Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:34:41 (921873): wrapper (7.7.26015): starting
10:34:41 (921873): wrapper: running run_atlas (--nthreads 3)
[2026-03-24 10:34:41] Arguments: --nthreads 3
[2026-03-24 10:34:41] Threads: 3
[2026-03-24 10:34:41] Checking for CVMFS
[2026-03-24 10:34:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-24 10:34:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-24 10:34:43] Running cvmfs_config stat atlas.cern.ch
[2026-03-24 10:34:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-24 10:34:43] 2.9.2.0 683861 2533 75084 157638 3 50 32982124 36864000 0 130560 0 844640 99.979 80936 13673 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-24 10:34:43] CVMFS is ok
[2026-03-24 10:34:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-24 10:34:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-24 10:34:43] Further information can be found at the LHC@home message board.
[2026-03-24 10:34:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-24 10:34:43] Checking for apptainer binary...
[2026-03-24 10:34:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-24 10:34:43] Running /usr/bin/apptainer --version
[2026-03-24 10:34:43] apptainer version 1.4.1-1.1
[2026-03-24 10:34:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-24 10:34:43] magicA246a
[2026-03-24 10:34:43] apptainer works
[2026-03-24 10:34:43] Set ATHENA_PROC_NUMBER=3
[2026-03-24 10:34:43] Set ATHENA_CORE_NUMBER=3
[2026-03-24 10:34:43] Starting ATLAS job with PandaID=7062843598
[2026-03-24 10:34:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-24 14:35:22]  *** The last 200 lines of the pilot log: ***
[2026-03-24 14:35:22] 2026-03-24 13:35:04,358 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-24 14:35:22] 2026-03-24 13:35:04,358 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-24 14:35:22] 2026-03-24 13:35:04,358 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-24 14:35:22] 2026-03-24 13:35:04,358 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-24 14:35:22] 2026-03-24 13:35:04,358 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-24 14:35:22] 2026-03-24 13:35:04,358 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-24 14:35:22] 2026-03-24 13:35:04,358 | INFO     | job 7062843598 has completed (purged errors)
[2026-03-24 14:35:22] 2026-03-24 13:35:04,359 | INFO     | overall cleanup function is called
[2026-03-24 14:35:22] 2026-03-24 13:35:05,365 | INFO     | --- collectZombieJob: --- 10, [930367]
[2026-03-24 14:35:22] 2026-03-24 13:35:05,366 | INFO     | zombie collector waiting for pid 930367
[2026-03-24 14:35:22] 2026-03-24 13:35:05,366 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-24 14:35:22] 2026-03-24 13:35:05,366 | INFO     | collected zombie processes
[2026-03-24 14:35:22] 2026-03-24 13:35:05,366 | INFO     | will attempt to kill all subprocesses of pid=930367
[2026-03-24 14:35:22] 2026-03-24 13:35:05,411 | INFO     | process IDs to be killed: [930367] (in reverse order)
[2026-03-24 14:35:22] 2026-03-24 13:35:05,438 | WARNING  | found no corresponding commands to process id(s)
[2026-03-24 14:35:22] 2026-03-24 13:35:05,438 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-24 14:35:22] 2026-03-24 13:35:05,439 | INFO     | did not find any defunct processes belonging to 930367
[2026-03-24 14:35:22] 2026-03-24 13:35:05,441 | INFO     | did not find any defunct processes belonging to 930367
[2026-03-24 14:35:22] 2026-03-24 13:35:05,441 | INFO     | ready for new job
[2026-03-24 14:35:22] 2026-03-24 13:35:05,441 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-24 14:35:22] 2026-03-24 13:35:05,442 | INFO     | **************************************
[2026-03-24 14:35:22] 2026-03-24 13:35:05,442 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-24 14:35:22] 2026-03-24 13:35:05,442 | INFO     | **************************************
[2026-03-24 14:35:22] 2026-03-24 13:35:05,442 | INFO     | 
[2026-03-24 14:35:22] 2026-03-24 13:35:05,442 | INFO     | architecture information:
[2026-03-24 14:35:22] 2026-03-24 13:35:05,442 | INFO     | executing command: cat /etc/os-release
[2026-03-24 14:35:22] 2026-03-24 13:35:05,452 | INFO     | cat /etc/os-release:
[2026-03-24 14:35:22] NAME="CentOS Linux"
[2026-03-24 14:35:22] VERSION="7 (Core)"
[2026-03-24 14:35:22] ID="centos"
[2026-03-24 14:35:22] ID_LIKE="rhel fedora"
[2026-03-24 14:35:22] VERSION_ID="7"
[2026-03-24 14:35:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-24 14:35:22] ANSI_COLOR="0;31"
[2026-03-24 14:35:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-24 14:35:22] HOME_URL="https://www.centos.org/"
[2026-03-24 14:35:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-24 14:35:22] 
[2026-03-24 14:35:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-24 14:35:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-24 14:35:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-24 14:35:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-24 14:35:22] 
[2026-03-24 14:35:22] 2026-03-24 13:35:05,452 | INFO     | **************************************
[2026-03-24 14:35:22] 2026-03-24 13:35:05,956 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-24 14:35:22] 2026-03-24 13:35:05,970 | INFO     | sufficient remaining disk space (270967767040 B)
[2026-03-24 14:35:22] 2026-03-24 13:35:05,970 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-24 14:35:22] 2026-03-24 13:35:05,970 | INFO     | current server update state: UPDATING_FINAL
[2026-03-24 14:35:22] 2026-03-24 13:35:05,970 | INFO     | update_server=False
[2026-03-24 14:35:22] 2026-03-24 13:35:05,971 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-24 14:35:22] 2026-03-24 13:35:05,971 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-24 14:35:22] 2026-03-24 13:35:05,971 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-24 14:35:22] 2026-03-24 13:35:05,971 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-24 14:35:22] 2026-03-24 13:35:05,971 | INFO     | found 0 job(s) in 20 queues
[2026-03-24 14:35:22] 2026-03-24 13:35:05,971 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-24 14:35:22] 2026-03-24 13:35:05,971 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-24 14:35:22] 2026-03-24 13:35:06,025 | INFO     | all data control threads have been joined
[2026-03-24 14:35:22] 2026-03-24 13:35:06,392 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-24 14:35:22] 2026-03-24 13:35:06,393 | INFO     | aborting loop
[2026-03-24 14:35:22] 2026-03-24 13:35:06,975 | INFO     | [job] retrieve thread has finished
[2026-03-24 14:35:22] 2026-03-24 13:35:06,976 | INFO     | [job] queue monitor thread has finished
[2026-03-24 14:35:22] 2026-03-24 13:35:07,029 | INFO     | all job control threads have been joined
[2026-03-24 14:35:22] 2026-03-24 13:35:07,030 | INFO     | [data] control thread has finished
[2026-03-24 14:35:22] 2026-03-24 13:35:07,166 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-24 14:35:22] 2026-03-24 13:35:07,398 | INFO     | [job] job monitor thread has finished
[2026-03-24 14:35:22] 2026-03-24 13:35:07,471 | INFO     | all payload control threads have been joined
[2026-03-24 14:35:22] 2026-03-24 13:35:07,613 | INFO     | [payload] execute_payloads thread has finished
[2026-03-24 14:35:22] 2026-03-24 13:35:07,880 | INFO     | [job] validate thread has finished
[2026-03-24 14:35:22] 2026-03-24 13:35:07,880 | INFO     | [job] create_data_payload thread has finished
[2026-03-24 14:35:22] 2026-03-24 13:35:07,900 | INFO     | [payload] failed_post thread has finished
[2026-03-24 14:35:22] 2026-03-24 13:35:07,977 | INFO     | [data] copytool_out thread has finished
[2026-03-24 14:35:22] 2026-03-24 13:35:08,035 | INFO     | [job] control thread has finished
[2026-03-24 14:35:22] 2026-03-24 13:35:08,052 | INFO     | [payload] validate_pre thread has finished
[2026-03-24 14:35:22] 2026-03-24 13:35:08,175 | INFO     | [data] copytool_in thread has finished
[2026-03-24 14:35:22] 2026-03-24 13:35:08,286 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-24 14:35:22] 2026-03-24 13:35:08,423 | INFO     | [payload] validate_post thread has finished
[2026-03-24 14:35:22] 2026-03-24 13:35:08,477 | INFO     | [payload] control thread has finished
[2026-03-24 14:35:22] 2026-03-24 13:35:12,293 | INFO     | [data] queue_monitor thread has finished
[2026-03-24 14:35:22] 2026-03-24 13:35:15,454 | INFO     | [monitor] cgroup control has ended
[2026-03-24 14:35:22] 2026-03-24 13:35:17,033 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140537381336896)>', '<ExcThread(monitor, started 140536732169984)>']
[2026-03-24 14:35:22] 2026-03-24 13:35:18,030 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-24 14:35:22] 2026-03-24 13:35:18,030 | INFO     | [monitor] control thread has ended
[2026-03-24 14:35:22] 2026-03-24 13:35:22,059 | INFO     | all workflow threads have been joined
[2026-03-24 14:35:22] 2026-03-24 13:35:22,059 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-24 14:35:22] 2026-03-24 13:35:22,059 | INFO     | traces error code: 0
[2026-03-24 14:35:22] 2026-03-24 13:35:22,060 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-24 14:35:22] 2026-03-24 13:35:22,113 [wrapper] ==== pilot stdout END ====
[2026-03-24 14:35:22] 2026-03-24 13:35:22,116 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-24 14:35:22] 2026-03-24 13:35:22,119 [wrapper] pilotpid: 925916
[2026-03-24 14:35:22] 2026-03-24 13:35:22,121 [wrapper] Pilot exit status: 0
[2026-03-24 14:35:22] 2026-03-24 13:35:22,129 [wrapper] pandaids: 7062843598
[2026-03-24 14:35:22] 2026-03-24 13:35:22,147 [wrapper] cleanup supervisor_pilot  938633 925917
[2026-03-24 14:35:22] 2026-03-24 13:35:22,149 [wrapper] Test setup, not cleaning
[2026-03-24 14:35:22] 2026-03-24 13:35:22,152 [wrapper] apfmon messages muted
[2026-03-24 14:35:22] 2026-03-24 13:35:22,155 [wrapper] ==== wrapper stdout END ====
[2026-03-24 14:35:22] 2026-03-24 13:35:22,157 [wrapper] ==== wrapper stderr END ====
[2026-03-24 14:35:22]  *** Error codes and diagnostics ***
[2026-03-24 14:35:22]     "exeErrorCode": 0,
[2026-03-24 14:35:22]     "exeErrorDiag": "",
[2026-03-24 14:35:22]     "pilotErrorCode": 0,
[2026-03-24 14:35:22]     "pilotErrorDiag": "",
[2026-03-24 14:35:22]  *** Listing of results directory ***
[2026-03-24 14:35:22] total 495944
[2026-03-24 14:35:22] -rw-r--r-- 1 boinc boinc    585013 Mar 23 06:30 pilot3.tar.gz
[2026-03-24 14:35:22] -rw-r--r-- 1 boinc boinc      5111 Mar 23 06:39 queuedata.json
[2026-03-24 14:35:22] -rwx------ 1 boinc boinc     36322 Mar 23 06:39 runpilot2-wrapper.sh
[2026-03-24 14:35:22] -rw-r--r-- 1 boinc boinc       100 Mar 24 10:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-24 14:35:22] -rwxr-xr-x 1 boinc boinc      7986 Mar 24 10:34 run_atlas
[2026-03-24 14:35:22] -rw-r--r-- 1 boinc boinc       105 Mar 24 10:34 job.xml
[2026-03-24 14:35:22] -rw-r--r-- 2 boinc boinc 245905900 Mar 24 10:34 EVNT.49133402._000012.pool.root.1
[2026-03-24 14:35:22] drwxrwx--x 2 boinc boinc      4096 Mar 24 10:34 shared
[2026-03-24 14:35:22] -rw-r--r-- 2 boinc boinc    597533 Mar 24 10:34 input.tar.gz
[2026-03-24 14:35:22] -rw-r--r-- 2 boinc boinc     15845 Mar 24 10:34 start_atlas.sh
[2026-03-24 14:35:22] -rw-r--r-- 1 boinc boinc         0 Mar 24 10:34 boinc_setup_complete
[2026-03-24 14:35:22] -rw-r--r-- 1 boinc boinc      6448 Mar 24 10:34 init_data.xml
[2026-03-24 14:35:22] -rw-r--r-- 1 boinc boinc         0 Mar 24 10:34 boinc_lockfile
[2026-03-24 14:35:22] -rw-r--r-- 1 boinc boinc      2573 Mar 24 10:34 pandaJob.out
[2026-03-24 14:35:22] -rw------- 1 boinc boinc   1010534 Mar 24 10:34 agis_schedconf.cvmfs.json
[2026-03-24 14:35:22] -rw------- 1 boinc boinc       428 Mar 24 10:34 workernode_map.json
[2026-03-24 14:35:22] drwx------ 5 boinc boinc      4096 Mar 24 10:34 pilot3
[2026-03-24 14:35:22] -rw------- 1 boinc boinc        95 Mar 24 14:34 pilot_heartbeat.json
[2026-03-24 14:35:22] -rw------- 1 boinc boinc 253188337 Mar 24 14:34 HITS.49176300._001504.pool.root.1
[2026-03-24 14:35:22] -rw-r--r-- 1 boinc boinc       530 Mar 24 14:34 boinc_task_state.xml
[2026-03-24 14:35:22] -rw------- 1 boinc boinc      1018 Mar 24 14:34 memory_monitor_summary.json
[2026-03-24 14:35:22] -rw------- 1 boinc boinc   1511579 Mar 24 14:34 agis_ddmendpoints.agis.ALL.json
[2026-03-24 14:35:22] -rw------- 1 boinc boinc    389641 Mar 24 14:35 log.49176300._001504.job.log.tgz.1
[2026-03-24 14:35:22] -rw------- 1 boinc boinc      6310 Mar 24 14:35 heartbeat.json
[2026-03-24 14:35:22] -rw-r--r-- 1 boinc boinc      8192 Mar 24 14:35 boinc_mmap_file
[2026-03-24 14:35:22] -rw-r--r-- 1 boinc boinc        28 Mar 24 14:35 wrapper_checkpoint.txt
[2026-03-24 14:35:22] -rw------- 1 boinc boinc      4552 Mar 24 14:35 pilotlog.txt
[2026-03-24 14:35:22] -rw------- 1 boinc boinc   2022661 Mar 24 14:35 log.49176300._001504.job.log.1
[2026-03-24 14:35:22] -rw------- 1 boinc boinc       357 Mar 24 14:35 output.list
[2026-03-24 14:35:22] -rw-r--r-- 1 boinc boinc       620 Mar 24 14:35 runtime_log
[2026-03-24 14:35:22] -rw------- 1 boinc boinc   2426880 Mar 24 14:35 result.tar.gz
[2026-03-24 14:35:22] -rw-r--r-- 1 boinc boinc      8917 Mar 24 14:35 runtime_log.err
[2026-03-24 14:35:22] -rw------- 1 boinc boinc       664 Mar 24 14:35 QoANDmTBnO9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmxH9LDmkM1R3m.diag
[2026-03-24 14:35:22] -rw-r--r-- 1 boinc boinc     11328 Mar 24 14:35 stderr.txt
[2026-03-24 14:35:22] HITS file was successfully produced:
[2026-03-24 14:35:22] -rw------- 1 boinc boinc 253188337 Mar 24 14:34 shared/HITS.pool.root.1
[2026-03-24 14:35:22]  *** Contents of shared directory: ***
[2026-03-24 14:35:22] total 490380
[2026-03-24 14:35:22] -rw-r--r-- 2 boinc boinc 245905900 Mar 24 10:34 ATLAS.root_0
[2026-03-24 14:35:22] -rw-r--r-- 2 boinc boinc    597533 Mar 24 10:34 input.tar.gz
[2026-03-24 14:35:22] -rw-r--r-- 2 boinc boinc     15845 Mar 24 10:34 start_atlas.sh
[2026-03-24 14:35:22] -rw------- 1 boinc boinc 253188337 Mar 24 14:34 HITS.pool.root.1
[2026-03-24 14:35:22] -rw------- 1 boinc boinc   2426880 Mar 24 14:35 result.tar.gz
14:35:23 (921873): run_atlas exited; CPU time 41965.166499
14:35:23 (921873): called boinc_finish(0)

</stderr_txt>
]]>

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