Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:17:38 (2838942): wrapper (7.7.26015): starting
19:17:38 (2838942): wrapper: running run_atlas (--nthreads 2)
[2026-03-23 19:17:38] Arguments: --nthreads 2
[2026-03-23 19:17:38] Threads: 2
[2026-03-23 19:17:38] Checking for CVMFS
[2026-03-23 19:17:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-23 19:17:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-23 19:17:39] Running cvmfs_config stat atlas.cern.ch
[2026-03-23 19:17:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-23 19:17:39] 2.9.2.0 2720343 1485 53596 157612 1 188 26680499 36864000 0 130560 0 291703 99.971 38547 13539 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-23 19:17:39] CVMFS is ok
[2026-03-23 19:17:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-23 19:17:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-23 19:17:39] Further information can be found at the LHC@home message board.
[2026-03-23 19:17:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-23 19:17:39] Checking for apptainer binary...
[2026-03-23 19:17:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-23 19:17:39] Running /usr/bin/apptainer --version
[2026-03-23 19:17:39] apptainer version 1.4.1-1.1
[2026-03-23 19:17:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-23 19:17:39] atlasA219
[2026-03-23 19:17:39] apptainer works
[2026-03-23 19:17:39] Set ATHENA_PROC_NUMBER=2
[2026-03-23 19:17:39] Set ATHENA_CORE_NUMBER=2
[2026-03-23 19:17:39] Starting ATLAS job with PandaID=7062489797
[2026-03-23 19:17:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-23 22:20:11]  *** The last 200 lines of the pilot log: ***
[2026-03-23 22:20:11] 2026-03-23 21:19:36,528 | INFO     | job 7062489797 has completed (purged errors)
[2026-03-23 22:20:11] 2026-03-23 21:19:36,528 | INFO     | overall cleanup function is called
[2026-03-23 22:20:11] 2026-03-23 21:19:36,867 | WARNING  | process 2847394 can no longer be monitored (due to stat problems) - aborting
[2026-03-23 22:20:11] 2026-03-23 21:19:36,901 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-23 22:20:11] 2026-03-23 21:19:36,943 | INFO     | number of running child processes to parent process 2847394: 1
[2026-03-23 22:20:11] 2026-03-23 21:19:36,944 | INFO     | maximum number of monitored processes: 6
[2026-03-23 22:20:11] 2026-03-23 21:19:36,944 | INFO     | aborting job monitoring since job object (job id=7062489797) has expired
[2026-03-23 22:20:11] 2026-03-23 21:19:37,534 | INFO     | --- collectZombieJob: --- 10, [2847394]
[2026-03-23 22:20:11] 2026-03-23 21:19:37,534 | INFO     | zombie collector waiting for pid 2847394
[2026-03-23 22:20:11] 2026-03-23 21:19:37,534 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-23 22:20:11] 2026-03-23 21:19:37,534 | INFO     | collected zombie processes
[2026-03-23 22:20:11] 2026-03-23 21:19:37,534 | INFO     | will attempt to kill all subprocesses of pid=2847394
[2026-03-23 22:20:11] 2026-03-23 21:19:37,575 | INFO     | process IDs to be killed: [2847394] (in reverse order)
[2026-03-23 22:20:11] 2026-03-23 21:19:37,600 | WARNING  | found no corresponding commands to process id(s)
[2026-03-23 22:20:11] 2026-03-23 21:19:37,600 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-23 22:20:11] 2026-03-23 21:19:37,601 | INFO     | did not find any defunct processes belonging to 2847394
[2026-03-23 22:20:11] 2026-03-23 21:19:37,602 | INFO     | did not find any defunct processes belonging to 2847394
[2026-03-23 22:20:11] 2026-03-23 21:19:37,602 | INFO     | ready for new job
[2026-03-23 22:20:11] 2026-03-23 21:19:37,602 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-23 22:20:11] 2026-03-23 21:19:37,602 | INFO     | **************************************
[2026-03-23 22:20:11] 2026-03-23 21:19:37,602 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-23 22:20:11] 2026-03-23 21:19:37,602 | INFO     | **************************************
[2026-03-23 22:20:11] 2026-03-23 21:19:37,603 | INFO     | 
[2026-03-23 22:20:11] 2026-03-23 21:19:37,603 | INFO     | architecture information:
[2026-03-23 22:20:11] 2026-03-23 21:19:37,603 | INFO     | executing command: cat /etc/os-release
[2026-03-23 22:20:11] 2026-03-23 21:19:37,612 | INFO     | cat /etc/os-release:
[2026-03-23 22:20:11] NAME="CentOS Linux"
[2026-03-23 22:20:11] VERSION="7 (Core)"
[2026-03-23 22:20:11] ID="centos"
[2026-03-23 22:20:11] ID_LIKE="rhel fedora"
[2026-03-23 22:20:11] VERSION_ID="7"
[2026-03-23 22:20:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-23 22:20:11] ANSI_COLOR="0;31"
[2026-03-23 22:20:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-23 22:20:11] HOME_URL="https://www.centos.org/"
[2026-03-23 22:20:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-23 22:20:11] 
[2026-03-23 22:20:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-23 22:20:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-23 22:20:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-23 22:20:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-23 22:20:11] 
[2026-03-23 22:20:11] 2026-03-23 21:19:37,612 | INFO     | **************************************
[2026-03-23 22:20:11] 2026-03-23 21:19:38,115 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-23 22:20:11] 2026-03-23 21:19:38,125 | INFO     | sufficient remaining disk space (182491021312 B)
[2026-03-23 22:20:11] 2026-03-23 21:19:38,125 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-23 22:20:11] 2026-03-23 21:19:38,125 | INFO     | current server update state: UPDATING_FINAL
[2026-03-23 22:20:11] 2026-03-23 21:19:38,125 | INFO     | update_server=False
[2026-03-23 22:20:11] 2026-03-23 21:19:38,125 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-23 22:20:11] 2026-03-23 21:19:38,126 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-23 22:20:11] 2026-03-23 21:19:38,126 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-23 22:20:11] 2026-03-23 21:19:38,126 | INFO     | aborting loop
[2026-03-23 22:20:11] 2026-03-23 21:19:38,126 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-23 22:20:11] 2026-03-23 21:19:38,409 | INFO     | all data control threads have been joined
[2026-03-23 22:20:11] 2026-03-23 21:19:38,868 | INFO     | all job control threads have been joined
[2026-03-23 22:20:11] 2026-03-23 21:19:38,902 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-23 22:20:11] 2026-03-23 21:19:38,949 | INFO     | all payload control threads have been joined
[2026-03-23 22:20:11] 2026-03-23 21:19:39,130 | INFO     | [job] job monitor thread has finished
[2026-03-23 22:20:11] 2026-03-23 21:19:39,131 | INFO     | [job] retrieve thread has finished
[2026-03-23 22:20:11] 2026-03-23 21:19:39,131 | INFO     | [job] queue monitor thread has finished
[2026-03-23 22:20:11] 2026-03-23 21:19:39,410 | INFO     | [data] control thread has finished
[2026-03-23 22:20:11] 2026-03-23 21:19:39,592 | INFO     | [payload] validate_post thread has finished
[2026-03-23 22:20:11] 2026-03-23 21:19:39,610 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-23 22:20:11] 2026-03-23 21:19:39,873 | INFO     | [job] control thread has finished
[2026-03-23 22:20:11] 2026-03-23 21:19:39,954 | INFO     | [payload] control thread has finished
[2026-03-23 22:20:11] 2026-03-23 21:19:39,984 | INFO     | [job] create_data_payload thread has finished
[2026-03-23 22:20:11] 2026-03-23 21:19:40,004 | INFO     | [job] validate thread has finished
[2026-03-23 22:20:11] 2026-03-23 21:19:40,251 | INFO     | [payload] execute_payloads thread has finished
[2026-03-23 22:20:11] 2026-03-23 21:19:40,266 | INFO     | [payload] validate_pre thread has finished
[2026-03-23 22:20:11] 2026-03-23 21:19:40,285 | INFO     | [data] copytool_in thread has finished
[2026-03-23 22:20:11] 2026-03-23 21:19:40,675 | INFO     | [payload] failed_post thread has finished
[2026-03-23 22:20:11] 2026-03-23 21:19:40,907 | INFO     | [data] copytool_out thread has finished
[2026-03-23 22:20:11] 2026-03-23 21:19:42,131 | INFO     | [data] queue_monitor thread has finished
[2026-03-23 22:20:11] 2026-03-23 21:20:04,847 | INFO     | [monitor] cgroup control has ended
[2026-03-23 22:20:11] 2026-03-23 21:20:06,618 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140470975989568)>', '<ExcThread(monitor, started 140470109853440)>']
[2026-03-23 22:20:11] 2026-03-23 21:20:08,628 | INFO     | PID=2842968 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-23 22:20:11] 2026-03-23 21:20:08,628 | INFO     | found 0 job(s) in 20 queues
[2026-03-23 22:20:11] 2026-03-23 21:20:08,628 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-23 22:20:11] 2026-03-23 21:20:08,628 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-23 22:20:11] 2026-03-23 21:20:08,628 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-23 22:20:11] 2026-03-23 21:20:08,628 | INFO     | [monitor] control thread has ended
[2026-03-23 22:20:11] 2026-03-23 21:20:11,644 | INFO     | all workflow threads have been joined
[2026-03-23 22:20:11] 2026-03-23 21:20:11,644 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-23 22:20:11] 2026-03-23 21:20:11,644 | INFO     | traces error code: 0
[2026-03-23 22:20:11] 2026-03-23 21:20:11,644 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-23 22:20:11] 2026-03-23 21:20:11,686 [wrapper] ==== pilot stdout END ====
[2026-03-23 22:20:11] 2026-03-23 21:20:11,689 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-23 22:20:11] 2026-03-23 21:20:11,691 [wrapper] pilotpid: 2842968
[2026-03-23 22:20:11] 2026-03-23 21:20:11,694 [wrapper] Pilot exit status: 0
[2026-03-23 22:20:11] 2026-03-23 21:20:11,700 [wrapper] pandaids: 7062489797
[2026-03-23 22:20:11] 2026-03-23 21:20:11,716 [wrapper] cleanup supervisor_pilot 2858571 2842969
[2026-03-23 22:20:11] 2026-03-23 21:20:11,719 [wrapper] Test setup, not cleaning
[2026-03-23 22:20:11] 2026-03-23 21:20:11,721 [wrapper] apfmon messages muted
[2026-03-23 22:20:11] 2026-03-23 21:20:11,723 [wrapper] ==== wrapper stdout END ====
[2026-03-23 22:20:11] 2026-03-23 21:20:11,725 [wrapper] ==== wrapper stderr END ====
[2026-03-23 22:20:11]  *** Error codes and diagnostics ***
[2026-03-23 22:20:11]     "exeErrorCode": 0,
[2026-03-23 22:20:11]     "exeErrorDiag": "",
[2026-03-23 22:20:11]     "pilotErrorCode": 0,
[2026-03-23 22:20:11]     "pilotErrorDiag": "",
[2026-03-23 22:20:11]  *** Listing of results directory ***
[2026-03-23 22:20:11] total 446772
[2026-03-23 22:20:11] -rw-r--r-- 1 boinc boinc    585013 Mar 23 00:05 pilot3.tar.gz
[2026-03-23 22:20:11] -rwx------ 1 boinc boinc     36322 Mar 23 00:51 runpilot2-wrapper.sh
[2026-03-23 22:20:11] -rw-r--r-- 1 boinc boinc      5111 Mar 23 00:52 queuedata.json
[2026-03-23 22:20:11] -rw-r--r-- 1 boinc boinc       100 Mar 23 19:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-23 22:20:11] -rwxr-xr-x 1 boinc boinc      7986 Mar 23 19:17 run_atlas
[2026-03-23 22:20:11] -rw-r--r-- 1 boinc boinc       105 Mar 23 19:17 job.xml
[2026-03-23 22:20:11] -rw-r--r-- 2 boinc boinc 247847520 Mar 23 19:17 EVNT.49131517._000001.pool.root.1
[2026-03-23 22:20:11] drwxrwx--x 2 boinc boinc      4096 Mar 23 19:17 shared
[2026-03-23 22:20:11] -rw-r--r-- 2 boinc boinc    597532 Mar 23 19:17 input.tar.gz
[2026-03-23 22:20:11] -rw-r--r-- 2 boinc boinc     15845 Mar 23 19:17 start_atlas.sh
[2026-03-23 22:20:11] -rw-r--r-- 1 boinc boinc         0 Mar 23 19:17 boinc_setup_complete
[2026-03-23 22:20:11] -rw-r--r-- 1 boinc boinc      6207 Mar 23 19:17 init_data.xml
[2026-03-23 22:20:11] -rw-r--r-- 1 boinc boinc         0 Mar 23 19:17 boinc_lockfile
[2026-03-23 22:20:11] -rw-r--r-- 1 boinc boinc      2580 Mar 23 19:17 pandaJob.out
[2026-03-23 22:20:11] -rw------- 1 boinc boinc   1010850 Mar 23 19:17 agis_schedconf.cvmfs.json
[2026-03-23 22:20:11] -rw------- 1 boinc boinc       428 Mar 23 19:17 workernode_map.json
[2026-03-23 22:20:11] drwx------ 5 boinc boinc      4096 Mar 23 19:17 pilot3
[2026-03-23 22:20:11] -rw------- 1 boinc boinc 201993489 Mar 23 22:19 HITS.49274458._000030.pool.root.1
[2026-03-23 22:20:11] -rw-r--r-- 1 boinc boinc       530 Mar 23 22:19 boinc_task_state.xml
[2026-03-23 22:20:11] -rw------- 1 boinc boinc      1029 Mar 23 22:19 memory_monitor_summary.json
[2026-03-23 22:20:11] -rw------- 1 boinc boinc   1511579 Mar 23 22:19 agis_ddmendpoints.agis.ALL.json
[2026-03-23 22:20:11] -rw------- 1 boinc boinc    314129 Mar 23 22:19 log.49274458._000030.job.log.tgz.1
[2026-03-23 22:20:11] -rw------- 1 boinc boinc      6295 Mar 23 22:19 heartbeat.json
[2026-03-23 22:20:11] -rw-r--r-- 1 boinc boinc        28 Mar 23 22:20 wrapper_checkpoint.txt
[2026-03-23 22:20:11] -rw-r--r-- 1 boinc boinc      8192 Mar 23 22:20 boinc_mmap_file
[2026-03-23 22:20:11] -rw------- 1 boinc boinc        95 Mar 23 22:20 pilot_heartbeat.json
[2026-03-23 22:20:11] -rw------- 1 boinc boinc      4748 Mar 23 22:20 pilotlog.txt
[2026-03-23 22:20:11] -rw------- 1 boinc boinc   1547918 Mar 23 22:20 log.49274458._000030.job.log.1
[2026-03-23 22:20:11] -rw------- 1 boinc boinc       357 Mar 23 22:20 output.list
[2026-03-23 22:20:11] -rw-r--r-- 1 boinc boinc       620 Mar 23 22:20 runtime_log
[2026-03-23 22:20:11] -rw------- 1 boinc boinc   1884160 Mar 23 22:20 result.tar.gz
[2026-03-23 22:20:11] -rw-r--r-- 1 boinc boinc      8912 Mar 23 22:20 runtime_log.err
[2026-03-23 22:20:11] -rw------- 1 boinc boinc       664 Mar 23 22:20 P8WNDmBlhO9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmLm7LDm8KrUyn.diag
[2026-03-23 22:20:11] -rw-r--r-- 1 boinc boinc     11443 Mar 23 22:20 stderr.txt
[2026-03-23 22:20:11] HITS file was successfully produced:
[2026-03-23 22:20:11] -rw------- 1 boinc boinc 201993489 Mar 23 22:19 shared/HITS.pool.root.1
[2026-03-23 22:20:11]  *** Contents of shared directory: ***
[2026-03-23 22:20:11] total 441748
[2026-03-23 22:20:11] -rw-r--r-- 2 boinc boinc 247847520 Mar 23 19:17 ATLAS.root_0
[2026-03-23 22:20:11] -rw-r--r-- 2 boinc boinc    597532 Mar 23 19:17 input.tar.gz
[2026-03-23 22:20:11] -rw-r--r-- 2 boinc boinc     15845 Mar 23 19:17 start_atlas.sh
[2026-03-23 22:20:11] -rw------- 1 boinc boinc 201993489 Mar 23 22:19 HITS.pool.root.1
[2026-03-23 22:20:11] -rw------- 1 boinc boinc   1884160 Mar 23 22:20 result.tar.gz
22:20:13 (2838942): run_atlas exited; CPU time 21258.210924
22:20:13 (2838942): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN