Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:30:24 (5970): wrapper (7.7.26015): starting
00:30:24 (5970): wrapper: running run_atlas (--nthreads 8)
[2026-03-24 00:30:24] Arguments: --nthreads 8
[2026-03-24 00:30:24] Threads: 8
[2026-03-24 00:30:24] Checking for CVMFS
[2026-03-24 00:30:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-24 00:30:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-24 00:30:29] Running cvmfs_config stat atlas.cern.ch
[2026-03-24 00:30:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-24 00:30:31] 2.11.2.0 9669 141198 131120 157618 0 53 22907751 25165825 4520 130560 151 42159874 99.838 34092606 1104 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-24 00:30:31] CVMFS is ok
[2026-03-24 00:30:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-24 00:30:31] Checking for apptainer binary...
[2026-03-24 00:30:31] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-24 00:30:31] Running /usr/bin/apptainer --version
[2026-03-24 00:30:31] apptainer version 1.3.2-1.el7
[2026-03-24 00:30:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-24 00:30:41] cg-vwn394.simple-grid.lan
[2026-03-24 00:30:41] apptainer works
[2026-03-24 00:30:41] Set ATHENA_PROC_NUMBER=8
[2026-03-24 00:30:41] Set ATHENA_CORE_NUMBER=8
[2026-03-24 00:30:41] Starting ATLAS job with PandaID=7062364321
[2026-03-24 00:30:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-24 12:39:24]  *** The last 200 lines of the pilot log: ***
[2026-03-24 12:39:24] 2026-03-24 11:38:28,184 | INFO     | preparing for final server update for job 7062364321 in state='finished'
[2026-03-24 12:39:24] 2026-03-24 11:38:28,184 | INFO     | reading metadata from: /var/lib/boinc/slots/11/PanDA_Pilot-7062364321/jobReport.json
[2026-03-24 12:39:24] 2026-03-24 11:38:28,187 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/11/workernode_map.json
[2026-03-24 12:39:24] 2026-03-24 11:38:28,187 | INFO     | this job has now completed (state=finished)
[2026-03-24 12:39:24] 2026-03-24 11:38:28,187 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-24 12:39:24] 2026-03-24 11:38:28,187 | INFO     | log transfer has been attempted: DONE
[2026-03-24 12:39:24] 2026-03-24 11:38:28,188 | INFO     | job 7062364321 has finished - writing final server update
[2026-03-24 12:39:24] 2026-03-24 11:38:28,188 | INFO     | total number of processed events: 400 (read)
[2026-03-24 12:39:24] 2026-03-24 11:38:28,190 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-7062364321/memory_monitor_summary.json (trf name=prmon)
[2026-03-24 12:39:24] 2026-03-24 11:38:28,191 | INFO     | extracted standard info from prmon json
[2026-03-24 12:39:24] 2026-03-24 11:38:28,191 | INFO     | extracted standard memory fields from prmon json
[2026-03-24 12:39:24] 2026-03-24 11:38:28,191 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-24 12:39:24] 2026-03-24 11:38:28,191 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-24 12:39:24] 2026-03-24 11:38:28,192 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-24 12:39:24] 2026-03-24 11:38:28,204 | INFO     | fitting pss+swap vs Time
[2026-03-24 12:39:24] 2026-03-24 11:38:28,207 | INFO     | sum of square deviations: 109116808692.5
[2026-03-24 12:39:24] 2026-03-24 11:38:28,224 | INFO     | sum of deviations: 412682186414.50006
[2026-03-24 12:39:24] 2026-03-24 11:38:28,224 | INFO     | mean x: 1774330746.5
[2026-03-24 12:39:24] 2026-03-24 11:38:28,224 | INFO     | mean y: 2500749.692634561
[2026-03-24 12:39:24] 2026-03-24 11:38:28,225 | INFO     | intersect: -6708057418.770564
[2026-03-24 12:39:24] 2026-03-24 11:38:28,225 | INFO     | chi2: 4.352637137897
[2026-03-24 12:39:24] 2026-03-24 11:38:28,227 | INFO     | sum of square deviations: 106814839950.0
[2026-03-24 12:39:24] 2026-03-24 11:38:28,244 | INFO     | sum of deviations: 456323761095.00006
[2026-03-24 12:39:24] 2026-03-24 11:38:28,244 | INFO     | mean x: 1774330594.0
[2026-03-24 12:39:24] 2026-03-24 11:38:28,244 | INFO     | mean y: 2503622.7960057063
[2026-03-24 12:39:24] 2026-03-24 11:38:28,245 | INFO     | intersect: -7577615492.291482
[2026-03-24 12:39:24] 2026-03-24 11:38:28,246 | INFO     | chi2: 3.5874057495814617
[2026-03-24 12:39:24] 2026-03-24 11:38:28,246 | INFO     | current chi2=3.5874057495814617 (change=17.58086796744247 %)
[2026-03-24 12:39:24] 2026-03-24 11:38:28,246 | INFO     | right removable region: 700
[2026-03-24 12:39:24] 2026-03-24 11:38:28,247 | INFO     | sum of square deviations: 106814839950.0
[2026-03-24 12:39:24] 2026-03-24 11:38:28,268 | INFO     | sum of deviations: 200846282427.0
[2026-03-24 12:39:24] 2026-03-24 11:38:28,268 | INFO     | mean x: 1774330899.0
[2026-03-24 12:39:24] 2026-03-24 11:38:28,268 | INFO     | mean y: 2514773.0641940087
[2026-03-24 12:39:24] 2026-03-24 11:38:28,268 | INFO     | intersect: -3333798467.9266877
[2026-03-24 12:39:24] 2026-03-24 11:38:28,269 | INFO     | chi2: 1.1201118926227611
[2026-03-24 12:39:24] 2026-03-24 11:38:28,269 | INFO     | current chi2=1.1201118926227611 (change=74.26590232228848 %)
[2026-03-24 12:39:24] 2026-03-24 11:38:28,270 | INFO     | sum of square deviations: 104545476470.0
[2026-03-24 12:39:24] 2026-03-24 11:38:28,287 | INFO     | sum of deviations: 150449499213.0
[2026-03-24 12:39:24] 2026-03-24 11:38:28,288 | INFO     | mean x: 1774331051.5
[2026-03-24 12:39:24] 2026-03-24 11:38:28,288 | INFO     | mean y: 2518155.7988505745
[2026-03-24 12:39:24] 2026-03-24 11:38:28,288 | INFO     | intersect: -2550889482.195443
[2026-03-24 12:39:24] 2026-03-24 11:38:28,289 | INFO     | chi2: 0.9490089164584379
[2026-03-24 12:39:24] 2026-03-24 11:38:28,289 | INFO     | current chi2=0.9490089164584379 (change=15.275525355210961 %)
[2026-03-24 12:39:24] 2026-03-24 11:38:28,289 | INFO     | left removable region: 20
[2026-03-24 12:39:24] 2026-03-24 11:38:28,290 | INFO     | sum of square deviations: 97499911810.0
[2026-03-24 12:39:24] 2026-03-24 11:38:28,303 | INFO     | sum of deviations: 130716529364.00002
[2026-03-24 12:39:24] 2026-03-24 11:38:28,304 | INFO     | mean x: 1774331173.5
[2026-03-24 12:39:24] 2026-03-24 11:38:28,304 | INFO     | mean y: 2525624.305882353
[2026-03-24 12:39:24] 2026-03-24 11:38:28,304 | INFO     | intersect: -2376291019.079893
[2026-03-24 12:39:24] 2026-03-24 11:38:28,305 | INFO     | chi2: 0.012721275425571686
[2026-03-24 12:39:24] 2026-03-24 11:38:28,305 | INFO     | current memory leak: 1.34 B/s (using 680 data points, chi2=0.01)
[2026-03-24 12:39:24] 2026-03-24 11:38:28,306 | INFO     | could have reported an average CPU frequency of 1999 MHz (28 samples)
[2026-03-24 12:39:24] 2026-03-24 11:38:28,306 | INFO     | ..............................
[2026-03-24 12:39:24] 2026-03-24 11:38:28,306 | INFO     | . Timing measurements:
[2026-03-24 12:39:24] 2026-03-24 11:38:28,307 | INFO     | . get job = 0 s
[2026-03-24 12:39:24] 2026-03-24 11:38:28,307 | INFO     | . initial setup = 103 s
[2026-03-24 12:39:24] 2026-03-24 11:38:28,307 | INFO     | . payload setup = 156 s
[2026-03-24 12:39:24] 2026-03-24 11:38:28,307 | INFO     | . stage-in = 0 s
[2026-03-24 12:39:24] 2026-03-24 11:38:28,307 | INFO     | . payload execution = 43169 s
[2026-03-24 12:39:24] 2026-03-24 11:38:28,307 | INFO     | . stage-out = 4 s
[2026-03-24 12:39:24] 2026-03-24 11:38:28,309 | INFO     | . log creation = 1 s
[2026-03-24 12:39:24] 2026-03-24 11:38:28,309 | INFO     | ..............................
[2026-03-24 12:39:24] 2026-03-24 11:38:28,318 | INFO     | time since job start (43350s) is within the limit (345600.0s)
[2026-03-24 12:39:24] 2026-03-24 11:38:28,325 | INFO     | 43453s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-03-24 12:39:24] 2026-03-24 11:38:28,856 | INFO     | 
[2026-03-24 12:39:24] 2026-03-24 11:38:28,856 | INFO     | job summary report
[2026-03-24 12:39:24] 2026-03-24 11:38:28,857 | INFO     | --------------------------------------------------
[2026-03-24 12:39:24] 2026-03-24 11:38:28,857 | INFO     | PanDA job id: 7062364321
[2026-03-24 12:39:24] 2026-03-24 11:38:28,857 | INFO     | task id: 49178033
[2026-03-24 12:39:24] 2026-03-24 11:38:28,857 | INFO     | errors: (none)
[2026-03-24 12:39:24] 2026-03-24 11:38:28,857 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-24 12:39:24] 2026-03-24 11:38:28,857 | INFO     | pilot state: finished 
[2026-03-24 12:39:24] 2026-03-24 11:38:28,857 | INFO     | transexitcode: 0
[2026-03-24 12:39:24] 2026-03-24 11:38:28,857 | INFO     | exeerrorcode: 0
[2026-03-24 12:39:24] 2026-03-24 11:38:28,857 | INFO     | exeerrordiag: 
[2026-03-24 12:39:24] 2026-03-24 11:38:28,858 | INFO     | exitcode: 0
[2026-03-24 12:39:24] 2026-03-24 11:38:28,858 | INFO     | exitmsg: OK
[2026-03-24 12:39:24] 2026-03-24 11:38:28,858 | INFO     | cpuconsumptiontime: 171362 s
[2026-03-24 12:39:24] 2026-03-24 11:38:28,858 | INFO     | nevents: 400
[2026-03-24 12:39:24] 2026-03-24 11:38:28,858 | INFO     | neventsw: 0
[2026-03-24 12:39:24] 2026-03-24 11:38:28,858 | INFO     | pid: 14611
[2026-03-24 12:39:24] 2026-03-24 11:38:28,858 | INFO     | pgrp: 14611
[2026-03-24 12:39:24] 2026-03-24 11:38:28,858 | INFO     | corecount: 8
[2026-03-24 12:39:24] 2026-03-24 11:38:28,858 | INFO     | event service: False
[2026-03-24 12:39:24] 2026-03-24 11:38:28,858 | INFO     | sizes: {0: 2279149, 1: 2279835, 2: 2280296, 13: 2280296, 43329: 2323891, 43330: 2323890, 43335: 2333130, 43337: 2333268}
[2026-03-24 12:39:24] 2026-03-24 11:38:28,859 | INFO     | --------------------------------------------------
[2026-03-24 12:39:24] 2026-03-24 11:38:28,859 | INFO     | 
[2026-03-24 12:39:24] 2026-03-24 11:38:28,859 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2026-03-24 12:39:24] 2026-03-24 11:38:29,318 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-24 12:39:24] 2026-03-24 11:38:29,318 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-24 12:39:24] 2026-03-24 11:38:29,318 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-24 12:39:24] 2026-03-24 11:38:29,318 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-24 12:39:24] 2026-03-24 11:38:29,319 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-24 12:39:24] 2026-03-24 11:38:29,319 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-24 12:39:24] 2026-03-24 11:38:29,319 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-24 12:39:24] 2026-03-24 11:38:29,319 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-24 12:39:24] 2026-03-24 11:38:29,319 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-24 12:39:24] 2026-03-24 11:38:29,319 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-24 12:39:24] 2026-03-24 11:38:29,319 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-24 12:39:24] 2026-03-24 11:38:29,319 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-24 12:39:24] 2026-03-24 11:38:29,319 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-24 12:39:24] 2026-03-24 11:38:29,319 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-24 12:39:24] 2026-03-24 11:38:29,320 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-24 12:39:24] 2026-03-24 11:38:29,320 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-24 12:39:24] 2026-03-24 11:38:29,320 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-24 12:39:24] 2026-03-24 11:38:29,320 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-24 12:39:24] 2026-03-24 11:38:29,320 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-24 12:39:24] 2026-03-24 11:38:29,320 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-24 12:39:24] 2026-03-24 11:38:29,320 | INFO     | job 7062364321 has completed (purged errors)
[2026-03-24 12:39:24] 2026-03-24 11:38:29,320 | INFO     | overall cleanup function is called
[2026-03-24 12:39:24] 2026-03-24 11:38:30,329 | INFO     | --- collectZombieJob: --- 10, [14611]
[2026-03-24 12:39:24] 2026-03-24 11:38:30,329 | INFO     | zombie collector waiting for pid 14611
[2026-03-24 12:39:24] 2026-03-24 11:38:30,329 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-24 12:39:24] 2026-03-24 11:38:30,329 | INFO     | collected zombie processes
[2026-03-24 12:39:24] 2026-03-24 11:38:30,329 | INFO     | will attempt to kill all subprocesses of pid=14611
[2026-03-24 12:39:24] 2026-03-24 11:38:30,425 | INFO     | process IDs to be killed: [14611] (in reverse order)
[2026-03-24 12:39:24] 2026-03-24 11:38:31,084 | WARNING  | found no corresponding commands to process id(s)
[2026-03-24 12:39:24] 2026-03-24 11:38:31,084 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-24 12:39:24] 2026-03-24 11:38:31,087 | INFO     | did not find any defunct processes belonging to 14611
[2026-03-24 12:39:24] 2026-03-24 11:38:31,090 | INFO     | did not find any defunct processes belonging to 14611
[2026-03-24 12:39:24] 2026-03-24 11:38:31,090 | INFO     | ready for new job
[2026-03-24 12:39:24] 2026-03-24 11:38:31,091 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-24 12:39:24] 2026-03-24 11:38:31,097 | INFO     | **************************************
[2026-03-24 12:39:24] 2026-03-24 11:38:31,097 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-24 12:39:24] 2026-03-24 11:38:31,097 | INFO     | **************************************
[2026-03-24 12:39:24] 2026-03-24 11:38:31,098 | INFO     | 
[2026-03-24 12:39:24] 2026-03-24 11:38:31,098 | INFO     | pilot is running in a VM
[2026-03-24 12:39:24] 2026-03-24 11:38:31,098 | INFO     | architecture information:
[2026-03-24 12:39:24] 2026-03-24 11:38:31,106 | INFO     | executing command: cat /etc/os-release
[2026-03-24 12:39:24] 2026-03-24 11:38:31,455 | INFO     | cat /etc/os-release:
[2026-03-24 12:39:24] NAME="CentOS Linux"
[2026-03-24 12:39:24] VERSION="7 (Core)"
[2026-03-24 12:39:24] ID="centos"
[2026-03-24 12:39:24] ID_LIKE="rhel fedora"
[2026-03-24 12:39:24] VERSION_ID="7"
[2026-03-24 12:39:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-24 12:39:24] ANSI_COLOR="0;31"
[2026-03-24 12:39:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-24 12:39:24] HOME_URL="https://www.centos.org/"
[2026-03-24 12:39:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-24 12:39:24] 
[2026-03-24 12:39:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-24 12:39:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-24 12:39:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-24 12:39:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-24 12:39:24] 
[2026-03-24 12:39:24] 2026-03-24 11:38:31,455 | INFO     | **************************************
[2026-03-24 12:39:24] 2026-03-24 11:38:31,958 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2026-03-24 12:39:24] 2026-03-24 11:38:32,176 | INFO     | sufficient remaining disk space (494791557120 B)
[2026-03-24 12:39:24] 2026-03-24 11:38:32,176 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-24 12:39:24] 2026-03-24 11:38:32,176 | INFO     | current server update state: UPDATING_FINAL
[2026-03-24 12:39:24] 2026-03-24 11:38:32,176 | INFO     | update_server=False
[2026-03-24 12:39:24] 2026-03-24 11:38:32,176 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-24 12:39:24] 2026-03-24 11:38:32,179 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-24 12:39:24] 2026-03-24 11:38:32,281 | INFO     | all payload control threads have been joined
[2026-03-24 12:39:24] 2026-03-24 11:38:32,289 | INFO     | all data control threads have been joined
[2026-03-24 12:39:24] 2026-03-24 11:38:32,352 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-24 12:39:24] 2026-03-24 11:38:32,644 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-24 12:39:24] 2026-03-24 11:38:32,644 | INFO     | aborting loop
[2026-03-24 12:39:24] 2026-03-24 11:38:33,041 | INFO     | all job control threads have been joined
[2026-03-24 12:39:24] 2026-03-24 11:38:33,181 | INFO     | [job] retrieve thread has finished
[2026-03-24 12:39:24] 2026-03-24 11:38:33,276 | INFO     | [payload] validate_post thread has finished
[2026-03-24 12:39:24] 2026-03-24 11:38:33,287 | INFO     | [payload] control thread has finished
[2026-03-24 12:39:24] 2026-03-24 11:38:33,294 | INFO     | [data] control thread has finished
[2026-03-24 12:39:24] 2026-03-24 11:38:33,441 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-24 12:39:24] 2026-03-24 11:38:33,584 | INFO     | [payload] execute_payloads thread has finished
[2026-03-24 12:39:24] 2026-03-24 11:38:33,587 | INFO     | [job] create_data_payload thread has finished
[2026-03-24 12:39:24] 2026-03-24 11:38:33,649 | INFO     | [job] job monitor thread has finished
[2026-03-24 12:39:24] 2026-03-24 11:38:33,681 | INFO     | [data] copytool_in thread has finished
[2026-03-24 12:39:24] 2026-03-24 11:38:34,028 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-24 12:39:24] 2026-03-24 11:38:34,047 | INFO     | [job] control thread has finished
[2026-03-24 12:39:24] 2026-03-24 11:38:34,175 | INFO     | [payload] failed_post thread has finished
[2026-03-24 12:39:24] 2026-03-24 11:38:34,186 | INFO     | [data] copytool_out thread has finished
[2026-03-24 12:39:24] 2026-03-24 11:38:34,307 | INFO     | [job] validate thread has finished
[2026-03-24 12:39:24] 2026-03-24 11:38:34,446 | INFO     | [job] queue monitor thread has finished
[2026-03-24 12:39:24] 2026-03-24 11:38:34,569 | INFO     | [payload] validate_pre thread has finished
[2026-03-24 12:39:24] 2026-03-24 11:38:36,361 | INFO     | [data] queue_monitor thread has finished
[2026-03-24 12:39:24] 2026-03-24 11:39:01,530 | INFO     | PID=10122 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-24 12:39:24] 2026-03-24 11:39:01,530 | INFO     | .. there are 9 such processes running
[2026-03-24 12:39:24] 2026-03-24 11:39:01,531 | INFO     | found 0 job(s) in 20 queues
[2026-03-24 12:39:24] 2026-03-24 11:39:01,531 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-24 12:39:24] 2026-03-24 11:39:01,531 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-24 12:39:24] 2026-03-24 11:39:13,484 | INFO     | [monitor] cgroup control has ended
[2026-03-24 12:39:24] 2026-03-24 11:39:15,102 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140579165480768)>', '<ExcThread(monitor, started 140578876536576)>']
[2026-03-24 12:39:24] 2026-03-24 11:39:15,613 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-24 12:39:24] 2026-03-24 11:39:15,613 | INFO     | [monitor] control thread has ended
[2026-03-24 12:39:24] 2026-03-24 11:39:20,128 | INFO     | all workflow threads have been joined
[2026-03-24 12:39:24] 2026-03-24 11:39:20,128 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-24 12:39:24] 2026-03-24 11:39:20,129 | INFO     | traces error code: 0
[2026-03-24 12:39:24] 2026-03-24 11:39:20,129 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-24 12:39:24] 2026-03-24 11:39:20,344 [wrapper] ==== pilot stdout END ====
[2026-03-24 12:39:24] 2026-03-24 11:39:20,362 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-24 12:39:24] 2026-03-24 11:39:20,419 [wrapper] pilotpid: 10122
[2026-03-24 12:39:24] 2026-03-24 11:39:20,496 [wrapper] Pilot exit status: 0
[2026-03-24 12:39:24] 2026-03-24 11:39:21,054 [wrapper] pandaids: 7062364321
[2026-03-24 12:39:24] 2026-03-24 11:39:21,947 [wrapper] cleanup supervisor_pilot 12475 10123
[2026-03-24 12:39:24] 2026-03-24 11:39:22,028 [wrapper] Test setup, not cleaning
[2026-03-24 12:39:24] 2026-03-24 11:39:22,085 [wrapper] apfmon messages muted
[2026-03-24 12:39:24] 2026-03-24 11:39:22,155 [wrapper] ==== wrapper stdout END ====
[2026-03-24 12:39:24] 2026-03-24 11:39:22,228 [wrapper] ==== wrapper stderr END ====
[2026-03-24 12:39:24]  *** Error codes and diagnostics ***
[2026-03-24 12:39:24]     "exeErrorCode": 0,
[2026-03-24 12:39:24]     "exeErrorDiag": "",
[2026-03-24 12:39:24]     "pilotErrorCode": 0,
[2026-03-24 12:39:24]     "pilotErrorDiag": "",
[2026-03-24 12:39:24]  *** Listing of results directory ***
[2026-03-24 12:39:24] total 506316
[2026-03-24 12:39:24] -rw-r--r--. 1 boinc boinc    585013 Mar 23 00:05 pilot3.tar.gz
[2026-03-24 12:39:24] -rwx------. 1 boinc boinc     36322 Mar 23 00:07 runpilot2-wrapper.sh
[2026-03-24 12:39:24] -rw-r--r--. 1 boinc boinc      5111 Mar 23 00:09 queuedata.json
[2026-03-24 12:39:24] -rw-r--r--. 1 boinc boinc       100 Mar 24 00:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-24 12:39:24] -rwxr-xr-x. 1 boinc boinc      7986 Mar 24 00:30 run_atlas
[2026-03-24 12:39:24] -rw-r--r--. 1 boinc boinc       105 Mar 24 00:30 job.xml
[2026-03-24 12:39:24] -rw-r--r--. 2 boinc boinc 245523552 Mar 24 00:30 EVNT.49127910._000027.pool.root.1
[2026-03-24 12:39:24] -rw-r--r--. 2 boinc boinc    597550 Mar 24 00:30 input.tar.gz
[2026-03-24 12:39:24] -rw-r--r--. 1 boinc boinc      6392 Mar 24 00:30 init_data.xml
[2026-03-24 12:39:24] -rw-r--r--. 2 boinc boinc     15845 Mar 24 00:30 start_atlas.sh
[2026-03-24 12:39:24] drwxrwx--x. 2 boinc boinc        68 Mar 24 00:30 shared
[2026-03-24 12:39:24] -rw-r--r--. 1 boinc boinc         0 Mar 24 00:30 boinc_lockfile
[2026-03-24 12:39:24] -rw-r--r--. 1 boinc boinc      2605 Mar 24 00:30 pandaJob.out
[2026-03-24 12:39:24] -rw-------. 1 boinc boinc       415 Mar 24 00:35 workernode_map.json
[2026-03-24 12:39:24] -rw-------. 1 boinc boinc   1010851 Mar 24 00:35 agis_schedconf.cvmfs.json
[2026-03-24 12:39:24] drwx------. 5 boinc boinc      4096 Mar 24 00:35 pilot3
[2026-03-24 12:39:24] -rw-------. 1 boinc boinc 255225533 Mar 24 12:36 HITS.49178033._001235.pool.root.1
[2026-03-24 12:39:24] -rw-r--r--. 1 boinc boinc       531 Mar 24 12:37 boinc_task_state.xml
[2026-03-24 12:39:24] -rw-------. 1 boinc boinc      1016 Mar 24 12:38 memory_monitor_summary.json
[2026-03-24 12:39:24] -rw-------. 1 boinc boinc   1511579 Mar 24 12:38 agis_ddmendpoints.agis.ALL.json
[2026-03-24 12:39:24] -rw-------. 1 boinc boinc    873157 Mar 24 12:38 log.49178033._001235.job.log.tgz.1
[2026-03-24 12:39:24] -rw-------. 1 boinc boinc      6314 Mar 24 12:38 heartbeat.json
[2026-03-24 12:39:24] -rw-------. 1 boinc boinc        95 Mar 24 12:39 pilot_heartbeat.json
[2026-03-24 12:39:24] -rw-r--r--. 1 boinc boinc      8192 Mar 24 12:39 boinc_mmap_file
[2026-03-24 12:39:24] -rw-r--r--. 1 boinc boinc        29 Mar 24 12:39 wrapper_checkpoint.txt
[2026-03-24 12:39:24] -rw-------. 1 boinc boinc      4881 Mar 24 12:39 pilotlog.txt
[2026-03-24 12:39:24] -rw-------. 1 boinc boinc   6022858 Mar 24 12:39 log.49178033._001235.job.log.1
[2026-03-24 12:39:24] -rw-------. 1 boinc boinc       357 Mar 24 12:39 output.list
[2026-03-24 12:39:24] -rw-r--r--. 1 boinc boinc       620 Mar 24 12:39 runtime_log
[2026-03-24 12:39:24] -rw-------. 1 boinc boinc   6912000 Mar 24 12:39 result.tar.gz
[2026-03-24 12:39:24] -rw-r--r--. 1 boinc boinc      8832 Mar 24 12:39 runtime_log.err
[2026-03-24 12:39:24] -rw-------. 1 boinc boinc       658 Mar 24 12:39 5mQNDm23gO9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmoZ7LDmL1GB9n.diag
[2026-03-24 12:39:24] -rw-r--r--. 1 boinc boinc     20983 Mar 24 12:39 stderr.txt
[2026-03-24 12:39:24] HITS file was successfully produced:
[2026-03-24 12:39:24] -rw-------. 1 boinc boinc 255225533 Mar 24 12:36 shared/HITS.pool.root.1
[2026-03-24 12:39:24]  *** Contents of shared directory: ***
[2026-03-24 12:39:24] total 496368
[2026-03-24 12:39:24] -rw-r--r--. 2 boinc boinc 245523552 Mar 24 00:30 ATLAS.root_0
[2026-03-24 12:39:24] -rw-r--r--. 2 boinc boinc    597550 Mar 24 00:30 input.tar.gz
[2026-03-24 12:39:24] -rw-r--r--. 2 boinc boinc     15845 Mar 24 00:30 start_atlas.sh
[2026-03-24 12:39:24] -rw-------. 1 boinc boinc 255225533 Mar 24 12:36 HITS.pool.root.1
[2026-03-24 12:39:24] -rw-------. 1 boinc boinc   6912000 Mar 24 12:39 result.tar.gz
12:39:25 (5970): run_atlas exited; CPU time 172003.869347
12:39:25 (5970): called boinc_finish(0)

</stderr_txt>
]]>

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