Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:16:53 (2905177): wrapper (7.7.26015): starting
08:16:53 (2905177): wrapper: running run_atlas (--nthreads 2)
[2026-03-24 08:16:53] Arguments: --nthreads 2
[2026-03-24 08:16:53] Threads: 2
[2026-03-24 08:16:53] Checking for CVMFS
[2026-03-24 08:16:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-24 08:16:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-24 08:16:53] Running cvmfs_config stat atlas.cern.ch
[2026-03-24 08:16:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-24 08:16:54] 2.9.2.0 2720343 2264 55480 157634 0 50 26777258 36864001 0 130560 0 464936 99.970 68030 15685 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-24 08:16:54] CVMFS is ok
[2026-03-24 08:16:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-24 08:16:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-24 08:16:54] Further information can be found at the LHC@home message board.
[2026-03-24 08:16:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-24 08:16:54] Checking for apptainer binary...
[2026-03-24 08:16:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-24 08:16:54] Running /usr/bin/apptainer --version
[2026-03-24 08:16:54] apptainer version 1.4.1-1.1
[2026-03-24 08:16:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-24 08:16:54] atlasA219
[2026-03-24 08:16:54] apptainer works
[2026-03-24 08:16:54] Set ATHENA_PROC_NUMBER=2
[2026-03-24 08:16:54] Set ATHENA_CORE_NUMBER=2
[2026-03-24 08:16:54] Starting ATLAS job with PandaID=7062824564
[2026-03-24 08:16:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-24 14:01:41]  *** The last 200 lines of the pilot log: ***
[2026-03-24 14:01:41] 2026-03-24 13:00:44,494 | INFO     | collected zombie processes
[2026-03-24 14:01:41] 2026-03-24 13:00:44,494 | INFO     | will attempt to kill all subprocesses of pid=2913619
[2026-03-24 14:01:41] 2026-03-24 13:00:44,533 | INFO     | process IDs to be killed: [2913619] (in reverse order)
[2026-03-24 14:01:41] 2026-03-24 13:00:44,557 | WARNING  | found no corresponding commands to process id(s)
[2026-03-24 14:01:41] 2026-03-24 13:00:44,557 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-24 14:01:41] 2026-03-24 13:00:44,559 | INFO     | did not find any defunct processes belonging to 2913619
[2026-03-24 14:01:41] 2026-03-24 13:00:44,559 | INFO     | did not find any defunct processes belonging to 2913619
[2026-03-24 14:01:41] 2026-03-24 13:00:44,559 | INFO     | ready for new job
[2026-03-24 14:01:41] 2026-03-24 13:00:44,560 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-24 14:01:41] 2026-03-24 13:00:44,560 | INFO     | **************************************
[2026-03-24 14:01:41] 2026-03-24 13:00:44,560 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-24 14:01:41] 2026-03-24 13:00:44,560 | INFO     | **************************************
[2026-03-24 14:01:41] 2026-03-24 13:00:44,560 | INFO     | 
[2026-03-24 14:01:41] 2026-03-24 13:00:44,560 | INFO     | architecture information:
[2026-03-24 14:01:41] 2026-03-24 13:00:44,561 | INFO     | executing command: cat /etc/os-release
[2026-03-24 14:01:41] 2026-03-24 13:00:44,570 | INFO     | cat /etc/os-release:
[2026-03-24 14:01:41] NAME="CentOS Linux"
[2026-03-24 14:01:41] VERSION="7 (Core)"
[2026-03-24 14:01:41] ID="centos"
[2026-03-24 14:01:41] ID_LIKE="rhel fedora"
[2026-03-24 14:01:41] VERSION_ID="7"
[2026-03-24 14:01:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-24 14:01:41] ANSI_COLOR="0;31"
[2026-03-24 14:01:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-24 14:01:41] HOME_URL="https://www.centos.org/"
[2026-03-24 14:01:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-24 14:01:41] 
[2026-03-24 14:01:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-24 14:01:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-24 14:01:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-24 14:01:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-24 14:01:41] 
[2026-03-24 14:01:41] 2026-03-24 13:00:44,571 | INFO     | **************************************
[2026-03-24 14:01:41] 2026-03-24 13:00:45,073 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-24 14:01:41] 2026-03-24 13:00:45,083 | INFO     | sufficient remaining disk space (182353657856 B)
[2026-03-24 14:01:41] 2026-03-24 13:00:45,083 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-24 14:01:41] 2026-03-24 13:00:45,083 | INFO     | current server update state: UPDATING_FINAL
[2026-03-24 14:01:41] 2026-03-24 13:00:45,083 | INFO     | update_server=False
[2026-03-24 14:01:41] 2026-03-24 13:00:45,083 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-24 14:01:41] 2026-03-24 13:00:45,083 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-24 14:01:41] 2026-03-24 13:00:45,084 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-24 14:01:41] 2026-03-24 13:00:45,555 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-24 14:01:41] 2026-03-24 13:00:45,741 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-24 14:01:41] 2026-03-24 13:00:45,741 | INFO     | aborting loop
[2026-03-24 14:01:41] 2026-03-24 13:00:45,884 | INFO     | all payload control threads have been joined
[2026-03-24 14:01:41] 2026-03-24 13:00:45,919 | INFO     | all data control threads have been joined
[2026-03-24 14:01:41] 2026-03-24 13:00:45,953 | INFO     | all job control threads have been joined
[2026-03-24 14:01:41] 2026-03-24 13:00:46,085 | INFO     | [job] queue monitor thread has finished
[2026-03-24 14:01:41] 2026-03-24 13:00:46,088 | INFO     | [job] retrieve thread has finished
[2026-03-24 14:01:41] 2026-03-24 13:00:46,120 | INFO     | [data] copytool_in thread has finished
[2026-03-24 14:01:41] 2026-03-24 13:00:46,195 | INFO     | [payload] validate_pre thread has finished
[2026-03-24 14:01:41] 2026-03-24 13:00:46,302 | INFO     | [payload] failed_post thread has finished
[2026-03-24 14:01:41] 2026-03-24 13:00:46,746 | INFO     | [job] job monitor thread has finished
[2026-03-24 14:01:41] 2026-03-24 13:00:46,889 | INFO     | [payload] control thread has finished
[2026-03-24 14:01:41] 2026-03-24 13:00:46,925 | INFO     | [data] control thread has finished
[2026-03-24 14:01:41] 2026-03-24 13:00:46,938 | INFO     | [payload] execute_payloads thread has finished
[2026-03-24 14:01:41] 2026-03-24 13:00:46,958 | INFO     | [job] control thread has finished
[2026-03-24 14:01:41] 2026-03-24 13:00:47,228 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-24 14:01:41] 2026-03-24 13:00:47,264 | INFO     | [payload] validate_post thread has finished
[2026-03-24 14:01:41] 2026-03-24 13:00:47,561 | INFO     | [data] copytool_out thread has finished
[2026-03-24 14:01:41] 2026-03-24 13:00:47,578 | INFO     | [job] validate thread has finished
[2026-03-24 14:01:41] 2026-03-24 13:00:47,589 | INFO     | [job] create_data_payload thread has finished
[2026-03-24 14:01:41] 2026-03-24 13:00:49,089 | INFO     | [data] queue_monitor thread has finished
[2026-03-24 14:01:41] 2026-03-24 13:01:15,871 | INFO     | PID=2909204 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-24 14:01:41] 2026-03-24 13:01:15,871 | INFO     | found 0 job(s) in 20 queues
[2026-03-24 14:01:41] 2026-03-24 13:01:15,871 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-24 14:01:41] 2026-03-24 13:01:15,871 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-24 14:01:41] 2026-03-24 13:01:35,064 | INFO     | [monitor] cgroup control has ended
[2026-03-24 14:01:41] 2026-03-24 13:01:36,742 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140180805113664)>', '<ExcThread(monitor, started 140179931125504)>']
[2026-03-24 14:01:41] 2026-03-24 13:01:36,970 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-24 14:01:41] 2026-03-24 13:01:36,970 | INFO     | [monitor] control thread has ended
[2026-03-24 14:01:41] 2026-03-24 13:01:41,767 | INFO     | all workflow threads have been joined
[2026-03-24 14:01:41] 2026-03-24 13:01:41,767 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-24 14:01:41] 2026-03-24 13:01:41,767 | INFO     | traces error code: 0
[2026-03-24 14:01:41] 2026-03-24 13:01:41,767 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-24 14:01:41] 2026-03-24 13:01:41,810 [wrapper] ==== pilot stdout END ====
[2026-03-24 14:01:41] 2026-03-24 13:01:41,812 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-24 14:01:41] 2026-03-24 13:01:41,815 [wrapper] pilotpid: 2909204
[2026-03-24 14:01:41] 2026-03-24 13:01:41,817 [wrapper] Pilot exit status: 0
[2026-03-24 14:01:41] 2026-03-24 13:01:41,825 [wrapper] pandaids: 7062824564
[2026-03-24 14:01:41] 2026-03-24 13:01:41,840 [wrapper] cleanup supervisor_pilot 2929637 2909205
[2026-03-24 14:01:41] 2026-03-24 13:01:41,843 [wrapper] Test setup, not cleaning
[2026-03-24 14:01:41] 2026-03-24 13:01:41,845 [wrapper] apfmon messages muted
[2026-03-24 14:01:41] 2026-03-24 13:01:41,848 [wrapper] ==== wrapper stdout END ====
[2026-03-24 14:01:41] 2026-03-24 13:01:41,850 [wrapper] ==== wrapper stderr END ====
[2026-03-24 14:01:41]  *** Error codes and diagnostics ***
[2026-03-24 14:01:41]     "exeErrorCode": 0,
[2026-03-24 14:01:41]     "exeErrorDiag": "",
[2026-03-24 14:01:41]     "pilotErrorCode": 0,
[2026-03-24 14:01:41]     "pilotErrorDiag": "",
[2026-03-24 14:01:41]  *** Listing of results directory ***
[2026-03-24 14:01:41] total 482060
[2026-03-24 14:01:41] -rw-r--r-- 1 boinc boinc    585013 Mar 23 06:30 pilot3.tar.gz
[2026-03-24 14:01:41] -rwx------ 1 boinc boinc     36322 Mar 23 06:42 runpilot2-wrapper.sh
[2026-03-24 14:01:41] -rw-r--r-- 1 boinc boinc      5111 Mar 23 06:47 queuedata.json
[2026-03-24 14:01:41] -rw-r--r-- 1 boinc boinc       100 Mar 24 08:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-24 14:01:41] -rwxr-xr-x 1 boinc boinc      7986 Mar 24 08:16 run_atlas
[2026-03-24 14:01:41] -rw-r--r-- 1 boinc boinc       105 Mar 24 08:16 job.xml
[2026-03-24 14:01:41] -rw-r--r-- 2 boinc boinc 241796617 Mar 24 08:16 EVNT.49128472._000006.pool.root.1
[2026-03-24 14:01:41] -rw-r--r-- 2 boinc boinc    597540 Mar 24 08:16 input.tar.gz
[2026-03-24 14:01:41] -rw-r--r-- 2 boinc boinc     15845 Mar 24 08:16 start_atlas.sh
[2026-03-24 14:01:41] drwxrwx--x 2 boinc boinc      4096 Mar 24 08:16 shared
[2026-03-24 14:01:41] -rw-r--r-- 1 boinc boinc         0 Mar 24 08:16 boinc_setup_complete
[2026-03-24 14:01:41] -rw-r--r-- 1 boinc boinc      6207 Mar 24 08:16 init_data.xml
[2026-03-24 14:01:41] -rw-r--r-- 1 boinc boinc         0 Mar 24 08:16 boinc_lockfile
[2026-03-24 14:01:41] -rw-r--r-- 1 boinc boinc      2628 Mar 24 08:16 pandaJob.out
[2026-03-24 14:01:41] -rw------- 1 boinc boinc   1010893 Mar 24 08:17 agis_schedconf.cvmfs.json
[2026-03-24 14:01:41] -rw------- 1 boinc boinc       421 Mar 24 08:17 workernode_map.json
[2026-03-24 14:01:41] drwx------ 5 boinc boinc      4096 Mar 24 08:17 pilot3
[2026-03-24 14:01:41] -rw-r--r-- 1 boinc boinc       530 Mar 24 14:00 boinc_task_state.xml
[2026-03-24 14:01:41] -rw------- 1 boinc boinc 241205065 Mar 24 14:00 HITS.49178289._000143.pool.root.1
[2026-03-24 14:01:41] -rw------- 1 boinc boinc      1017 Mar 24 14:00 memory_monitor_summary.json
[2026-03-24 14:01:41] -rw------- 1 boinc boinc   1511579 Mar 24 14:00 agis_ddmendpoints.agis.ALL.json
[2026-03-24 14:01:41] -rw------- 1 boinc boinc    462412 Mar 24 14:00 log.49178289._000143.job.log.tgz.1
[2026-03-24 14:01:41] -rw------- 1 boinc boinc      6298 Mar 24 14:00 heartbeat.json
[2026-03-24 14:01:41] -rw------- 1 boinc boinc        95 Mar 24 14:01 pilot_heartbeat.json
[2026-03-24 14:01:41] -rw-r--r-- 1 boinc boinc      8192 Mar 24 14:01 boinc_mmap_file
[2026-03-24 14:01:41] -rw-r--r-- 1 boinc boinc        28 Mar 24 14:01 wrapper_checkpoint.txt
[2026-03-24 14:01:41] -rw------- 1 boinc boinc      4748 Mar 24 14:01 pilotlog.txt
[2026-03-24 14:01:41] -rw------- 1 boinc boinc   2883814 Mar 24 14:01 log.49178289._000143.job.log.1
[2026-03-24 14:01:41] -rw------- 1 boinc boinc       357 Mar 24 14:01 output.list
[2026-03-24 14:01:41] -rw-r--r-- 1 boinc boinc       620 Mar 24 14:01 runtime_log
[2026-03-24 14:01:41] -rw------- 1 boinc boinc   3368960 Mar 24 14:01 result.tar.gz
[2026-03-24 14:01:41] -rw-r--r-- 1 boinc boinc      8912 Mar 24 14:01 runtime_log.err
[2026-03-24 14:01:41] -rw------- 1 boinc boinc       664 Mar 24 14:01 nZiMDmXEnO9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmrU9LDmv0w1Mn.diag
[2026-03-24 14:01:41] -rw-r--r-- 1 boinc boinc     10280 Mar 24 14:01 stderr.txt
[2026-03-24 14:01:41] HITS file was successfully produced:
[2026-03-24 14:01:41] -rw------- 1 boinc boinc 241205065 Mar 24 14:00 shared/HITS.pool.root.1
[2026-03-24 14:01:41]  *** Contents of shared directory: ***
[2026-03-24 14:01:41] total 475584
[2026-03-24 14:01:41] -rw-r--r-- 2 boinc boinc 241796617 Mar 24 08:16 ATLAS.root_0
[2026-03-24 14:01:41] -rw-r--r-- 2 boinc boinc    597540 Mar 24 08:16 input.tar.gz
[2026-03-24 14:01:41] -rw-r--r-- 2 boinc boinc     15845 Mar 24 08:16 start_atlas.sh
[2026-03-24 14:01:41] -rw------- 1 boinc boinc 241205065 Mar 24 14:00 HITS.pool.root.1
[2026-03-24 14:01:41] -rw------- 1 boinc boinc   3368960 Mar 24 14:01 result.tar.gz
14:01:43 (2905177): run_atlas exited; CPU time 40658.718434
14:01:43 (2905177): called boinc_finish(0)

</stderr_txt>
]]>

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