Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:15:34 (2814652): wrapper (7.7.26015): starting
14:15:34 (2814652): wrapper: running run_atlas (--nthreads 2)
[2026-03-23 14:15:34] Arguments: --nthreads 2
[2026-03-23 14:15:34] Threads: 2
[2026-03-23 14:15:34] Checking for CVMFS
[2026-03-23 14:15:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-23 14:15:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-23 14:15:34] Running cvmfs_config stat atlas.cern.ch
[2026-03-23 14:15:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-23 14:15:34] 2.9.2.0 2720343 1182 54040 157612 3 50 26666320 36864001 0 130560 0 233278 99.969 38066 14573 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-23 14:15:34] CVMFS is ok
[2026-03-23 14:15:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-23 14:15:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-23 14:15:34] Further information can be found at the LHC@home message board.
[2026-03-23 14:15:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-23 14:15:34] Checking for apptainer binary...
[2026-03-23 14:15:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-23 14:15:34] Running /usr/bin/apptainer --version
[2026-03-23 14:15:34] apptainer version 1.4.1-1.1
[2026-03-23 14:15:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-23 14:15:34] atlasA219
[2026-03-23 14:15:34] apptainer works
[2026-03-23 14:15:34] Set ATHENA_PROC_NUMBER=2
[2026-03-23 14:15:34] Set ATHENA_CORE_NUMBER=2
[2026-03-23 14:15:34] Starting ATLAS job with PandaID=7062372608
[2026-03-23 14:15:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-23 19:17:15]  *** The last 200 lines of the pilot log: ***
[2026-03-23 19:17:15] 2026-03-23 18:16:25,545 | INFO     | --- collectZombieJob: --- 10, [2823100]
[2026-03-23 19:17:15] 2026-03-23 18:16:25,545 | INFO     | zombie collector waiting for pid 2823100
[2026-03-23 19:17:15] 2026-03-23 18:16:25,545 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-23 19:17:15] 2026-03-23 18:16:25,545 | INFO     | collected zombie processes
[2026-03-23 19:17:15] 2026-03-23 18:16:25,545 | INFO     | will attempt to kill all subprocesses of pid=2823100
[2026-03-23 19:17:15] 2026-03-23 18:16:25,584 | INFO     | process IDs to be killed: [2823100] (in reverse order)
[2026-03-23 19:17:15] 2026-03-23 18:16:25,609 | WARNING  | found no corresponding commands to process id(s)
[2026-03-23 19:17:15] 2026-03-23 18:16:25,609 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-23 19:17:15] 2026-03-23 18:16:25,610 | INFO     | did not find any defunct processes belonging to 2823100
[2026-03-23 19:17:15] 2026-03-23 18:16:25,611 | INFO     | did not find any defunct processes belonging to 2823100
[2026-03-23 19:17:15] 2026-03-23 18:16:25,611 | INFO     | ready for new job
[2026-03-23 19:17:15] 2026-03-23 18:16:25,611 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-23 19:17:15] 2026-03-23 18:16:25,611 | INFO     | **************************************
[2026-03-23 19:17:15] 2026-03-23 18:16:25,612 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-23 19:17:15] 2026-03-23 18:16:25,612 | INFO     | **************************************
[2026-03-23 19:17:15] 2026-03-23 18:16:25,612 | INFO     | 
[2026-03-23 19:17:15] 2026-03-23 18:16:25,612 | INFO     | architecture information:
[2026-03-23 19:17:15] 2026-03-23 18:16:25,612 | INFO     | executing command: cat /etc/os-release
[2026-03-23 19:17:15] 2026-03-23 18:16:25,621 | INFO     | cat /etc/os-release:
[2026-03-23 19:17:15] NAME="CentOS Linux"
[2026-03-23 19:17:15] VERSION="7 (Core)"
[2026-03-23 19:17:15] ID="centos"
[2026-03-23 19:17:15] ID_LIKE="rhel fedora"
[2026-03-23 19:17:15] VERSION_ID="7"
[2026-03-23 19:17:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-23 19:17:15] ANSI_COLOR="0;31"
[2026-03-23 19:17:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-23 19:17:15] HOME_URL="https://www.centos.org/"
[2026-03-23 19:17:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-23 19:17:15] 
[2026-03-23 19:17:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-23 19:17:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-23 19:17:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-23 19:17:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-23 19:17:15] 
[2026-03-23 19:17:15] 2026-03-23 18:16:25,621 | INFO     | **************************************
[2026-03-23 19:17:15] 2026-03-23 18:16:26,124 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-23 19:17:15] 2026-03-23 18:16:26,134 | INFO     | sufficient remaining disk space (182509895680 B)
[2026-03-23 19:17:15] 2026-03-23 18:16:26,134 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-23 19:17:15] 2026-03-23 18:16:26,134 | INFO     | current server update state: UPDATING_FINAL
[2026-03-23 19:17:15] 2026-03-23 18:16:26,134 | INFO     | update_server=False
[2026-03-23 19:17:15] 2026-03-23 18:16:26,134 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-23 19:17:15] 2026-03-23 18:16:26,134 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-23 19:17:15] 2026-03-23 18:16:26,134 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-23 19:17:15] 2026-03-23 18:16:26,291 | INFO     | all job control threads have been joined
[2026-03-23 19:17:15] 2026-03-23 18:16:26,784 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-23 19:17:15] 2026-03-23 18:16:26,784 | INFO     | aborting loop
[2026-03-23 19:17:15] 2026-03-23 18:16:26,953 | INFO     | all data control threads have been joined
[2026-03-23 19:17:15] 2026-03-23 18:16:27,139 | INFO     | [job] retrieve thread has finished
[2026-03-23 19:17:15] 2026-03-23 18:16:27,139 | INFO     | [job] queue monitor thread has finished
[2026-03-23 19:17:15] 2026-03-23 18:16:27,296 | INFO     | [job] control thread has finished
[2026-03-23 19:17:15] 2026-03-23 18:16:27,384 | INFO     | [payload] validate_post thread has finished
[2026-03-23 19:17:15] 2026-03-23 18:16:27,481 | INFO     | [payload] failed_post thread has finished
[2026-03-23 19:17:15] 2026-03-23 18:16:27,621 | INFO     | all payload control threads have been joined
[2026-03-23 19:17:15] 2026-03-23 18:16:27,737 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-23 19:17:15] 2026-03-23 18:16:27,790 | INFO     | [job] job monitor thread has finished
[2026-03-23 19:17:15] 2026-03-23 18:16:27,959 | INFO     | [data] control thread has finished
[2026-03-23 19:17:15] 2026-03-23 18:16:28,139 | INFO     | [data] copytool_out thread has finished
[2026-03-23 19:17:15] 2026-03-23 18:16:28,285 | INFO     | [job] validate thread has finished
[2026-03-23 19:17:15] 2026-03-23 18:16:28,353 | INFO     | [data] copytool_in thread has finished
[2026-03-23 19:17:15] 2026-03-23 18:16:28,355 | INFO     | [payload] execute_payloads thread has finished
[2026-03-23 19:17:15] 2026-03-23 18:16:28,418 | INFO     | [job] create_data_payload thread has finished
[2026-03-23 19:17:15] 2026-03-23 18:16:28,445 | INFO     | [payload] validate_pre thread has finished
[2026-03-23 19:17:15] 2026-03-23 18:16:28,626 | INFO     | [payload] control thread has finished
[2026-03-23 19:17:15] 2026-03-23 18:16:29,526 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-23 19:17:15] 2026-03-23 18:16:33,531 | INFO     | [data] queue_monitor thread has finished
[2026-03-23 19:17:15] 2026-03-23 18:16:55,700 | INFO     | PID=2818682 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-23 19:17:15] 2026-03-23 18:16:55,700 | INFO     | found 0 job(s) in 20 queues
[2026-03-23 19:17:15] 2026-03-23 18:16:55,700 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-23 19:17:15] 2026-03-23 18:16:55,700 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-23 19:17:15] 2026-03-23 18:17:10,079 | INFO     | [monitor] cgroup control has ended
[2026-03-23 19:17:15] 2026-03-23 18:17:10,538 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140152911513408)>', '<ExcThread(monitor, started 140152265488128)>']
[2026-03-23 19:17:15] 2026-03-23 18:17:10,772 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-23 19:17:15] 2026-03-23 18:17:10,772 | INFO     | [monitor] control thread has ended
[2026-03-23 19:17:15] 2026-03-23 18:17:15,563 | INFO     | all workflow threads have been joined
[2026-03-23 19:17:15] 2026-03-23 18:17:15,563 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-23 19:17:15] 2026-03-23 18:17:15,563 | INFO     | traces error code: 0
[2026-03-23 19:17:15] 2026-03-23 18:17:15,563 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-23 19:17:15] 2026-03-23 18:17:15,604 [wrapper] ==== pilot stdout END ====
[2026-03-23 19:17:15] 2026-03-23 18:17:15,607 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-23 19:17:15] 2026-03-23 18:17:15,609 [wrapper] pilotpid: 2818682
[2026-03-23 19:17:15] 2026-03-23 18:17:15,612 [wrapper] Pilot exit status: 0
[2026-03-23 19:17:15] 2026-03-23 18:17:15,618 [wrapper] pandaids: 7062372608
[2026-03-23 19:17:15] 2026-03-23 18:17:15,634 [wrapper] cleanup supervisor_pilot 2838763 2818683
[2026-03-23 19:17:15] 2026-03-23 18:17:15,636 [wrapper] Test setup, not cleaning
[2026-03-23 19:17:15] 2026-03-23 18:17:15,639 [wrapper] apfmon messages muted
[2026-03-23 19:17:15] 2026-03-23 18:17:15,641 [wrapper] ==== wrapper stdout END ====
[2026-03-23 19:17:15] 2026-03-23 18:17:15,643 [wrapper] ==== wrapper stderr END ====
[2026-03-23 19:17:15]  *** Error codes and diagnostics ***
[2026-03-23 19:17:15]     "exeErrorCode": 0,
[2026-03-23 19:17:15]     "exeErrorDiag": "",
[2026-03-23 19:17:15]     "pilotErrorCode": 0,
[2026-03-23 19:17:15]     "pilotErrorDiag": "",
[2026-03-23 19:17:15]  *** Listing of results directory ***
[2026-03-23 19:17:15] total 474344
[2026-03-23 19:17:15] -rw-r--r-- 1 boinc boinc    585013 Mar 23 00:05 pilot3.tar.gz
[2026-03-23 19:17:15] -rwx------ 1 boinc boinc     36322 Mar 23 00:07 runpilot2-wrapper.sh
[2026-03-23 19:17:15] -rw-r--r-- 1 boinc boinc      5111 Mar 23 00:11 queuedata.json
[2026-03-23 19:17:15] -rw-r--r-- 1 boinc boinc       100 Mar 23 14:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-23 19:17:15] -rwxr-xr-x 1 boinc boinc      7986 Mar 23 14:15 run_atlas
[2026-03-23 19:17:15] -rw-r--r-- 1 boinc boinc       105 Mar 23 14:15 job.xml
[2026-03-23 19:17:15] -rw-r--r-- 2 boinc boinc 234919636 Mar 23 14:15 EVNT.49136696._000006.pool.root.1
[2026-03-23 19:17:15] -rw-r--r-- 2 boinc boinc    597549 Mar 23 14:15 input.tar.gz
[2026-03-23 19:17:15] -rw-r--r-- 2 boinc boinc     15845 Mar 23 14:15 start_atlas.sh
[2026-03-23 19:17:15] drwxrwx--x 2 boinc boinc      4096 Mar 23 14:15 shared
[2026-03-23 19:17:15] -rw-r--r-- 1 boinc boinc         0 Mar 23 14:15 boinc_setup_complete
[2026-03-23 19:17:15] -rw-r--r-- 1 boinc boinc      6207 Mar 23 14:15 init_data.xml
[2026-03-23 19:17:15] -rw-r--r-- 1 boinc boinc         0 Mar 23 14:15 boinc_lockfile
[2026-03-23 19:17:15] -rw-r--r-- 1 boinc boinc      2630 Mar 23 14:15 pandaJob.out
[2026-03-23 19:17:15] -rw------- 1 boinc boinc   1010850 Mar 23 14:15 agis_schedconf.cvmfs.json
[2026-03-23 19:17:15] -rw------- 1 boinc boinc       428 Mar 23 14:15 workernode_map.json
[2026-03-23 19:17:15] drwx------ 5 boinc boinc      4096 Mar 23 14:15 pilot3
[2026-03-23 19:17:15] -rw------- 1 boinc boinc 241015251 Mar 23 19:15 HITS.49182303._000298.pool.root.1
[2026-03-23 19:17:15] -rw-r--r-- 1 boinc boinc       530 Mar 23 19:16 boinc_task_state.xml
[2026-03-23 19:17:15] -rw------- 1 boinc boinc      1017 Mar 23 19:16 memory_monitor_summary.json
[2026-03-23 19:17:15] -rw------- 1 boinc boinc   1511579 Mar 23 19:16 agis_ddmendpoints.agis.ALL.json
[2026-03-23 19:17:15] -rw------- 1 boinc boinc    407517 Mar 23 19:16 log.49182303._000298.job.log.tgz.1
[2026-03-23 19:17:15] -rw------- 1 boinc boinc        95 Mar 23 19:16 pilot_heartbeat.json
[2026-03-23 19:17:15] -rw------- 1 boinc boinc      6309 Mar 23 19:16 heartbeat.json
[2026-03-23 19:17:15] -rw-r--r-- 1 boinc boinc        28 Mar 23 19:17 wrapper_checkpoint.txt
[2026-03-23 19:17:15] -rw-r--r-- 1 boinc boinc      8192 Mar 23 19:17 boinc_mmap_file
[2026-03-23 19:17:15] -rw------- 1 boinc boinc      4748 Mar 23 19:17 pilotlog.txt
[2026-03-23 19:17:15] -rw------- 1 boinc boinc   2523195 Mar 23 19:17 log.49182303._000298.job.log.1
[2026-03-23 19:17:15] -rw------- 1 boinc boinc       357 Mar 23 19:17 output.list
[2026-03-23 19:17:15] -rw-r--r-- 1 boinc boinc       620 Mar 23 19:17 runtime_log
[2026-03-23 19:17:15] -rw------- 1 boinc boinc   2949120 Mar 23 19:17 result.tar.gz
[2026-03-23 19:17:15] -rw-r--r-- 1 boinc boinc      8912 Mar 23 19:17 runtime_log.err
[2026-03-23 19:17:15] -rw------- 1 boinc boinc       664 Mar 23 19:17 rgfNDmE4gO9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmta7LDmOVdpkm.diag
[2026-03-23 19:17:15] -rw-r--r-- 1 boinc boinc     10612 Mar 23 19:17 stderr.txt
[2026-03-23 19:17:15] HITS file was successfully produced:
[2026-03-23 19:17:15] -rw------- 1 boinc boinc 241015251 Mar 23 19:15 shared/HITS.pool.root.1
[2026-03-23 19:17:15]  *** Contents of shared directory: ***
[2026-03-23 19:17:15] total 468272
[2026-03-23 19:17:15] -rw-r--r-- 2 boinc boinc 234919636 Mar 23 14:15 ATLAS.root_0
[2026-03-23 19:17:15] -rw-r--r-- 2 boinc boinc    597549 Mar 23 14:15 input.tar.gz
[2026-03-23 19:17:15] -rw-r--r-- 2 boinc boinc     15845 Mar 23 14:15 start_atlas.sh
[2026-03-23 19:17:15] -rw------- 1 boinc boinc 241015251 Mar 23 19:15 HITS.pool.root.1
[2026-03-23 19:17:15] -rw------- 1 boinc boinc   2949120 Mar 23 19:17 result.tar.gz
19:17:16 (2814652): run_atlas exited; CPU time 35483.873349
19:17:16 (2814652): called boinc_finish(0)

</stderr_txt>
]]>

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