Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:34:21 (2215655): wrapper (7.7.26015): starting
04:34:21 (2215655): wrapper: running run_atlas (--nthreads 3)
[2026-03-23 04:34:21] Arguments: --nthreads 3
[2026-03-23 04:34:21] Threads: 3
[2026-03-23 04:34:21] Checking for CVMFS
[2026-03-23 04:34:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-23 04:34:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-23 04:34:22] Running cvmfs_config stat atlas.cern.ch
[2026-03-23 04:34:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-23 04:34:22] 2.9.2.0 2169481 526 57108 157599 2 49 31892417 36864000 0 130560 0 169244 99.974 21962 18120 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-23 04:34:22] CVMFS is ok
[2026-03-23 04:34:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-23 04:34:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-23 04:34:22] Further information can be found at the LHC@home message board.
[2026-03-23 04:34:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-23 04:34:22] Checking for apptainer binary...
[2026-03-23 04:34:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-23 04:34:22] Running /usr/bin/apptainer --version
[2026-03-23 04:34:22] apptainer version 1.4.1-1.1
[2026-03-23 04:34:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-23 04:34:22] thA337a
[2026-03-23 04:34:22] apptainer works
[2026-03-23 04:34:22] Set ATHENA_PROC_NUMBER=3
[2026-03-23 04:34:22] Set ATHENA_CORE_NUMBER=3
[2026-03-23 04:34:22] Starting ATLAS job with PandaID=7062215780
[2026-03-23 04:34:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-23 07:33:08]  *** The last 200 lines of the pilot log: ***
[2026-03-23 07:33:08] 2026-03-23 06:32:36,078 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-23 07:33:08] 2026-03-23 06:32:36,078 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-23 07:33:08] 2026-03-23 06:32:36,078 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-23 07:33:08] 2026-03-23 06:32:36,078 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-23 07:33:08] 2026-03-23 06:32:36,078 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-23 07:33:08] 2026-03-23 06:32:36,078 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-23 07:33:08] 2026-03-23 06:32:36,078 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-23 07:33:08] 2026-03-23 06:32:36,078 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-23 07:33:08] 2026-03-23 06:32:36,078 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-23 07:33:08] 2026-03-23 06:32:36,078 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-23 07:33:08] 2026-03-23 06:32:36,078 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-23 07:33:08] 2026-03-23 06:32:36,079 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-23 07:33:08] 2026-03-23 06:32:36,079 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-23 07:33:08] 2026-03-23 06:32:36,079 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-23 07:33:08] 2026-03-23 06:32:36,079 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-23 07:33:08] 2026-03-23 06:32:36,079 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-23 07:33:08] 2026-03-23 06:32:36,079 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-23 07:33:08] 2026-03-23 06:32:36,079 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-23 07:33:08] 2026-03-23 06:32:36,079 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-23 07:33:08] 2026-03-23 06:32:36,079 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-23 07:33:08] 2026-03-23 06:32:36,079 | INFO     | job 7062215780 has completed (purged errors)
[2026-03-23 07:33:08] 2026-03-23 06:32:36,079 | INFO     | overall cleanup function is called
[2026-03-23 07:33:08] 2026-03-23 06:32:37,085 | INFO     | --- collectZombieJob: --- 10, [2224132]
[2026-03-23 07:33:08] 2026-03-23 06:32:37,086 | INFO     | zombie collector waiting for pid 2224132
[2026-03-23 07:33:08] 2026-03-23 06:32:37,086 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-23 07:33:08] 2026-03-23 06:32:37,086 | INFO     | collected zombie processes
[2026-03-23 07:33:08] 2026-03-23 06:32:37,086 | INFO     | will attempt to kill all subprocesses of pid=2224132
[2026-03-23 07:33:08] 2026-03-23 06:32:37,126 | INFO     | process IDs to be killed: [2224132] (in reverse order)
[2026-03-23 07:33:08] 2026-03-23 06:32:37,151 | WARNING  | found no corresponding commands to process id(s)
[2026-03-23 07:33:08] 2026-03-23 06:32:37,151 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-23 07:33:08] 2026-03-23 06:32:37,152 | INFO     | did not find any defunct processes belonging to 2224132
[2026-03-23 07:33:08] 2026-03-23 06:32:37,153 | INFO     | did not find any defunct processes belonging to 2224132
[2026-03-23 07:33:08] 2026-03-23 06:32:37,153 | INFO     | ready for new job
[2026-03-23 07:33:08] 2026-03-23 06:32:37,154 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-23 07:33:08] 2026-03-23 06:32:37,154 | INFO     | **************************************
[2026-03-23 07:33:08] 2026-03-23 06:32:37,154 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-23 07:33:08] 2026-03-23 06:32:37,154 | INFO     | **************************************
[2026-03-23 07:33:08] 2026-03-23 06:32:37,154 | INFO     | 
[2026-03-23 07:33:08] 2026-03-23 06:32:37,155 | INFO     | architecture information:
[2026-03-23 07:33:08] 2026-03-23 06:32:37,155 | INFO     | executing command: cat /etc/os-release
[2026-03-23 07:33:08] 2026-03-23 06:32:37,163 | INFO     | cat /etc/os-release:
[2026-03-23 07:33:08] NAME="CentOS Linux"
[2026-03-23 07:33:08] VERSION="7 (Core)"
[2026-03-23 07:33:08] ID="centos"
[2026-03-23 07:33:08] ID_LIKE="rhel fedora"
[2026-03-23 07:33:08] VERSION_ID="7"
[2026-03-23 07:33:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-23 07:33:08] ANSI_COLOR="0;31"
[2026-03-23 07:33:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-23 07:33:08] HOME_URL="https://www.centos.org/"
[2026-03-23 07:33:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-23 07:33:08] 
[2026-03-23 07:33:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-23 07:33:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-23 07:33:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-23 07:33:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-23 07:33:08] 
[2026-03-23 07:33:08] 2026-03-23 06:32:37,164 | INFO     | **************************************
[2026-03-23 07:33:08] 2026-03-23 06:32:37,667 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-23 07:33:08] 2026-03-23 06:32:37,679 | INFO     | sufficient remaining disk space (373422030848 B)
[2026-03-23 07:33:08] 2026-03-23 06:32:37,680 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-23 07:33:08] 2026-03-23 06:32:37,680 | INFO     | current server update state: UPDATING_FINAL
[2026-03-23 07:33:08] 2026-03-23 06:32:37,680 | INFO     | update_server=False
[2026-03-23 07:33:08] 2026-03-23 06:32:37,680 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-23 07:33:08] 2026-03-23 06:32:37,680 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-23 07:33:08] 2026-03-23 06:32:37,680 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-23 07:33:08] 2026-03-23 06:32:38,034 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-23 07:33:08] 2026-03-23 06:32:38,034 | INFO     | aborting loop
[2026-03-23 07:33:08] 2026-03-23 06:32:38,444 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-23 07:33:08] 2026-03-23 06:32:38,484 | INFO     | all data control threads have been joined
[2026-03-23 07:33:08] 2026-03-23 06:32:38,561 | INFO     | all payload control threads have been joined
[2026-03-23 07:33:08] 2026-03-23 06:32:38,685 | INFO     | [job] retrieve thread has finished
[2026-03-23 07:33:08] 2026-03-23 06:32:38,686 | INFO     | [job] queue monitor thread has finished
[2026-03-23 07:33:08] 2026-03-23 06:32:38,825 | INFO     | [payload] failed_post thread has finished
[2026-03-23 07:33:08] 2026-03-23 06:32:39,040 | INFO     | [job] job monitor thread has finished
[2026-03-23 07:33:08] 2026-03-23 06:32:39,075 | INFO     | all job control threads have been joined
[2026-03-23 07:33:08] 2026-03-23 06:32:39,336 | INFO     | [payload] validate_post thread has finished
[2026-03-23 07:33:08] 2026-03-23 06:32:39,489 | INFO     | [data] control thread has finished
[2026-03-23 07:33:08] 2026-03-23 06:32:39,491 | INFO     | [job] validate thread has finished
[2026-03-23 07:33:08] 2026-03-23 06:32:39,565 | INFO     | [payload] control thread has finished
[2026-03-23 07:33:08] 2026-03-23 06:32:39,649 | INFO     | [payload] validate_pre thread has finished
[2026-03-23 07:33:08] 2026-03-23 06:32:39,653 | INFO     | [job] create_data_payload thread has finished
[2026-03-23 07:33:08] 2026-03-23 06:32:39,670 | INFO     | [data] copytool_in thread has finished
[2026-03-23 07:33:08] 2026-03-23 06:32:40,080 | INFO     | [job] control thread has finished
[2026-03-23 07:33:08] 2026-03-23 06:32:40,152 | INFO     | [payload] execute_payloads thread has finished
[2026-03-23 07:33:08] 2026-03-23 06:32:40,451 | INFO     | [data] copytool_out thread has finished
[2026-03-23 07:33:08] 2026-03-23 06:32:40,781 | INFO     | job.realtimelogging is not enabled
[2026-03-23 07:33:08] 2026-03-23 06:32:41,687 | INFO     | [data] queue_monitor thread has finished
[2026-03-23 07:33:08] 2026-03-23 06:32:41,787 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-23 07:33:08] 2026-03-23 06:32:42,413 | INFO     | [monitor] cgroup control has ended
[2026-03-23 07:33:08] 2026-03-23 06:32:43,472 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140658917922624)>', '<ExcThread(monitor, started 140658299893504)>']
[2026-03-23 07:33:08] 2026-03-23 06:32:48,498 | INFO     | all workflow threads have been joined
[2026-03-23 07:33:08] 2026-03-23 06:32:48,499 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-23 07:33:08] 2026-03-23 06:32:48,499 | INFO     | traces error code: 0
[2026-03-23 07:33:08] 2026-03-23 06:32:48,499 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-23 07:33:08] 2026-03-23 06:33:08,422 | INFO     | PID=2219700 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-23 07:33:08] 2026-03-23 06:33:08,422 | INFO     | found 0 job(s) in 20 queues
[2026-03-23 07:33:08] 2026-03-23 06:33:08,422 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-23 07:33:08] 2026-03-23 06:33:08,422 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-23 07:33:08] 2026-03-23 06:33:08,422 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-23 07:33:08] 2026-03-23 06:33:08,422 | INFO     | [monitor] control thread has ended
[2026-03-23 07:33:08] 2026-03-23 06:33:08,467 [wrapper] ==== pilot stdout END ====
[2026-03-23 07:33:08] 2026-03-23 06:33:08,470 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-23 07:33:08] 2026-03-23 06:33:08,472 [wrapper] pilotpid: 2219700
[2026-03-23 07:33:08] 2026-03-23 06:33:08,475 [wrapper] Pilot exit status: 0
[2026-03-23 07:33:08] 2026-03-23 06:33:08,482 [wrapper] pandaids: 7062215780
[2026-03-23 07:33:08] 2026-03-23 06:33:08,497 [wrapper] cleanup supervisor_pilot 2230513 2219701
[2026-03-23 07:33:08] 2026-03-23 06:33:08,499 [wrapper] Test setup, not cleaning
[2026-03-23 07:33:08] 2026-03-23 06:33:08,501 [wrapper] apfmon messages muted
[2026-03-23 07:33:08] 2026-03-23 06:33:08,504 [wrapper] ==== wrapper stdout END ====
[2026-03-23 07:33:08] 2026-03-23 06:33:08,506 [wrapper] ==== wrapper stderr END ====
[2026-03-23 07:33:08]  *** Error codes and diagnostics ***
[2026-03-23 07:33:08]     "exeErrorCode": 0,
[2026-03-23 07:33:08]     "exeErrorDiag": "",
[2026-03-23 07:33:08]     "pilotErrorCode": 0,
[2026-03-23 07:33:08]     "pilotErrorDiag": "",
[2026-03-23 07:33:08]  *** Listing of results directory ***
[2026-03-23 07:33:08] total 471744
[2026-03-23 07:33:08] -rw-r--r-- 1 boinc boinc    585013 Mar 22 20:17 pilot3.tar.gz
[2026-03-23 07:33:08] -rwx------ 1 boinc boinc     36322 Mar 22 20:21 runpilot2-wrapper.sh
[2026-03-23 07:33:08] -rw-r--r-- 1 boinc boinc      5111 Mar 22 20:26 queuedata.json
[2026-03-23 07:33:08] -rw-r--r-- 1 boinc boinc       100 Mar 23 04:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-23 07:33:08] -rwxr-xr-x 1 boinc boinc      7986 Mar 23 04:34 run_atlas
[2026-03-23 07:33:08] -rw-r--r-- 1 boinc boinc       105 Mar 23 04:34 job.xml
[2026-03-23 07:33:08] -rw-r--r-- 2 boinc boinc 240675709 Mar 23 04:34 EVNT.49135435._000005.pool.root.1
[2026-03-23 07:33:08] -rw-r--r-- 2 boinc boinc    597561 Mar 23 04:34 input.tar.gz
[2026-03-23 07:33:08] -rw-r--r-- 2 boinc boinc     15845 Mar 23 04:34 start_atlas.sh
[2026-03-23 07:33:08] drwxrwx--x 2 boinc boinc      4096 Mar 23 04:34 shared
[2026-03-23 07:33:08] -rw-r--r-- 1 boinc boinc         0 Mar 23 04:34 boinc_setup_complete
[2026-03-23 07:33:08] -rw-r--r-- 1 boinc boinc      6446 Mar 23 04:34 init_data.xml
[2026-03-23 07:33:08] -rw-r--r-- 1 boinc boinc         0 Mar 23 04:34 boinc_lockfile
[2026-03-23 07:33:08] -rw-r--r-- 1 boinc boinc      2642 Mar 23 04:34 pandaJob.out
[2026-03-23 07:33:08] -rw------- 1 boinc boinc   1010663 Mar 23 04:34 agis_schedconf.cvmfs.json
[2026-03-23 07:33:08] -rw------- 1 boinc boinc   1511579 Mar 23 04:34 agis_ddmendpoints.agis.ALL.json
[2026-03-23 07:33:08] -rw------- 1 boinc boinc       424 Mar 23 04:34 workernode_map.json
[2026-03-23 07:33:08] drwx------ 5 boinc boinc      4096 Mar 23 04:34 pilot3
[2026-03-23 07:33:08] -rw------- 1 boinc boinc 234734007 Mar 23 07:32 HITS.49176840._000160.pool.root.1
[2026-03-23 07:33:08] -rw-r--r-- 1 boinc boinc       530 Mar 23 07:32 boinc_task_state.xml
[2026-03-23 07:33:08] -rw------- 1 boinc boinc        95 Mar 23 07:32 pilot_heartbeat.json
[2026-03-23 07:33:08] -rw------- 1 boinc boinc      1029 Mar 23 07:32 memory_monitor_summary.json
[2026-03-23 07:33:08] -rw------- 1 boinc boinc    351444 Mar 23 07:32 log.49176840._000160.job.log.tgz.1
[2026-03-23 07:33:08] -rw------- 1 boinc boinc      6297 Mar 23 07:32 heartbeat.json
[2026-03-23 07:33:08] -rw-r--r-- 1 boinc boinc        28 Mar 23 07:33 wrapper_checkpoint.txt
[2026-03-23 07:33:08] -rw-r--r-- 1 boinc boinc      8192 Mar 23 07:33 boinc_mmap_file
[2026-03-23 07:33:08] -rw------- 1 boinc boinc       747 Mar 23 07:33 pilotlog.txt
[2026-03-23 07:33:08] -rw------- 1 boinc boinc   1513742 Mar 23 07:33 log.49176840._000160.job.log.1
[2026-03-23 07:33:08] -rw------- 1 boinc boinc       357 Mar 23 07:33 output.list
[2026-03-23 07:33:08] -rw-r--r-- 1 boinc boinc       620 Mar 23 07:33 runtime_log
[2026-03-23 07:33:08] -rw------- 1 boinc boinc   1884160 Mar 23 07:33 result.tar.gz
[2026-03-23 07:33:08] -rw-r--r-- 1 boinc boinc      8902 Mar 23 07:33 runtime_log.err
[2026-03-23 07:33:08] -rw------- 1 boinc boinc       661 Mar 23 07:33 1vGODmWXdO9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmjD6LDmesFlDo.diag
[2026-03-23 07:33:08] -rw-r--r-- 1 boinc boinc     12920 Mar 23 07:33 stderr.txt
[2026-03-23 07:33:08] HITS file was successfully produced:
[2026-03-23 07:33:08] -rw------- 1 boinc boinc 234734007 Mar 23 07:32 shared/HITS.pool.root.1
[2026-03-23 07:33:08]  *** Contents of shared directory: ***
[2026-03-23 07:33:08] total 466716
[2026-03-23 07:33:08] -rw-r--r-- 2 boinc boinc 240675709 Mar 23 04:34 ATLAS.root_0
[2026-03-23 07:33:08] -rw-r--r-- 2 boinc boinc    597561 Mar 23 04:34 input.tar.gz
[2026-03-23 07:33:08] -rw-r--r-- 2 boinc boinc     15845 Mar 23 04:34 start_atlas.sh
[2026-03-23 07:33:08] -rw------- 1 boinc boinc 234734007 Mar 23 07:32 HITS.pool.root.1
[2026-03-23 07:33:08] -rw------- 1 boinc boinc   1884160 Mar 23 07:33 result.tar.gz
07:33:10 (2215655): run_atlas exited; CPU time 31004.187975
07:33:10 (2215655): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN