Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
04:33:12 (424137): wrapper (7.7.26015): starting
04:33:12 (424137): wrapper: running run_atlas (--nthreads 4)
[2026-03-23 04:33:12] Arguments: --nthreads 4
[2026-03-23 04:33:12] Threads: 4
[2026-03-23 04:33:12] Checking for CVMFS
[2026-03-23 04:33:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-23 04:33:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-23 04:33:13] Running cvmfs_config stat atlas.cern.ch
[2026-03-23 04:33:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-23 04:33:14] 2.13.3.0 67972 1780 56328 157607 1 228 2593397 4096001 2610 130560 0 944670 99.492 341378 1213 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 0
[2026-03-23 04:33:14] CVMFS is ok
[2026-03-23 04:33:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-23 04:33:14] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-23 04:33:14] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-23 04:33:14] Further information can be found at the LHC@home message board.
[2026-03-23 04:33:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-23 04:33:14] Checking for apptainer binary...
[2026-03-23 04:33:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-23 04:33:14] Running /usr/bin/apptainer --version
[2026-03-23 04:33:14] apptainer version 1.4.5
[2026-03-23 04:33:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-23 04:33:14] T3500-Ubuntu
[2026-03-23 04:33:14] apptainer works
[2026-03-23 04:33:14] Set ATHENA_PROC_NUMBER=4
[2026-03-23 04:33:14] Set ATHENA_CORE_NUMBER=4
[2026-03-23 04:33:14] Starting ATLAS job with PandaID=7062735942
[2026-03-23 04:33:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:49:28 (8420): wrapper (7.7.26015): starting
07:49:28 (8420): wrapper: running run_atlas (--nthreads 4)
[2026-03-23 07:49:28] Arguments: --nthreads 4
[2026-03-23 07:49:28] Threads: 4
[2026-03-23 07:49:28] This job has been restarted, cleaning up previous attempt
[2026-03-23 07:49:28] Checking for CVMFS
[2026-03-23 07:49:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-23 07:49:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-23 07:49:33] Running cvmfs_config stat atlas.cern.ch
[2026-03-23 07:49:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-23 07:49:33] 2.13.3.0 8899 0 24548 157612 3 1 2611719 4096000 0 130560 0 0 0.000 1337 712 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 0
[2026-03-23 07:49:33] CVMFS is ok
[2026-03-23 07:49:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-23 07:49:33] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-23 07:49:33] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-23 07:49:33] Further information can be found at the LHC@home message board.
[2026-03-23 07:49:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-23 07:49:33] Checking for apptainer binary...
[2026-03-23 07:49:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-23 07:49:33] Running /usr/bin/apptainer --version
[2026-03-23 07:49:33] apptainer version 1.4.5
[2026-03-23 07:49:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-23 07:49:34] T3500-Ubuntu
[2026-03-23 07:49:34] apptainer works
[2026-03-23 07:49:34] Set ATHENA_PROC_NUMBER=4
[2026-03-23 07:49:34] Set ATHENA_CORE_NUMBER=4
[2026-03-23 07:49:34] Starting ATLAS job with PandaID=7062735942
[2026-03-23 07:49:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/whitlerd/Desktop/BOINC/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-23 12:03:34]  *** The last 200 lines of the pilot log: ***
[2026-03-23 12:03:34] 2026-03-23 16:03:01,212 | INFO     | current chi2=0.010340706385908225 (change=99.24250733305743 %)
[2026-03-23 12:03:34] 2026-03-23 16:03:01,213 | INFO     | sum of square deviations: 4233158440.0
[2026-03-23 12:03:34] 2026-03-23 16:03:01,214 | INFO     | sum of deviations: 7980224106.0
[2026-03-23 12:03:34] 2026-03-23 16:03:01,214 | INFO     | mean x: 1774274483.0
[2026-03-23 12:03:34] 2026-03-23 16:03:01,214 | INFO     | mean y: 2564516.648535565
[2026-03-23 12:03:34] 2026-03-23 16:03:01,215 | INFO     | intersect: -3342244849.8294377
[2026-03-23 12:03:34] 2026-03-23 16:03:01,215 | INFO     | chi2: 0.0025002506804269065
[2026-03-23 12:03:34] 2026-03-23 16:03:01,215 | INFO     | current chi2=0.0025002506804269065 (change=75.82127770464388 %)
[2026-03-23 12:03:34] 2026-03-23 16:03:01,215 | INFO     | sum of square deviations: 3972995422.5
[2026-03-23 12:03:34] 2026-03-23 16:03:01,217 | INFO     | sum of deviations: 6158264119.500001
[2026-03-23 12:03:34] 2026-03-23 16:03:01,217 | INFO     | mean x: 1774274635.5
[2026-03-23 12:03:34] 2026-03-23 16:03:01,217 | INFO     | mean y: 2565583.44017094
[2026-03-23 12:03:34] 2026-03-23 16:03:01,217 | INFO     | intersect: -2747614234.0495615
[2026-03-23 12:03:34] 2026-03-23 16:03:01,218 | INFO     | chi2: 0.0013641121579221454
[2026-03-23 12:03:34] 2026-03-23 16:03:01,218 | INFO     | current chi2=0.0013641121579221454 (change=45.440984434039656 %)
[2026-03-23 12:03:34] 2026-03-23 16:03:01,218 | INFO     | sum of square deviations: 3723716330.0
[2026-03-23 12:03:34] 2026-03-23 16:03:01,220 | INFO     | sum of deviations: 4841666258.000001
[2026-03-23 12:03:34] 2026-03-23 16:03:01,220 | INFO     | mean x: 1774274788.0
[2026-03-23 12:03:34] 2026-03-23 16:03:01,220 | INFO     | mean y: 2566388.8384279474
[2026-03-23 12:03:34] 2026-03-23 16:03:01,220 | INFO     | intersect: -2304388709.8276687
[2026-03-23 12:03:34] 2026-03-23 16:03:01,220 | INFO     | chi2: 0.0007968213407971368
[2026-03-23 12:03:34] 2026-03-23 16:03:01,220 | INFO     | current chi2=0.0007968213407971368 (change=41.58681629149338 %)
[2026-03-23 12:03:34] 2026-03-23 16:03:01,221 | INFO     | sum of square deviations: 3485088600.0
[2026-03-23 12:03:34] 2026-03-23 16:03:01,222 | INFO     | sum of deviations: 3742840043.5
[2026-03-23 12:03:34] 2026-03-23 16:03:01,222 | INFO     | mean x: 1774274940.5
[2026-03-23 12:03:34] 2026-03-23 16:03:01,222 | INFO     | mean y: 2567090.59375
[2026-03-23 12:03:34] 2026-03-23 16:03:01,222 | INFO     | intersect: -1902930317.8457313
[2026-03-23 12:03:34] 2026-03-23 16:03:01,223 | INFO     | chi2: 0.00036858052490701805
[2026-03-23 12:03:34] 2026-03-23 16:03:01,223 | INFO     | current chi2=0.00036858052490701805 (change=53.743642892609834 %)
[2026-03-23 12:03:34] 2026-03-23 16:03:01,223 | INFO     | sum of square deviations: 3256879670.0
[2026-03-23 12:03:34] 2026-03-23 16:03:01,225 | INFO     | sum of deviations: 3118080453.0
[2026-03-23 12:03:34] 2026-03-23 16:03:01,225 | INFO     | mean x: 1774275093.0
[2026-03-23 12:03:34] 2026-03-23 16:03:01,225 | INFO     | mean y: 2567506.4566210047
[2026-03-23 12:03:34] 2026-03-23 16:03:01,225 | INFO     | intersect: -1696092882.1011355
[2026-03-23 12:03:34] 2026-03-23 16:03:01,225 | INFO     | chi2: 0.00023423904596645817
[2026-03-23 12:03:34] 2026-03-23 16:03:01,225 | INFO     | current chi2=0.00023423904596645817 (change=36.448338927958886 %)
[2026-03-23 12:03:34] 2026-03-23 16:03:01,226 | INFO     | sum of square deviations: 3038856977.5
[2026-03-23 12:03:34] 2026-03-23 16:03:01,227 | INFO     | sum of deviations: 2702251840.5
[2026-03-23 12:03:34] 2026-03-23 16:03:01,227 | INFO     | mean x: 1774275245.5
[2026-03-23 12:03:34] 2026-03-23 16:03:01,227 | INFO     | mean y: 2567797.2102803737
[2026-03-23 12:03:34] 2026-03-23 16:03:01,227 | INFO     | intersect: -1575176263.5353243
[2026-03-23 12:03:34] 2026-03-23 16:03:01,228 | INFO     | chi2: 0.0002020165419994123
[2026-03-23 12:03:34] 2026-03-23 16:03:01,228 | INFO     | current chi2=0.0002020165419994123 (change=13.756247953494471 %)
[2026-03-23 12:03:34] 2026-03-23 16:03:01,228 | INFO     | left removable region: 70
[2026-03-23 12:03:34] 2026-03-23 16:03:01,228 | INFO     | sum of square deviations: 1605470102.0
[2026-03-23 12:03:34] 2026-03-23 16:03:01,229 | INFO     | sum of deviations: 826826269.0
[2026-03-23 12:03:34] 2026-03-23 16:03:01,229 | INFO     | mean x: 1774276130.0
[2026-03-23 12:03:34] 2026-03-23 16:03:01,230 | INFO     | mean y: 2569269.710982659
[2026-03-23 12:03:34] 2026-03-23 16:03:01,230 | INFO     | intersect: -911193067.5110772
[2026-03-23 12:03:34] 2026-03-23 16:03:01,230 | INFO     | chi2: 5.335803790978937e-05
[2026-03-23 12:03:34] 2026-03-23 16:03:01,230 | INFO     | current memory leak: 0.52 B/s (using 173 data points, chi2=0.00)
[2026-03-23 12:03:34] 2026-03-23 16:03:01,231 | INFO     | could have reported an average CPU frequency of 3199 MHz (12 samples)
[2026-03-23 12:03:34] 2026-03-23 16:03:01,231 | INFO     | ..............................
[2026-03-23 12:03:34] 2026-03-23 16:03:01,231 | INFO     | . Timing measurements:
[2026-03-23 12:03:34] 2026-03-23 16:03:01,231 | INFO     | . get job = 0 s
[2026-03-23 12:03:34] 2026-03-23 16:03:01,231 | INFO     | . initial setup = 2 s
[2026-03-23 12:03:34] 2026-03-23 16:03:01,231 | INFO     | . payload setup = 8 s
[2026-03-23 12:03:34] 2026-03-23 16:03:01,231 | INFO     | . stage-in = 0 s
[2026-03-23 12:03:34] 2026-03-23 16:03:01,231 | INFO     | . payload execution = 15161 s
[2026-03-23 12:03:34] 2026-03-23 16:03:01,231 | INFO     | . stage-out = 2 s
[2026-03-23 12:03:34] 2026-03-23 16:03:01,231 | INFO     | . log creation = 0 s
[2026-03-23 12:03:34] 2026-03-23 16:03:01,232 | INFO     | ..............................
[2026-03-23 12:03:34] 2026-03-23 16:03:01,321 | INFO     | 
[2026-03-23 12:03:34] 2026-03-23 16:03:01,321 | INFO     | job summary report
[2026-03-23 12:03:34] 2026-03-23 16:03:01,321 | INFO     | --------------------------------------------------
[2026-03-23 12:03:34] 2026-03-23 16:03:01,321 | INFO     | PanDA job id: 7062735942
[2026-03-23 12:03:34] 2026-03-23 16:03:01,321 | INFO     | task id: 49280059
[2026-03-23 12:03:34] 2026-03-23 16:03:01,322 | INFO     | errors: (none)
[2026-03-23 12:03:34] 2026-03-23 16:03:01,322 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-23 12:03:34] 2026-03-23 16:03:01,322 | INFO     | pilot state: finished 
[2026-03-23 12:03:34] 2026-03-23 16:03:01,322 | INFO     | transexitcode: 0
[2026-03-23 12:03:34] 2026-03-23 16:03:01,322 | INFO     | exeerrorcode: 0
[2026-03-23 12:03:34] 2026-03-23 16:03:01,322 | INFO     | exeerrordiag: 
[2026-03-23 12:03:34] 2026-03-23 16:03:01,322 | INFO     | exitcode: 0
[2026-03-23 12:03:34] 2026-03-23 16:03:01,322 | INFO     | exitmsg: OK
[2026-03-23 12:03:34] 2026-03-23 16:03:01,322 | INFO     | cpuconsumptiontime: 59325 s
[2026-03-23 12:03:34] 2026-03-23 16:03:01,323 | INFO     | nevents: 400
[2026-03-23 12:03:34] 2026-03-23 16:03:01,323 | INFO     | neventsw: 0
[2026-03-23 12:03:34] 2026-03-23 16:03:01,323 | INFO     | pid: 34431
[2026-03-23 12:03:34] 2026-03-23 16:03:01,323 | INFO     | pgrp: 34431
[2026-03-23 12:03:34] 2026-03-23 16:03:01,323 | INFO     | corecount: 4
[2026-03-23 12:03:34] 2026-03-23 16:03:01,323 | INFO     | event service: False
[2026-03-23 12:03:34] 2026-03-23 16:03:01,323 | INFO     | sizes: {0: 2280227, 11: 2280227, 15174: 2311341, 15177: 2320367, 15179: 2320617}
[2026-03-23 12:03:34] 2026-03-23 16:03:01,323 | INFO     | --------------------------------------------------
[2026-03-23 12:03:34] 2026-03-23 16:03:01,323 | INFO     | 
[2026-03-23 12:03:34] 2026-03-23 16:03:01,323 | INFO     | executing command: ls -lF /home/whitlerd/Desktop/BOINC/slots/6
[2026-03-23 12:03:34] 2026-03-23 16:03:01,346 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-23 12:03:34] 2026-03-23 16:03:01,346 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-23 12:03:34] 2026-03-23 16:03:01,346 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-23 12:03:34] 2026-03-23 16:03:01,346 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-23 12:03:34] 2026-03-23 16:03:01,346 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-23 12:03:34] 2026-03-23 16:03:01,346 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-23 12:03:34] 2026-03-23 16:03:01,347 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-23 12:03:34] 2026-03-23 16:03:01,347 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-23 12:03:34] 2026-03-23 16:03:01,347 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-23 12:03:34] 2026-03-23 16:03:01,347 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-23 12:03:34] 2026-03-23 16:03:01,347 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-23 12:03:34] 2026-03-23 16:03:01,347 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-23 12:03:34] 2026-03-23 16:03:01,347 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-23 12:03:34] 2026-03-23 16:03:01,347 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-23 12:03:34] 2026-03-23 16:03:01,347 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-23 12:03:34] 2026-03-23 16:03:01,348 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-23 12:03:34] 2026-03-23 16:03:01,348 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-23 12:03:34] 2026-03-23 16:03:01,348 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-23 12:03:34] 2026-03-23 16:03:01,348 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-23 12:03:34] 2026-03-23 16:03:01,348 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-23 12:03:34] 2026-03-23 16:03:01,348 | INFO     | job 7062735942 has completed (purged errors)
[2026-03-23 12:03:34] 2026-03-23 16:03:01,348 | INFO     | overall cleanup function is called
[2026-03-23 12:03:34] 2026-03-23 16:03:01,710 | INFO     | PID=24549 has CPU usage=9.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-23 12:03:34] 2026-03-23 16:03:01,710 | INFO     | .. there are 4 such processes running
[2026-03-23 12:03:34] 2026-03-23 16:03:02,352 | INFO     | --- collectZombieJob: --- 10, [34431]
[2026-03-23 12:03:34] 2026-03-23 16:03:02,353 | INFO     | zombie collector waiting for pid 34431
[2026-03-23 12:03:34] 2026-03-23 16:03:02,353 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-23 12:03:34] 2026-03-23 16:03:02,353 | INFO     | collected zombie processes
[2026-03-23 12:03:34] 2026-03-23 16:03:02,353 | INFO     | will attempt to kill all subprocesses of pid=34431
[2026-03-23 12:03:34] 2026-03-23 16:03:02,578 | INFO     | process IDs to be killed: [34431] (in reverse order)
[2026-03-23 12:03:34] 2026-03-23 16:03:02,654 | WARNING  | found no corresponding commands to process id(s)
[2026-03-23 12:03:34] 2026-03-23 16:03:02,655 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-23 12:03:34] 2026-03-23 16:03:02,661 | INFO     | did not find any defunct processes belonging to 34431
[2026-03-23 12:03:34] 2026-03-23 16:03:02,666 | INFO     | did not find any defunct processes belonging to 34431
[2026-03-23 12:03:34] 2026-03-23 16:03:02,667 | INFO     | ready for new job
[2026-03-23 12:03:34] 2026-03-23 16:03:02,667 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-23 12:03:34] 2026-03-23 16:03:02,669 | INFO     | **************************************
[2026-03-23 12:03:34] 2026-03-23 16:03:02,669 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-23 12:03:34] 2026-03-23 16:03:02,669 | INFO     | **************************************
[2026-03-23 12:03:34] 2026-03-23 16:03:02,669 | INFO     | 
[2026-03-23 12:03:34] 2026-03-23 16:03:02,671 | INFO     | architecture information:
[2026-03-23 12:03:34] 2026-03-23 16:03:02,671 | INFO     | executing command: cat /etc/os-release
[2026-03-23 12:03:34] 2026-03-23 16:03:02,688 | INFO     | cat /etc/os-release:
[2026-03-23 12:03:34] NAME="CentOS Linux"
[2026-03-23 12:03:34] VERSION="7 (Core)"
[2026-03-23 12:03:34] ID="centos"
[2026-03-23 12:03:34] ID_LIKE="rhel fedora"
[2026-03-23 12:03:34] VERSION_ID="7"
[2026-03-23 12:03:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-23 12:03:34] ANSI_COLOR="0;31"
[2026-03-23 12:03:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-23 12:03:34] HOME_URL="https://www.centos.org/"
[2026-03-23 12:03:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-23 12:03:34] 
[2026-03-23 12:03:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-23 12:03:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-23 12:03:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-23 12:03:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-23 12:03:34] 
[2026-03-23 12:03:34] 2026-03-23 16:03:02,688 | INFO     | **************************************
[2026-03-23 12:03:34] 2026-03-23 16:03:03,190 | INFO     | executing command: df -mP /home/whitlerd/Desktop/BOINC/slots/6
[2026-03-23 12:03:34] 2026-03-23 16:03:03,209 | INFO     | sufficient remaining disk space (407370727424 B)
[2026-03-23 12:03:34] 2026-03-23 16:03:03,209 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-23 12:03:34] 2026-03-23 16:03:03,209 | INFO     | current server update state: UPDATING_FINAL
[2026-03-23 12:03:34] 2026-03-23 16:03:03,209 | INFO     | update_server=False
[2026-03-23 12:03:34] 2026-03-23 16:03:03,209 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-23 12:03:34] 2026-03-23 16:03:03,210 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-23 12:03:34] 2026-03-23 16:03:03,210 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-23 12:03:34] 2026-03-23 16:03:03,348 | INFO     | all data control threads have been joined
[2026-03-23 12:03:34] 2026-03-23 16:03:03,404 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-23 12:03:34] 2026-03-23 16:03:03,404 | INFO     | aborting loop
[2026-03-23 12:03:34] 2026-03-23 16:03:03,631 | INFO     | all payload control threads have been joined
[2026-03-23 12:03:34] 2026-03-23 16:03:04,215 | INFO     | [job] retrieve thread has finished
[2026-03-23 12:03:34] 2026-03-23 16:03:04,216 | INFO     | [job] queue monitor thread has finished
[2026-03-23 12:03:34] 2026-03-23 16:03:04,225 | INFO     | [payload] failed_post thread has finished
[2026-03-23 12:03:34] 2026-03-23 16:03:04,343 | INFO     | all job control threads have been joined
[2026-03-23 12:03:34] 2026-03-23 16:03:04,353 | INFO     | [data] control thread has finished
[2026-03-23 12:03:34] 2026-03-23 16:03:04,409 | INFO     | [job] job monitor thread has finished
[2026-03-23 12:03:34] 2026-03-23 16:03:04,472 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-23 12:03:34] 2026-03-23 16:03:04,589 | INFO     | [job] create_data_payload thread has finished
[2026-03-23 12:03:34] 2026-03-23 16:03:04,637 | INFO     | [payload] control thread has finished
[2026-03-23 12:03:34] 2026-03-23 16:03:04,749 | INFO     | [payload] validate_post thread has finished
[2026-03-23 12:03:34] 2026-03-23 16:03:04,760 | INFO     | [job] validate thread has finished
[2026-03-23 12:03:34] 2026-03-23 16:03:04,916 | INFO     | [payload] validate_pre thread has finished
[2026-03-23 12:03:34] 2026-03-23 16:03:05,340 | INFO     | [data] copytool_in thread has finished
[2026-03-23 12:03:34] 2026-03-23 16:03:05,348 | INFO     | [job] control thread has finished
[2026-03-23 12:03:34] 2026-03-23 16:03:05,641 | INFO     | [payload] execute_payloads thread has finished
[2026-03-23 12:03:34] 2026-03-23 16:03:06,477 | INFO     | [data] copytool_out thread has finished
[2026-03-23 12:03:34] 2026-03-23 16:03:07,215 | INFO     | [data] queue_monitor thread has finished
[2026-03-23 12:03:34] 2026-03-23 16:03:12,976 | INFO     | [monitor] cgroup control has ended
[2026-03-23 12:03:34] 2026-03-23 16:03:13,407 | INFO     | job.realtimelogging is not enabled
[2026-03-23 12:03:34] 2026-03-23 16:03:14,412 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-23 12:03:34] 2026-03-23 16:03:14,684 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139470871574336)>', '<ExcThread(monitor, started 139470355535616)>']
[2026-03-23 12:03:34] 2026-03-23 16:03:19,709 | INFO     | all workflow threads have been joined
[2026-03-23 12:03:34] 2026-03-23 16:03:19,709 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-23 12:03:34] 2026-03-23 16:03:19,709 | INFO     | traces error code: 0
[2026-03-23 12:03:34] 2026-03-23 16:03:19,710 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-23 12:03:34] 2026-03-23 16:03:33,960 | INFO     | PID=24549 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-23 12:03:34] 2026-03-23 16:03:33,960 | INFO     | .. there are 4 such processes running
[2026-03-23 12:03:34] 2026-03-23 16:03:33,961 | INFO     | found 0 job(s) in 20 queues
[2026-03-23 12:03:34] 2026-03-23 16:03:33,961 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-23 12:03:34] 2026-03-23 16:03:33,961 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-23 12:03:34] 2026-03-23 16:03:33,961 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-23 12:03:34] 2026-03-23 16:03:33,961 | INFO     | [monitor] control thread has ended
[2026-03-23 12:03:34] 2026-03-23 16:03:34,072 [wrapper] ==== pilot stdout END ====
[2026-03-23 12:03:34] 2026-03-23 16:03:34,075 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-23 12:03:34] 2026-03-23 16:03:34,079 [wrapper] pilotpid: 24549
[2026-03-23 12:03:34] 2026-03-23 16:03:34,081 [wrapper] Pilot exit status: 0
[2026-03-23 12:03:34] 2026-03-23 16:03:34,093 [wrapper] pandaids: 7062735942 7062735942
[2026-03-23 12:03:34] 2026-03-23 16:03:34,137 [wrapper] cleanup supervisor_pilot   75933 24550
[2026-03-23 12:03:34] 2026-03-23 16:03:34,141 [wrapper] Test setup, not cleaning
[2026-03-23 12:03:34] 2026-03-23 16:03:34,145 [wrapper] apfmon messages muted
[2026-03-23 12:03:34] 2026-03-23 16:03:34,148 [wrapper] ==== wrapper stdout END ====
[2026-03-23 12:03:34] 2026-03-23 16:03:34,151 [wrapper] ==== wrapper stderr END ====
[2026-03-23 12:03:34]  *** Error codes and diagnostics ***
[2026-03-23 12:03:34]     "exeErrorCode": 0,
[2026-03-23 12:03:34]     "exeErrorDiag": "",
[2026-03-23 12:03:34]     "pilotErrorCode": 0,
[2026-03-23 12:03:34]     "pilotErrorDiag": "",
[2026-03-23 12:03:34]  *** Listing of results directory ***
[2026-03-23 12:03:34] total 731528
[2026-03-23 12:03:34] drwx------ 5 whitlerd whitlerd      4096 Mar 10 12:00 pilot3
[2026-03-23 12:03:34] -rw-r--r-- 1 whitlerd whitlerd    585013 Mar 22 22:20 pilot3.tar.gz
[2026-03-23 12:03:34] -rwx------ 1 whitlerd whitlerd     36322 Mar 22 23:22 runpilot2-wrapper.sh
[2026-03-23 12:03:34] -rw-r--r-- 1 whitlerd whitlerd      5111 Mar 22 23:26 queuedata.json
[2026-03-23 12:03:34] -rw-rw-r-- 1 whitlerd whitlerd       100 Mar 23 04:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-23 12:03:34] -rwxr-xr-x 1 whitlerd whitlerd      7986 Mar 23 04:33 run_atlas
[2026-03-23 12:03:34] -rw-rw-r-- 1 whitlerd whitlerd       105 Mar 23 04:33 job.xml
[2026-03-23 12:03:34] -rw-r--r-- 3 whitlerd whitlerd 254797775 Mar 23 04:33 EVNT.49139513._000001.pool.root.1
[2026-03-23 12:03:34] -rw-r--r-- 3 whitlerd whitlerd 254797775 Mar 23 04:33 ATLAS.root_0
[2026-03-23 12:03:34] -rw-r--r-- 2 whitlerd whitlerd    597541 Mar 23 04:33 input.tar.gz
[2026-03-23 12:03:34] drwxrwx--x 2 whitlerd whitlerd      4096 Mar 23 04:33 shared
[2026-03-23 12:03:34] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar 23 04:33 start_atlas.sh
[2026-03-23 12:03:34] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar 23 04:33 boinc_setup_complete
[2026-03-23 12:03:34] -rw-rw-r-- 1 whitlerd whitlerd         0 Mar 23 04:33 boinc_lockfile
[2026-03-23 12:03:34] -rw-rw-r-- 1 whitlerd whitlerd      2587 Mar 23 07:49 pandaJob.out
[2026-03-23 12:03:34] -rw------- 1 whitlerd whitlerd   1010850 Mar 23 07:49 agis_schedconf.cvmfs.json
[2026-03-23 12:03:34] -rw------- 1 whitlerd whitlerd       437 Mar 23 07:49 workernode_map.json
[2026-03-23 12:03:34] -rw-rw-r-- 1 whitlerd whitlerd      9208 Mar 23 07:50 init_data.xml
[2026-03-23 12:03:34] -rw------- 1 whitlerd whitlerd 230341651 Mar 23 12:02 HITS.49280059._000047.pool.root.1
[2026-03-23 12:03:34] -rw-rw-r-- 1 whitlerd whitlerd       531 Mar 23 12:02 boinc_task_state.xml
[2026-03-23 12:03:34] -rw------- 1 whitlerd whitlerd      1043 Mar 23 12:02 memory_monitor_summary.json
[2026-03-23 12:03:34] -rw------- 1 whitlerd whitlerd   1511579 Mar 23 12:02 agis_ddmendpoints.agis.ALL.json
[2026-03-23 12:03:34] -rw------- 1 whitlerd whitlerd    422630 Mar 23 12:02 log.49280059._000047.job.log.tgz.1
[2026-03-23 12:03:34] -rw------- 1 whitlerd whitlerd      6348 Mar 23 12:03 heartbeat.json
[2026-03-23 12:03:34] -rw-rw-r-- 1 whitlerd whitlerd      8192 Mar 23 12:03 boinc_mmap_file
[2026-03-23 12:03:34] -rw-rw-r-- 1 whitlerd whitlerd        28 Mar 23 12:03 wrapper_checkpoint.txt
[2026-03-23 12:03:34] -rw------- 1 whitlerd whitlerd       820 Mar 23 12:03 pilotlog.txt
[2026-03-23 12:03:34] -rw------- 1 whitlerd whitlerd        97 Mar 23 12:03 pilot_heartbeat.json
[2026-03-23 12:03:34] -rw------- 1 whitlerd whitlerd   2180575 Mar 23 12:03 log.49280059._000047.job.log.1
[2026-03-23 12:03:34] -rw------- 1 whitlerd whitlerd       357 Mar 23 12:03 output.list
[2026-03-23 12:03:34] -rw-rw-r-- 1 whitlerd whitlerd       620 Mar 23 12:03 runtime_log
[2026-03-23 12:03:34] -rw------- 1 whitlerd whitlerd   2621440 Mar 23 12:03 result.tar.gz
[2026-03-23 12:03:34] -rw-rw-r-- 1 whitlerd whitlerd      9105 Mar 23 12:03 runtime_log.err
[2026-03-23 12:03:34] -rw------- 1 whitlerd whitlerd       780 Mar 23 12:03 2HhKDmP3kO9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmit8LDmCOG32n.diag
[2026-03-23 12:03:34] -rw-rw-r-- 1 whitlerd whitlerd     23344 Mar 23 12:03 stderr.txt
[2026-03-23 12:03:34] HITS file was successfully produced:
[2026-03-23 12:03:34] -rw------- 1 whitlerd whitlerd 230341651 Mar 23 12:02 shared/HITS.pool.root.1
[2026-03-23 12:03:34]  *** Contents of shared directory: ***
[2026-03-23 12:03:34] total 476936
[2026-03-23 12:03:34] -rw-r--r-- 3 whitlerd whitlerd 254797775 Mar 23 04:33 ATLAS.root_0
[2026-03-23 12:03:34] -rw-r--r-- 2 whitlerd whitlerd    597541 Mar 23 04:33 input.tar.gz
[2026-03-23 12:03:34] -rw-r--r-- 2 whitlerd whitlerd     15845 Mar 23 04:33 start_atlas.sh
[2026-03-23 12:03:34] -rw------- 1 whitlerd whitlerd 230341651 Mar 23 12:02 HITS.pool.root.1
[2026-03-23 12:03:34] -rw------- 1 whitlerd whitlerd   2621440 Mar 23 12:03 result.tar.gz
12:03:35 (8420): run_atlas exited; CPU time 59666.736620
12:03:35 (8420): called boinc_finish(0)

</stderr_txt>
]]>

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