Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:25:45 (532899): wrapper (7.7.26015): starting
00:25:45 (532899): wrapper: running run_atlas (--nthreads 4)
[2026-03-24 00:25:45] Arguments: --nthreads 4
[2026-03-24 00:25:45] Threads: 4
[2026-03-24 00:25:45] Checking for CVMFS
[2026-03-24 00:25:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-24 00:25:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-24 00:25:46] Running cvmfs_config stat atlas.cern.ch
[2026-03-24 00:25:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-24 00:25:46] 2.9.2.0 324370 1953 86488 157618 2 188 32029504 36864001 0 130560 0 781645 99.984 56220 14261 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-24 00:25:46] CVMFS is ok
[2026-03-24 00:25:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-24 00:25:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-24 00:25:46] Further information can be found at the LHC@home message board.
[2026-03-24 00:25:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-24 00:25:46] Checking for apptainer binary...
[2026-03-24 00:25:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-24 00:25:46] Running /usr/bin/apptainer --version
[2026-03-24 00:25:46] apptainer version 1.4.1-1.1
[2026-03-24 00:25:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-24 00:25:46] thA338
[2026-03-24 00:25:46] apptainer works
[2026-03-24 00:25:46] Set ATHENA_PROC_NUMBER=4
[2026-03-24 00:25:46] Set ATHENA_CORE_NUMBER=4
[2026-03-24 00:25:46] Starting ATLAS job with PandaID=7062625422
[2026-03-24 00:25:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-24 03:45:21]  *** The last 200 lines of the pilot log: ***
[2026-03-24 03:45:21] 2026-03-24 02:44:26,758 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-24 03:45:21] 2026-03-24 02:44:26,758 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-24 03:45:21] 2026-03-24 02:44:26,758 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-24 03:45:21] 2026-03-24 02:44:26,758 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-24 03:45:21] 2026-03-24 02:44:26,758 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-24 03:45:21] 2026-03-24 02:44:26,758 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-24 03:45:21] 2026-03-24 02:44:26,758 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-24 03:45:21] 2026-03-24 02:44:26,758 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-24 03:45:21] 2026-03-24 02:44:26,758 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-24 03:45:21] 2026-03-24 02:44:26,758 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-24 03:45:21] 2026-03-24 02:44:26,758 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-24 03:45:21] 2026-03-24 02:44:26,758 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-24 03:45:21] 2026-03-24 02:44:26,758 | INFO     | job 7062625422 has completed (purged errors)
[2026-03-24 03:45:21] 2026-03-24 02:44:26,758 | INFO     | overall cleanup function is called
[2026-03-24 03:45:21] 2026-03-24 02:44:27,765 | INFO     | --- collectZombieJob: --- 10, [541555]
[2026-03-24 03:45:21] 2026-03-24 02:44:27,765 | INFO     | zombie collector waiting for pid 541555
[2026-03-24 03:45:21] 2026-03-24 02:44:27,765 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-24 03:45:21] 2026-03-24 02:44:27,766 | INFO     | collected zombie processes
[2026-03-24 03:45:21] 2026-03-24 02:44:27,766 | INFO     | will attempt to kill all subprocesses of pid=541555
[2026-03-24 03:45:21] 2026-03-24 02:44:27,811 | INFO     | process IDs to be killed: [541555] (in reverse order)
[2026-03-24 03:45:21] 2026-03-24 02:44:27,847 | WARNING  | found no corresponding commands to process id(s)
[2026-03-24 03:45:21] 2026-03-24 02:44:27,848 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-24 03:45:21] 2026-03-24 02:44:27,849 | INFO     | did not find any defunct processes belonging to 541555
[2026-03-24 03:45:21] 2026-03-24 02:44:27,851 | INFO     | did not find any defunct processes belonging to 541555
[2026-03-24 03:45:21] 2026-03-24 02:44:27,851 | INFO     | ready for new job
[2026-03-24 03:45:21] 2026-03-24 02:44:27,851 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-24 03:45:21] 2026-03-24 02:44:27,852 | INFO     | **************************************
[2026-03-24 03:45:21] 2026-03-24 02:44:27,852 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-24 03:45:21] 2026-03-24 02:44:27,852 | INFO     | **************************************
[2026-03-24 03:45:21] 2026-03-24 02:44:27,852 | INFO     | 
[2026-03-24 03:45:21] 2026-03-24 02:44:27,852 | INFO     | architecture information:
[2026-03-24 03:45:21] 2026-03-24 02:44:27,852 | INFO     | executing command: cat /etc/os-release
[2026-03-24 03:45:21] 2026-03-24 02:44:27,867 | INFO     | cat /etc/os-release:
[2026-03-24 03:45:21] NAME="CentOS Linux"
[2026-03-24 03:45:21] VERSION="7 (Core)"
[2026-03-24 03:45:21] ID="centos"
[2026-03-24 03:45:21] ID_LIKE="rhel fedora"
[2026-03-24 03:45:21] VERSION_ID="7"
[2026-03-24 03:45:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-24 03:45:21] ANSI_COLOR="0;31"
[2026-03-24 03:45:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-24 03:45:21] HOME_URL="https://www.centos.org/"
[2026-03-24 03:45:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-24 03:45:21] 
[2026-03-24 03:45:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-24 03:45:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-24 03:45:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-24 03:45:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-24 03:45:21] 
[2026-03-24 03:45:21] 2026-03-24 02:44:27,867 | INFO     | **************************************
[2026-03-24 03:45:21] 2026-03-24 02:44:28,370 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-24 03:45:21] 2026-03-24 02:44:28,389 | INFO     | sufficient remaining disk space (226870951936 B)
[2026-03-24 03:45:21] 2026-03-24 02:44:28,389 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-24 03:45:21] 2026-03-24 02:44:28,390 | INFO     | current server update state: UPDATING_FINAL
[2026-03-24 03:45:21] 2026-03-24 02:44:28,390 | INFO     | update_server=False
[2026-03-24 03:45:21] 2026-03-24 02:44:28,390 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-24 03:45:21] 2026-03-24 02:44:28,390 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-24 03:45:21] 2026-03-24 02:44:28,490 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-24 03:45:21] 2026-03-24 02:44:28,664 | INFO     | all data control threads have been joined
[2026-03-24 03:45:21] 2026-03-24 02:44:28,672 | INFO     | all job control threads have been joined
[2026-03-24 03:45:21] 2026-03-24 02:44:29,072 | INFO     | all payload control threads have been joined
[2026-03-24 03:45:21] 2026-03-24 02:44:29,350 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-24 03:45:21] 2026-03-24 02:44:29,350 | INFO     | aborting loop
[2026-03-24 03:45:21] 2026-03-24 02:44:29,395 | INFO     | [job] queue monitor thread has finished
[2026-03-24 03:45:21] 2026-03-24 02:44:29,396 | INFO     | [job] retrieve thread has finished
[2026-03-24 03:45:21] 2026-03-24 02:44:29,647 | INFO     | [payload] failed_post thread has finished
[2026-03-24 03:45:21] 2026-03-24 02:44:29,669 | INFO     | [data] control thread has finished
[2026-03-24 03:45:21] 2026-03-24 02:44:29,678 | INFO     | [job] control thread has finished
[2026-03-24 03:45:21] 2026-03-24 02:44:29,686 | INFO     | [payload] execute_payloads thread has finished
[2026-03-24 03:45:21] 2026-03-24 02:44:29,915 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-24 03:45:21] 2026-03-24 02:44:30,002 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-24 03:45:21] 2026-03-24 02:44:30,077 | INFO     | [payload] control thread has finished
[2026-03-24 03:45:21] 2026-03-24 02:44:30,276 | INFO     | [job] validate thread has finished
[2026-03-24 03:45:21] 2026-03-24 02:44:30,338 | INFO     | [payload] validate_post thread has finished
[2026-03-24 03:45:21] 2026-03-24 02:44:30,355 | INFO     | [job] job monitor thread has finished
[2026-03-24 03:45:21] 2026-03-24 02:44:30,416 | INFO     | [job] create_data_payload thread has finished
[2026-03-24 03:45:21] 2026-03-24 02:44:30,423 | INFO     | [payload] validate_pre thread has finished
[2026-03-24 03:45:21] 2026-03-24 02:44:30,497 | INFO     | [data] copytool_out thread has finished
[2026-03-24 03:45:21] 2026-03-24 02:44:30,667 | INFO     | [data] copytool_in thread has finished
[2026-03-24 03:45:21] 2026-03-24 02:44:34,008 | INFO     | [data] queue_monitor thread has finished
[2026-03-24 03:45:21] 2026-03-24 02:44:58,124 | INFO     | PID=537030 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-24 03:45:21] 2026-03-24 02:44:58,124 | INFO     | found 0 job(s) in 20 queues
[2026-03-24 03:45:21] 2026-03-24 02:44:58,124 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-24 03:45:21] 2026-03-24 02:44:58,124 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-24 03:45:21] 2026-03-24 02:45:14,993 | INFO     | [monitor] cgroup control has ended
[2026-03-24 03:45:21] 2026-03-24 02:45:16,279 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140657149019968)>', '<ExcThread(monitor, started 140656068515584)>']
[2026-03-24 03:45:21] 2026-03-24 02:45:17,226 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-24 03:45:21] 2026-03-24 02:45:17,226 | INFO     | [monitor] control thread has ended
[2026-03-24 03:45:21] 2026-03-24 02:45:21,304 | INFO     | all workflow threads have been joined
[2026-03-24 03:45:21] 2026-03-24 02:45:21,304 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-24 03:45:21] 2026-03-24 02:45:21,305 | INFO     | traces error code: 0
[2026-03-24 03:45:21] 2026-03-24 02:45:21,305 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-24 03:45:21] 2026-03-24 02:45:21,385 [wrapper] ==== pilot stdout END ====
[2026-03-24 03:45:21] 2026-03-24 02:45:21,390 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-24 03:45:21] 2026-03-24 02:45:21,394 [wrapper] pilotpid: 537030
[2026-03-24 03:45:21] 2026-03-24 02:45:21,398 [wrapper] Pilot exit status: 0
[2026-03-24 03:45:21] 2026-03-24 02:45:21,411 [wrapper] pandaids: 7062625422
[2026-03-24 03:45:21] 2026-03-24 02:45:21,435 [wrapper] cleanup supervisor_pilot  548126 537031
[2026-03-24 03:45:21] 2026-03-24 02:45:21,439 [wrapper] Test setup, not cleaning
[2026-03-24 03:45:21] 2026-03-24 02:45:21,443 [wrapper] apfmon messages muted
[2026-03-24 03:45:21] 2026-03-24 02:45:21,447 [wrapper] ==== wrapper stdout END ====
[2026-03-24 03:45:21] 2026-03-24 02:45:21,451 [wrapper] ==== wrapper stderr END ====
[2026-03-24 03:45:21]  *** Error codes and diagnostics ***
[2026-03-24 03:45:21]     "exeErrorCode": 0,
[2026-03-24 03:45:21]     "exeErrorDiag": "",
[2026-03-24 03:45:21]     "pilotErrorCode": 0,
[2026-03-24 03:45:21]     "pilotErrorDiag": "",
[2026-03-24 03:45:21]  *** Listing of results directory ***
[2026-03-24 03:45:21] total 484424
[2026-03-24 03:45:21] -rw-r--r-- 1 boinc boinc    585013 Mar 23 02:27 pilot3.tar.gz
[2026-03-24 03:45:21] -rwx------ 1 boinc boinc     36322 Mar 23 02:28 runpilot2-wrapper.sh
[2026-03-24 03:45:21] -rw-r--r-- 1 boinc boinc      5111 Mar 23 02:30 queuedata.json
[2026-03-24 03:45:21] -rw-r--r-- 1 boinc boinc       100 Mar 24 00:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-24 03:45:21] -rwxr-xr-x 1 boinc boinc      7986 Mar 24 00:25 run_atlas
[2026-03-24 03:45:21] -rw-r--r-- 1 boinc boinc       105 Mar 24 00:25 job.xml
[2026-03-24 03:45:21] -rw-r--r-- 2 boinc boinc 242748203 Mar 24 00:25 EVNT.49132464._000005.pool.root.1
[2026-03-24 03:45:21] -rw-r--r-- 2 boinc boinc    597531 Mar 24 00:25 input.tar.gz
[2026-03-24 03:45:21] -rw-r--r-- 2 boinc boinc     15845 Mar 24 00:25 start_atlas.sh
[2026-03-24 03:45:21] drwxrwx--x 2 boinc boinc      4096 Mar 24 00:25 shared
[2026-03-24 03:45:21] -rw-r--r-- 1 boinc boinc         0 Mar 24 00:25 boinc_setup_complete
[2026-03-24 03:45:21] -rw-r--r-- 1 boinc boinc      6376 Mar 24 00:25 init_data.xml
[2026-03-24 03:45:21] -rw-r--r-- 1 boinc boinc         0 Mar 24 00:25 boinc_lockfile
[2026-03-24 03:45:21] -rw-r--r-- 1 boinc boinc      2613 Mar 24 00:25 pandaJob.out
[2026-03-24 03:45:21] -rw------- 1 boinc boinc   1010851 Mar 24 00:25 agis_schedconf.cvmfs.json
[2026-03-24 03:45:21] -rw------- 1 boinc boinc       421 Mar 24 00:25 workernode_map.json
[2026-03-24 03:45:21] drwx------ 5 boinc boinc      4096 Mar 24 00:26 pilot3
[2026-03-24 03:45:21] -rw------- 1 boinc boinc 245288471 Mar 24 03:43 HITS.49176079._000111.pool.root.1
[2026-03-24 03:45:21] -rw------- 1 boinc boinc        95 Mar 24 03:44 pilot_heartbeat.json
[2026-03-24 03:45:21] -rw-r--r-- 1 boinc boinc       530 Mar 24 03:44 boinc_task_state.xml
[2026-03-24 03:45:21] -rw------- 1 boinc boinc      1025 Mar 24 03:44 memory_monitor_summary.json
[2026-03-24 03:45:21] -rw------- 1 boinc boinc   1511579 Mar 24 03:44 agis_ddmendpoints.agis.ALL.json
[2026-03-24 03:45:21] -rw------- 1 boinc boinc    364801 Mar 24 03:44 log.49176079._000111.job.log.tgz.1
[2026-03-24 03:45:21] -rw------- 1 boinc boinc      6303 Mar 24 03:44 heartbeat.json
[2026-03-24 03:45:21] -rw-r--r-- 1 boinc boinc      8192 Mar 24 03:45 boinc_mmap_file
[2026-03-24 03:45:21] -rw-r--r-- 1 boinc boinc        28 Mar 24 03:45 wrapper_checkpoint.txt
[2026-03-24 03:45:21] -rw------- 1 boinc boinc      4747 Mar 24 03:45 pilotlog.txt
[2026-03-24 03:45:21] -rw------- 1 boinc boinc   1678252 Mar 24 03:45 log.49176079._000111.job.log.1
[2026-03-24 03:45:21] -rw------- 1 boinc boinc       357 Mar 24 03:45 output.list
[2026-03-24 03:45:21] -rw-r--r-- 1 boinc boinc       620 Mar 24 03:45 runtime_log
[2026-03-24 03:45:21] -rw------- 1 boinc boinc   2058240 Mar 24 03:45 result.tar.gz
[2026-03-24 03:45:21] -rw-r--r-- 1 boinc boinc      8897 Mar 24 03:45 runtime_log.err
[2026-03-24 03:45:21] -rw------- 1 boinc boinc       661 Mar 24 03:45 O3sLDmaGjO9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmMQ8LDmgZnwjm.diag
[2026-03-24 03:45:21] -rw-r--r-- 1 boinc boinc     12020 Mar 24 03:45 stderr.txt
[2026-03-24 03:45:21] HITS file was successfully produced:
[2026-03-24 03:45:21] -rw------- 1 boinc boinc 245288471 Mar 24 03:43 shared/HITS.pool.root.1
[2026-03-24 03:45:21]  *** Contents of shared directory: ***
[2026-03-24 03:45:21] total 479220
[2026-03-24 03:45:21] -rw-r--r-- 2 boinc boinc 242748203 Mar 24 00:25 ATLAS.root_0
[2026-03-24 03:45:21] -rw-r--r-- 2 boinc boinc    597531 Mar 24 00:25 input.tar.gz
[2026-03-24 03:45:21] -rw-r--r-- 2 boinc boinc     15845 Mar 24 00:25 start_atlas.sh
[2026-03-24 03:45:21] -rw------- 1 boinc boinc 245288471 Mar 24 03:43 HITS.pool.root.1
[2026-03-24 03:45:21] -rw------- 1 boinc boinc   2058240 Mar 24 03:45 result.tar.gz
03:45:23 (532899): run_atlas exited; CPU time 45904.761166
03:45:23 (532899): called boinc_finish(0)

</stderr_txt>
]]>

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