Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:08:44 (3980810): wrapper (7.7.26015): starting
14:08:44 (3980810): wrapper: running run_atlas (--nthreads 4)
[2026-03-25 14:08:44] Arguments: --nthreads 4
[2026-03-25 14:08:44] Threads: 4
[2026-03-25 14:08:44] Checking for CVMFS
[2026-03-25 14:08:44] No cvmfs_config command found, will try listing directly
[2026-03-25 14:08:44] CVMFS is ok
[2026-03-25 14:08:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-25 14:08:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-25 14:08:44] Further information can be found at the LHC@home message board.
[2026-03-25 14:08:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-25 14:08:44] Checking for apptainer binary...
[2026-03-25 14:08:44] which: no apptainer in ((null))
[2026-03-25 14:08:44] apptainer is not installed, using version from CVMFS
[2026-03-25 14:08:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-25 14:08:45] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut02.grid.cesnet.cz
[2026-03-25 14:08:45] apptainer works
[2026-03-25 14:08:45] Set ATHENA_PROC_NUMBER=4
[2026-03-25 14:08:45] Set ATHENA_CORE_NUMBER=4
[2026-03-25 14:08:45] Starting ATLAS job with PandaID=7062659585
[2026-03-25 14:08:45] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:43:03 (4190557): wrapper (7.7.26015): starting
17:43:03 (4190557): wrapper: running run_atlas (--nthreads 4)
[2026-03-25 17:43:03] Arguments: --nthreads 4
[2026-03-25 17:43:03] Threads: 4
[2026-03-25 17:43:03] This job has been restarted, cleaning up previous attempt
[2026-03-25 17:43:03] Checking for CVMFS
[2026-03-25 17:43:03] No cvmfs_config command found, will try listing directly
[2026-03-25 17:43:03] CVMFS is ok
[2026-03-25 17:43:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-25 17:43:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-25 17:43:03] Further information can be found at the LHC@home message board.
[2026-03-25 17:43:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-25 17:43:03] Checking for apptainer binary...
[2026-03-25 17:43:03] which: no apptainer in ((null))
[2026-03-25 17:43:03] apptainer is not installed, using version from CVMFS
[2026-03-25 17:43:03] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-25 17:43:04] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut02.grid.cesnet.cz
[2026-03-25 17:43:04] apptainer works
[2026-03-25 17:43:04] Set ATHENA_PROC_NUMBER=4
[2026-03-25 17:43:04] Set ATHENA_CORE_NUMBER=4
[2026-03-25 17:43:04] Starting ATLAS job with PandaID=7062659585
[2026-03-25 17:43:04] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-25 22:44:47]  *** The last 200 lines of the pilot log: ***
[2026-03-25 22:44:47] 2026-03-25 21:43:49,882 | INFO     | total number of processed events: 400 (read)
[2026-03-25 22:44:47] 2026-03-25 21:43:49,896 | INFO     | using path: /var/lib/boinc/var/slot40/slots/0/PanDA_Pilot-7062659585/memory_monitor_summary.json (trf name=prmon)
[2026-03-25 22:44:47] 2026-03-25 21:43:49,896 | INFO     | extracted standard info from prmon json
[2026-03-25 22:44:47] 2026-03-25 21:43:49,896 | INFO     | extracted standard memory fields from prmon json
[2026-03-25 22:44:47] 2026-03-25 21:43:49,896 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-25 22:44:47] 2026-03-25 21:43:49,897 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-25 22:44:47] 2026-03-25 21:43:49,897 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-25 22:44:47] 2026-03-25 21:43:49,902 | INFO     | fitting pss+swap vs Time
[2026-03-25 22:44:47] 2026-03-25 21:43:49,903 | INFO     | sum of square deviations: 8041713570.0
[2026-03-25 22:44:47] 2026-03-25 21:43:49,906 | INFO     | sum of deviations: 15194277750.499996
[2026-03-25 22:44:47] 2026-03-25 21:43:49,906 | INFO     | mean x: 1774466012.5
[2026-03-25 22:44:47] 2026-03-25 21:43:49,906 | INFO     | mean y: 2333182.118243243
[2026-03-25 22:44:47] 2026-03-25 21:43:49,906 | INFO     | intersect: -3350401184.5134196
[2026-03-25 22:44:47] 2026-03-25 21:43:49,907 | INFO     | chi2: 1.8794932095022894
[2026-03-25 22:44:47] 2026-03-25 21:43:49,907 | INFO     | sum of square deviations: 7641036290.0
[2026-03-25 22:44:47] 2026-03-25 21:43:49,910 | INFO     | sum of deviations: 33116273285.999996
[2026-03-25 22:44:47] 2026-03-25 21:43:49,910 | INFO     | mean x: 1774465860.0
[2026-03-25 22:44:47] 2026-03-25 21:43:49,910 | INFO     | mean y: 2339908.16838488
[2026-03-25 22:44:47] 2026-03-25 21:43:49,910 | INFO     | intersect: -7688200239.290725
[2026-03-25 22:44:47] 2026-03-25 21:43:49,910 | INFO     | chi2: 1.1144493917179128
[2026-03-25 22:44:47] 2026-03-25 21:43:49,911 | INFO     | current chi2=1.1144493917179128 (change=40.70479286205927 %)
[2026-03-25 22:44:47] 2026-03-25 21:43:49,911 | INFO     | sum of square deviations: 7253894147.5
[2026-03-25 22:44:47] 2026-03-25 21:43:49,913 | INFO     | sum of deviations: 32467056904.5
[2026-03-25 22:44:47] 2026-03-25 21:43:49,914 | INFO     | mean x: 1774465707.5
[2026-03-25 22:44:47] 2026-03-25 21:43:49,914 | INFO     | mean y: 2339652.409090909
[2026-03-25 22:44:47] 2026-03-25 21:43:49,914 | INFO     | intersect: -7939832914.355173
[2026-03-25 22:44:47] 2026-03-25 21:43:49,914 | INFO     | chi2: 1.1146906081310366
[2026-03-25 22:44:47] 2026-03-25 21:43:49,914 | INFO     | current chi2=1.1146906081310366 (change=-0.021644447465843986 %)
[2026-03-25 22:44:47] 2026-03-25 21:43:49,914 | INFO     | right removable region: 285
[2026-03-25 22:44:47] 2026-03-25 21:43:49,915 | INFO     | sum of square deviations: 7641036290.0
[2026-03-25 22:44:47] 2026-03-25 21:43:49,917 | INFO     | sum of deviations: -17038857818.0
[2026-03-25 22:44:47] 2026-03-25 21:43:49,917 | INFO     | mean x: 1774466165.0
[2026-03-25 22:44:47] 2026-03-25 21:43:49,917 | INFO     | mean y: 2345339.4295532648
[2026-03-25 22:44:47] 2026-03-25 21:43:49,918 | INFO     | intersect: 3959253216.945565
[2026-03-25 22:44:47] 2026-03-25 21:43:49,918 | INFO     | chi2: 0.779833765496813
[2026-03-25 22:44:47] 2026-03-25 21:43:49,918 | INFO     | current chi2=0.779833765496813 (change=58.50829566426996 %)
[2026-03-25 22:44:47] 2026-03-25 21:43:49,919 | INFO     | sum of square deviations: 7253894147.5
[2026-03-25 22:44:47] 2026-03-25 21:43:49,921 | INFO     | sum of deviations: -17787141524.000004
[2026-03-25 22:44:47] 2026-03-25 21:43:49,921 | INFO     | mean x: 1774466317.5
[2026-03-25 22:44:47] 2026-03-25 21:43:49,921 | INFO     | mean y: 2345632.4475524477
[2026-03-25 22:44:47] 2026-03-25 21:43:49,921 | INFO     | intersect: 4353482122.331605
[2026-03-25 22:44:47] 2026-03-25 21:43:49,922 | INFO     | chi2: 0.779314904439726
[2026-03-25 22:44:47] 2026-03-25 21:43:49,922 | INFO     | current chi2=0.779314904439726 (change=0.06653482832415453 %)
[2026-03-25 22:44:47] 2026-03-25 21:43:49,922 | INFO     | left removable region: 20
[2026-03-25 22:44:47] 2026-03-25 21:43:49,922 | INFO     | sum of square deviations: 5770452380.0
[2026-03-25 22:44:47] 2026-03-25 21:43:49,925 | INFO     | sum of deviations: 514692014.00000006
[2026-03-25 22:44:47] 2026-03-25 21:43:49,925 | INFO     | mean x: 1774466287.0
[2026-03-25 22:44:47] 2026-03-25 21:43:49,925 | INFO     | mean y: 2352543.426415094
[2026-03-25 22:44:47] 2026-03-25 21:43:49,925 | INFO     | intersect: -155919905.05554122
[2026-03-25 22:44:47] 2026-03-25 21:43:49,925 | INFO     | chi2: 0.0033517057003781296
[2026-03-25 22:44:47] 2026-03-25 21:43:49,926 | INFO     | current memory leak: 0.09 B/s (using 265 data points, chi2=0.00)
[2026-03-25 22:44:47] 2026-03-25 21:43:49,926 | INFO     | could have reported an average CPU frequency of 2531 MHz (13 samples)
[2026-03-25 22:44:47] 2026-03-25 21:43:49,926 | INFO     | ..............................
[2026-03-25 22:44:47] 2026-03-25 21:43:49,926 | INFO     | . Timing measurements:
[2026-03-25 22:44:47] 2026-03-25 21:43:49,927 | INFO     | . get job = 0 s
[2026-03-25 22:44:47] 2026-03-25 21:43:49,927 | INFO     | . initial setup = 1 s
[2026-03-25 22:44:47] 2026-03-25 21:43:49,927 | INFO     | . payload setup = 7 s
[2026-03-25 22:44:47] 2026-03-25 21:43:49,927 | INFO     | . stage-in = 0 s
[2026-03-25 22:44:47] 2026-03-25 21:43:49,927 | INFO     | . payload execution = 18010 s
[2026-03-25 22:44:47] 2026-03-25 21:43:49,927 | INFO     | . stage-out = 1 s
[2026-03-25 22:44:47] 2026-03-25 21:43:49,927 | INFO     | . log creation = 0 s
[2026-03-25 22:44:47] 2026-03-25 21:43:49,927 | INFO     | ..............................
[2026-03-25 22:44:47] 2026-03-25 21:43:50,027 | INFO     | 
[2026-03-25 22:44:47] 2026-03-25 21:43:50,028 | INFO     | job summary report
[2026-03-25 22:44:47] 2026-03-25 21:43:50,028 | INFO     | --------------------------------------------------
[2026-03-25 22:44:47] 2026-03-25 21:43:50,028 | INFO     | PanDA job id: 7062659585
[2026-03-25 22:44:47] 2026-03-25 21:43:50,028 | INFO     | task id: 49285707
[2026-03-25 22:44:47] 2026-03-25 21:43:50,028 | INFO     | errors: (none)
[2026-03-25 22:44:47] 2026-03-25 21:43:50,028 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-25 22:44:47] 2026-03-25 21:43:50,028 | INFO     | pilot state: finished 
[2026-03-25 22:44:47] 2026-03-25 21:43:50,028 | INFO     | transexitcode: 0
[2026-03-25 22:44:47] 2026-03-25 21:43:50,028 | INFO     | exeerrorcode: 0
[2026-03-25 22:44:47] 2026-03-25 21:43:50,028 | INFO     | exeerrordiag: 
[2026-03-25 22:44:47] 2026-03-25 21:43:50,029 | INFO     | exitcode: 0
[2026-03-25 22:44:47] 2026-03-25 21:43:50,029 | INFO     | exitmsg: OK
[2026-03-25 22:44:47] 2026-03-25 21:43:50,029 | INFO     | cpuconsumptiontime: 70383 s
[2026-03-25 22:44:47] 2026-03-25 21:43:50,029 | INFO     | nevents: 400
[2026-03-25 22:44:47] 2026-03-25 21:43:50,029 | INFO     | neventsw: 0
[2026-03-25 22:44:47] 2026-03-25 21:43:50,029 | INFO     | pid: 59503
[2026-03-25 22:44:47] 2026-03-25 21:43:50,029 | INFO     | pgrp: 59503
[2026-03-25 22:44:47] 2026-03-25 21:43:50,029 | INFO     | corecount: 4
[2026-03-25 22:44:47] 2026-03-25 21:43:50,029 | INFO     | event service: False
[2026-03-25 22:44:47] 2026-03-25 21:43:50,029 | INFO     | sizes: {0: 2279998, 1: 2280260, 11: 2280288, 18021: 2312605, 18023: 2321625, 18025: 2321681, 18027: 2322003}
[2026-03-25 22:44:47] 2026-03-25 21:43:50,029 | INFO     | --------------------------------------------------
[2026-03-25 22:44:47] 2026-03-25 21:43:50,029 | INFO     | 
[2026-03-25 22:44:47] 2026-03-25 21:43:50,029 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot40/slots/0
[2026-03-25 22:44:47] 2026-03-25 21:43:50,051 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-25 22:44:47] 2026-03-25 21:43:50,052 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-25 22:44:47] 2026-03-25 21:43:50,052 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-25 22:44:47] 2026-03-25 21:43:50,052 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-25 22:44:47] 2026-03-25 21:43:50,052 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-25 22:44:47] 2026-03-25 21:43:50,052 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-25 22:44:47] 2026-03-25 21:43:50,052 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-25 22:44:47] 2026-03-25 21:43:50,052 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-25 22:44:47] 2026-03-25 21:43:50,052 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-25 22:44:47] 2026-03-25 21:43:50,052 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-25 22:44:47] 2026-03-25 21:43:50,052 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-25 22:44:47] 2026-03-25 21:43:50,052 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-25 22:44:47] 2026-03-25 21:43:50,052 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-25 22:44:47] 2026-03-25 21:43:50,053 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-25 22:44:47] 2026-03-25 21:43:50,053 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-25 22:44:47] 2026-03-25 21:43:50,053 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-25 22:44:47] 2026-03-25 21:43:50,053 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-25 22:44:47] 2026-03-25 21:43:50,053 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-25 22:44:47] 2026-03-25 21:43:50,053 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-25 22:44:47] 2026-03-25 21:43:50,053 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-25 22:44:47] 2026-03-25 21:43:50,053 | INFO     | job 7062659585 has completed (purged errors)
[2026-03-25 22:44:47] 2026-03-25 21:43:50,053 | INFO     | overall cleanup function is called
[2026-03-25 22:44:47] 2026-03-25 21:43:51,060 | INFO     | --- collectZombieJob: --- 10, [59503]
[2026-03-25 22:44:47] 2026-03-25 21:43:51,061 | INFO     | zombie collector waiting for pid 59503
[2026-03-25 22:44:47] 2026-03-25 21:43:51,061 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-25 22:44:47] 2026-03-25 21:43:51,061 | INFO     | collected zombie processes
[2026-03-25 22:44:47] 2026-03-25 21:43:51,061 | INFO     | will attempt to kill all subprocesses of pid=59503
[2026-03-25 22:44:47] 2026-03-25 21:43:51,496 | INFO     | process IDs to be killed: [59503] (in reverse order)
[2026-03-25 22:44:47] 2026-03-25 21:43:51,627 | WARNING  | found no corresponding commands to process id(s)
[2026-03-25 22:44:47] 2026-03-25 21:43:51,627 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-25 22:44:47] 2026-03-25 21:43:51,640 | INFO     | did not find any defunct processes belonging to 59503
[2026-03-25 22:44:47] 2026-03-25 21:43:51,652 | INFO     | did not find any defunct processes belonging to 59503
[2026-03-25 22:44:47] 2026-03-25 21:43:51,653 | INFO     | ready for new job
[2026-03-25 22:44:47] 2026-03-25 21:43:51,653 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-25 22:44:47] 2026-03-25 21:43:51,655 | INFO     | **************************************
[2026-03-25 22:44:47] 2026-03-25 21:43:51,656 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-25 22:44:47] 2026-03-25 21:43:51,656 | INFO     | **************************************
[2026-03-25 22:44:47] 2026-03-25 21:43:51,656 | INFO     | 
[2026-03-25 22:44:47] 2026-03-25 21:43:51,660 | INFO     | architecture information:
[2026-03-25 22:44:47] 2026-03-25 21:43:51,660 | INFO     | executing command: cat /etc/os-release
[2026-03-25 22:44:47] 2026-03-25 21:43:51,676 | INFO     | cat /etc/os-release:
[2026-03-25 22:44:47] NAME="CentOS Linux"
[2026-03-25 22:44:47] VERSION="7 (Core)"
[2026-03-25 22:44:47] ID="centos"
[2026-03-25 22:44:47] ID_LIKE="rhel fedora"
[2026-03-25 22:44:47] VERSION_ID="7"
[2026-03-25 22:44:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-25 22:44:47] ANSI_COLOR="0;31"
[2026-03-25 22:44:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-25 22:44:47] HOME_URL="https://www.centos.org/"
[2026-03-25 22:44:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-25 22:44:47] 
[2026-03-25 22:44:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-25 22:44:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-25 22:44:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-25 22:44:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-25 22:44:47] 
[2026-03-25 22:44:47] 2026-03-25 21:43:51,677 | INFO     | **************************************
[2026-03-25 22:44:47] 2026-03-25 21:43:52,180 | INFO     | executing command: df -mP /var/lib/boinc/var/slot40/slots/0
[2026-03-25 22:44:47] 2026-03-25 21:43:52,199 | INFO     | sufficient remaining disk space (25877807104 B)
[2026-03-25 22:44:47] 2026-03-25 21:43:52,199 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-25 22:44:47] 2026-03-25 21:43:52,200 | INFO     | current server update state: UPDATING_FINAL
[2026-03-25 22:44:47] 2026-03-25 21:43:52,200 | INFO     | update_server=False
[2026-03-25 22:44:47] 2026-03-25 21:43:52,200 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-25 22:44:47] 2026-03-25 21:43:52,200 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-25 22:44:47] 2026-03-25 21:43:52,561 | INFO     | all payload control threads have been joined
[2026-03-25 22:44:47] 2026-03-25 21:43:52,654 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-25 22:44:47] 2026-03-25 21:43:52,655 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-25 22:44:47] 2026-03-25 21:43:52,655 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-25 22:44:47] 2026-03-25 21:43:52,655 | INFO     | will abort loop
[2026-03-25 22:44:47] 2026-03-25 21:43:53,081 | INFO     | all job control threads have been joined
[2026-03-25 22:44:47] 2026-03-25 21:43:53,192 | INFO     | all data control threads have been joined
[2026-03-25 22:44:47] 2026-03-25 21:43:53,205 | INFO     | [job] retrieve thread has finished
[2026-03-25 22:44:47] 2026-03-25 21:43:53,567 | INFO     | [payload] control thread has finished
[2026-03-25 22:44:47] 2026-03-25 21:43:53,655 | INFO     | [payload] validate_post thread has finished
[2026-03-25 22:44:47] 2026-03-25 21:43:53,656 | INFO     | [job] job monitor thread has finished
[2026-03-25 22:44:47] 2026-03-25 21:43:53,689 | INFO     | [payload] validate_pre thread has finished
[2026-03-25 22:44:47] 2026-03-25 21:43:53,716 | INFO     | [job] validate thread has finished
[2026-03-25 22:44:47] 2026-03-25 21:43:53,862 | INFO     | [job] create_data_payload thread has finished
[2026-03-25 22:44:47] 2026-03-25 21:43:54,087 | INFO     | [job] control thread has finished
[2026-03-25 22:44:47] 2026-03-25 21:43:54,126 | INFO     | [data] copytool_in thread has finished
[2026-03-25 22:44:47] 2026-03-25 21:43:54,159 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-25 22:44:47] 2026-03-25 21:43:54,198 | INFO     | [data] control thread has finished
[2026-03-25 22:44:47] 2026-03-25 21:43:54,206 | INFO     | [data] copytool_out thread has finished
[2026-03-25 22:44:47] 2026-03-25 21:43:54,433 | INFO     | [payload] execute_payloads thread has finished
[2026-03-25 22:44:47] 2026-03-25 21:43:54,435 | INFO     | [payload] failed_post thread has finished
[2026-03-25 22:44:47] 2026-03-25 21:43:55,037 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-25 22:44:47] 2026-03-25 21:43:56,043 | INFO     | [job] queue monitor thread has finished
[2026-03-25 22:44:47] 2026-03-25 21:43:58,165 | INFO     | [data] queue_monitor thread has finished
[2026-03-25 22:44:47] 2026-03-25 21:44:02,368 | INFO     | job.realtimelogging is not enabled
[2026-03-25 22:44:47] 2026-03-25 21:44:03,373 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-25 22:44:47] 2026-03-25 21:44:22,745 | INFO     | PID=15449 has CPU usage=8.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-25 22:44:47] 2026-03-25 21:44:22,745 | INFO     | .. there are 10 such processes running
[2026-03-25 22:44:47] 2026-03-25 21:44:22,746 | INFO     | found 0 job(s) in 20 queues
[2026-03-25 22:44:47] 2026-03-25 21:44:22,746 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-25 22:44:47] 2026-03-25 21:44:22,746 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-25 22:44:47] 2026-03-25 21:44:41,230 | INFO     | [monitor] cgroup control has ended
[2026-03-25 22:44:47] 2026-03-25 21:44:42,217 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22841473505088)>', '<ExcThread(monitor, started 22841164543744)>']
[2026-03-25 22:44:47] 2026-03-25 21:44:42,845 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-25 22:44:47] 2026-03-25 21:44:42,846 | INFO     | [monitor] control thread has ended
[2026-03-25 22:44:47] 2026-03-25 21:44:47,242 | INFO     | all workflow threads have been joined
[2026-03-25 22:44:47] 2026-03-25 21:44:47,243 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-25 22:44:47] 2026-03-25 21:44:47,243 | INFO     | traces error code: 0
[2026-03-25 22:44:47] 2026-03-25 21:44:47,243 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-25 22:44:47] 2026-03-25 21:44:47,427 [wrapper] ==== pilot stdout END ====
[2026-03-25 22:44:47] 2026-03-25 21:44:47,430 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-25 22:44:47] 2026-03-25 21:44:47,432 [wrapper] pilotpid: 15449
[2026-03-25 22:44:47] 2026-03-25 21:44:47,435 [wrapper] Pilot exit status: 0
[2026-03-25 22:44:47] 2026-03-25 21:44:47,444 [wrapper] pandaids: 7062659585 7062659585
[2026-03-25 22:44:47] 2026-03-25 21:44:47,520 [wrapper] cleanup supervisor_pilot  271699 15450
[2026-03-25 22:44:47] 2026-03-25 21:44:47,523 [wrapper] Test setup, not cleaning
[2026-03-25 22:44:47] 2026-03-25 21:44:47,525 [wrapper] apfmon messages muted
[2026-03-25 22:44:47] 2026-03-25 21:44:47,528 [wrapper] ==== wrapper stdout END ====
[2026-03-25 22:44:47] 2026-03-25 21:44:47,530 [wrapper] ==== wrapper stderr END ====
[2026-03-25 22:44:47]  *** Error codes and diagnostics ***
[2026-03-25 22:44:47]     "exeErrorCode": 0,
[2026-03-25 22:44:47]     "exeErrorDiag": "",
[2026-03-25 22:44:47]     "pilotErrorCode": 0,
[2026-03-25 22:44:47]     "pilotErrorDiag": "",
[2026-03-25 22:44:47]  *** Listing of results directory ***
[2026-03-25 22:44:47] total 711296
[2026-03-25 22:44:47] drwx------. 5 boinc boinc      4096 Mar 10 17:00 pilot3
[2026-03-25 22:44:47] -rw-r--r--. 1 boinc boinc    585013 Mar 23 03:20 pilot3.tar.gz
[2026-03-25 22:44:47] -rwx------. 1 boinc boinc     36322 Mar 23 04:24 runpilot2-wrapper.sh
[2026-03-25 22:44:47] -rw-r--r--. 1 boinc boinc      5111 Mar 23 04:29 queuedata.json
[2026-03-25 22:44:47] -rw-r--r--. 1 boinc boinc       100 Mar 25 14:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-25 22:44:47] -rwxr-xr-x. 1 boinc boinc      7986 Mar 25 14:08 run_atlas
[2026-03-25 22:44:47] -rw-r--r--. 1 boinc boinc       105 Mar 25 14:08 job.xml
[2026-03-25 22:44:47] -rw-r--r--. 3 boinc boinc 248984627 Mar 25 14:08 EVNT.49143065._000001.pool.root.1
[2026-03-25 22:44:47] -rw-r--r--. 3 boinc boinc 248984627 Mar 25 14:08 ATLAS.root_0
[2026-03-25 22:44:47] -rw-r--r--. 2 boinc boinc    597548 Mar 25 14:08 input.tar.gz
[2026-03-25 22:44:47] -rw-r--r--. 2 boinc boinc     15845 Mar 25 14:08 start_atlas.sh
[2026-03-25 22:44:47] drwxrwx--x. 2 boinc boinc      4096 Mar 25 14:08 shared
[2026-03-25 22:44:47] -rw-r--r--. 1 boinc boinc         0 Mar 25 14:08 boinc_lockfile
[2026-03-25 22:44:47] -rw-r--r--. 1 boinc boinc      2617 Mar 25 17:43 pandaJob.out
[2026-03-25 22:44:47] -rw-------. 1 boinc boinc   1011933 Mar 25 17:43 agis_schedconf.cvmfs.json
[2026-03-25 22:44:47] -rw-------. 1 boinc boinc       452 Mar 25 17:43 workernode_map.json
[2026-03-25 22:44:47] -rw-r--r--. 1 boinc boinc      6570 Mar 25 19:09 init_data.xml
[2026-03-25 22:44:47] -rw-------. 1 boinc boinc 220513105 Mar 25 22:43 HITS.49285707._000040.pool.root.1
[2026-03-25 22:44:47] -rw-r--r--. 1 boinc boinc       530 Mar 25 22:43 boinc_task_state.xml
[2026-03-25 22:44:47] -rw-------. 1 boinc boinc      1035 Mar 25 22:43 memory_monitor_summary.json
[2026-03-25 22:44:47] -rw-------. 1 boinc boinc   1511579 Mar 25 22:43 agis_ddmendpoints.agis.ALL.json
[2026-03-25 22:44:47] -rw-------. 1 boinc boinc    444977 Mar 25 22:43 log.49285707._000040.job.log.tgz.1
[2026-03-25 22:44:47] -rw-------. 1 boinc boinc      6404 Mar 25 22:43 heartbeat.json
[2026-03-25 22:44:47] -rw-------. 1 boinc boinc        96 Mar 25 22:44 pilot_heartbeat.json
[2026-03-25 22:44:47] -rw-r--r--. 1 boinc boinc      8192 Mar 25 22:44 boinc_mmap_file
[2026-03-25 22:44:47] -rw-r--r--. 1 boinc boinc        28 Mar 25 22:44 wrapper_checkpoint.txt
[2026-03-25 22:44:47] -rw-------. 1 boinc boinc      5085 Mar 25 22:44 pilotlog.txt
[2026-03-25 22:44:47] -rw-------. 1 boinc boinc   2521545 Mar 25 22:44 log.49285707._000040.job.log.1
[2026-03-25 22:44:47] -rw-------. 1 boinc boinc       357 Mar 25 22:44 output.list
[2026-03-25 22:44:47] -rw-r--r--. 1 boinc boinc       620 Mar 25 22:44 runtime_log
[2026-03-25 22:44:47] -rw-------. 1 boinc boinc   2979840 Mar 25 22:44 result.tar.gz
[2026-03-25 22:44:47] -rw-r--r--. 1 boinc boinc      9282 Mar 25 22:44 runtime_log.err
[2026-03-25 22:44:47] -rw-------. 1 boinc boinc       790 Mar 25 22:44 rWILDmH5kO9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm3v8LDmzBtHQn.diag
[2026-03-25 22:44:47] -rw-r--r--. 1 boinc boinc     22727 Mar 25 22:44 stderr.txt
[2026-03-25 22:44:47] HITS file was successfully produced:
[2026-03-25 22:44:47] -rw-------. 1 boinc boinc 220513105 Mar 25 22:43 shared/HITS.pool.root.1
[2026-03-25 22:44:47]  *** Contents of shared directory: ***
[2026-03-25 22:44:47] total 462020
[2026-03-25 22:44:47] -rw-r--r--. 3 boinc boinc 248984627 Mar 25 14:08 ATLAS.root_0
[2026-03-25 22:44:47] -rw-r--r--. 2 boinc boinc    597548 Mar 25 14:08 input.tar.gz
[2026-03-25 22:44:47] -rw-r--r--. 2 boinc boinc     15845 Mar 25 14:08 start_atlas.sh
[2026-03-25 22:44:47] -rw-------. 1 boinc boinc 220513105 Mar 25 22:43 HITS.pool.root.1
[2026-03-25 22:44:47] -rw-------. 1 boinc boinc   2979840 Mar 25 22:44 result.tar.gz
22:44:49 (4190557): run_atlas exited; CPU time 71185.225804
22:44:49 (4190557): called boinc_finish(0)

</stderr_txt>
]]>

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