have been joined
[2026-03-25 04:05:01] 2026-03-24 17:04:23,643 | INFO     | all data control threads have been joined
[2026-03-25 04:05:01] 2026-03-24 17:04:23,672 | INFO     | [payload] validate_post thread has finished
[2026-03-25 04:05:01] 2026-03-24 17:04:23,876 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-25 04:05:01] 2026-03-24 17:04:23,932 | INFO     | [job] control thread has finished
[2026-03-25 04:05:01] 2026-03-24 17:04:23,998 | INFO     | [job] job monitor thread has finished
[2026-03-25 04:05:01] 2026-03-24 17:04:24,526 | INFO     | [payload] execute_payloads thread has finished
[2026-03-25 04:05:01] 2026-03-24 17:04:24,604 | INFO     | [data] copytool_out thread has finished
[2026-03-25 04:05:01] 2026-03-24 17:04:24,641 | INFO     | [payload] control thread has finished
[2026-03-25 04:05:01] 2026-03-24 17:04:24,648 | INFO     | [data] control thread has finished
[2026-03-25 04:05:01] 2026-03-24 17:04:24,765 | INFO     | [payload] failed_post thread has finished
[2026-03-25 04:05:01] 2026-03-24 17:04:24,783 | INFO     | [job] validate thread has finished
[2026-03-25 04:05:01] 2026-03-24 17:04:24,900 | INFO     | [job] create_data_payload thread has finished
[2026-03-25 04:05:01] 2026-03-24 17:04:24,965 | INFO     | [payload] validate_pre thread has finished
[2026-03-25 04:05:01] 2026-03-24 17:04:25,056 | INFO     | [data] copytool_in thread has finished
[2026-03-25 04:05:01] 2026-03-24 17:04:26,604 | INFO     | [data] queue_monitor thread has finished
[2026-03-25 04:05:01] 2026-03-24 17:04:52,793 | INFO     | PID=686323 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-25 04:05:01] 2026-03-24 17:04:52,793 | INFO     | .. there are 2 such processes running
[2026-03-25 04:05:01] 2026-03-24 17:04:52,793 | INFO     | found 0 job(s) in 20 queues
[2026-03-25 04:05:01] 2026-03-24 17:04:52,793 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-25 04:05:01] 2026-03-24 17:04:52,794 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-25 04:05:01] 2026-03-24 17:04:55,067 | INFO     | [monitor] cgroup control has ended
[2026-03-25 04:05:01] 2026-03-24 17:04:55,936 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 135155343943488)>', '<ExcThread(monitor, started 135154794211072)>']
[2026-03-25 04:05:01] 2026-03-24 17:04:56,812 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-25 04:05:01] 2026-03-24 17:04:56,813 | INFO     | [monitor] control thread has ended
[2026-03-25 04:05:01] 2026-03-24 17:05:00,961 | INFO     | all workflow threads have been joined
[2026-03-25 04:05:01] 2026-03-24 17:05:00,961 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-25 04:05:01] 2026-03-24 17:05:00,962 | INFO     | traces error code: 0
[2026-03-25 04:05:01] 2026-03-24 17:05:00,962 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-25 04:05:01] 2026-03-24 17:05:01,014 [wrapper] ==== pilot stdout END ====
[2026-03-25 04:05:01] 2026-03-24 17:05:01,016 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-25 04:05:01] 2026-03-24 17:05:01,018 [wrapper] pilotpid: 686323
[2026-03-25 04:05:01] 2026-03-24 17:05:01,020 [wrapper] Pilot exit status: 0
[2026-03-25 04:05:01] 2026-03-24 17:05:01,027 [wrapper] pandaids: 7062985645
[2026-03-25 04:05:01] 2026-03-24 17:05:01,044 [wrapper] cleanup supervisor_pilot  708946 686324
[2026-03-25 04:05:01] 2026-03-24 17:05:01,047 [wrapper] Test setup, not cleaning
[2026-03-25 04:05:01] 2026-03-24 17:05:01,049 [wrapper] apfmon messages muted
[2026-03-25 04:05:01] 2026-03-24 17:05:01,051 [wrapper] ==== wrapper stdout END ====
[2026-03-25 04:05:01] 2026-03-24 17:05:01,052 [wrapper] ==== wrapper stderr END ====
[2026-03-25 04:05:01]  *** Error codes and diagnostics ***
[2026-03-25 04:05:01]     "exeErrorCode": 0,
[2026-03-25 04:05:01]     "exeErrorDiag": "",
[2026-03-25 04:05:01]     "pilotErrorCode": 0,
[2026-03-25 04:05:01]     "pilotErrorDiag": "",
[2026-03-25 04:05:01]  *** Listing of results directory ***
[2026-03-25 04:05:01] total 479948
[2026-03-25 04:05:01] -rw-r--r-- 1 boinc boinc    585013 Mar 23 19:14 pilot3.tar.gz
[2026-03-25 04:05:01] -rwx------ 1 boinc boinc     36322 Mar 23 19:18 runpilot2-wrapper.sh
[2026-03-25 04:05:01] -rw-r--r-- 1 boinc boinc      5111 Mar 23 19:21 queuedata.json
[2026-03-25 04:05:01] -rw-r--r-- 1 boinc boinc       100 Mar 25 02:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-25 04:05:01] -rwxr-xr-x 1 boinc boinc      7986 Mar 25 02:57 run_atlas
[2026-03-25 04:05:01] -rw-r--r-- 1 boinc boinc       105 Mar 25 02:57 job.xml
[2026-03-25 04:05:01] -rw-r--r-- 2 boinc boinc 253480233 Mar 25 02:57 EVNT.49124233._000001.pool.root.1
[2026-03-25 04:05:01] -rw-r--r-- 2 boinc boinc    597540 Mar 25 02:57 input.tar.gz
[2026-03-25 04:05:01] -rw-r--r-- 2 boinc boinc     15845 Mar 25 02:57 start_atlas.sh
[2026-03-25 04:05:01] -rw-r--r-- 1 boinc boinc         0 Mar 25 02:57 boinc_setup_complete
[2026-03-25 04:05:01] drwxrwx--x 2 boinc boinc      4096 Mar 25 02:57 shared
[2026-03-25 04:05:01] -rw-r--r-- 1 boinc boinc      6366 Mar 25 02:57 init_data.xml
[2026-03-25 04:05:01] -rw-r--r-- 1 boinc boinc         0 Mar 25 02:57 boinc_lockfile
[2026-03-25 04:05:01] -rw-r--r-- 1 boinc boinc      2585 Mar 25 02:57 pandaJob.out
[2026-03-25 04:05:01] -rw------- 1 boinc boinc   1010844 Mar 25 02:57 agis_schedconf.cvmfs.json
[2026-03-25 04:05:01] -rw------- 1 boinc boinc   1511579 Mar 25 02:57 agis_ddmendpoints.agis.ALL.json
[2026-03-25 04:05:01] -rw------- 1 boinc boinc       416 Mar 25 02:57 workernode_map.json
[2026-03-25 04:05:01] drwx------ 5 boinc boinc      4096 Mar 25 02:57 pilot3
[2026-03-25 04:05:01] -rw------- 1 boinc boinc 232091153 Mar 25 04:03 HITS.49269315._000056.pool.root.1
[2026-03-25 04:05:01] -rw-r--r-- 1 boinc boinc       529 Mar 25 04:04 boinc_task_state.xml
[2026-03-25 04:05:01] -rw------- 1 boinc boinc      1016 Mar 25 04:04 memory_monitor_summary.json
[2026-03-25 04:05:01] -rw------- 1 boinc boinc    370926 Mar 25 04:04 log.49269315._000056.job.log.tgz.1
[2026-03-25 04:05:01] -rw------- 1 boinc boinc        95 Mar 25 04:04 pilot_heartbeat.json
[2026-03-25 04:05:01] -rw------- 1 boinc boinc      6253 Mar 25 04:04 heartbeat.json
[2026-03-25 04:05:01] -rw-r--r-- 1 boinc boinc        27 Mar 25 04:04 wrapper_checkpoint.txt
[2026-03-25 04:05:01] -rw-r--r-- 1 boinc boinc      8192 Mar 25 04:04 boinc_mmap_file
[2026-03-25 04:05:01] -rw------- 1 boinc boinc      5074 Mar 25 04:05 pilotlog.txt
[2026-03-25 04:05:01] -rw------- 1 boinc boinc    607747 Mar 25 04:05 log.49269315._000056.job.log.1
[2026-03-25 04:05:01] -rw------- 1 boinc boinc       357 Mar 25 04:05 output.list
[2026-03-25 04:05:01] -rw-r--r-- 1 boinc boinc       620 Mar 25 04:05 runtime_log
[2026-03-25 04:05:01] -rw------- 1 boinc boinc    993280 Mar 25 04:05 result.tar.gz
[2026-03-25 04:05:01] -rw------- 1 boinc boinc       636 Mar 25 04:05 51FMDmlfpO9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmJs9LDmANWEbn.diag
[2026-03-25 04:05:01] -rw-r--r-- 1 boinc boinc      8856 Mar 25 04:05 runtime_log.err
[2026-03-25 04:05:01] -rw-r--r-- 1 boinc boinc     21437 Mar 25 04:05 stderr.txt
[2026-03-25 04:05:01] HITS file was successfully produced:
[2026-03-25 04:05:01] -rw------- 1 boinc boinc 232091153 Mar 25 04:03 shared/HITS.pool.root.1
[2026-03-25 04:05:01]  *** Contents of shared directory: ***
[2026-03-25 04:05:01] total 475772
[2026-03-25 04:05:01] -rw-r--r-- 2 boinc boinc 253480233 Mar 25 02:57 ATLAS.root_0
[2026-03-25 04:05:01] -rw-r--r-- 2 boinc boinc    597540 Mar 25 02:57 input.tar.gz
[2026-03-25 04:05:01] -rw-r--r-- 2 boinc boinc     15845 Mar 25 02:57 start_atlas.sh
[2026-03-25 04:05:01] -rw------- 1 boinc boinc 232091153 Mar 25 04:03 HITS.pool.root.1
[2026-03-25 04:05:01] -rw------- 1 boinc boinc    993280 Mar 25 04:05 result.tar.gz
04:05:02 (682185): run_atlas exited; CPU time 43115.538052
04:05:02 (682185): called boinc_finish(0)

</stderr_txt>
]]>

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