Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:35:23 (659904): wrapper (7.7.26015): starting
21:35:23 (659904): wrapper: running run_atlas (--nthreads 12)
[2026-03-23 21:35:23] Arguments: --nthreads 12
[2026-03-23 21:35:23] Threads: 12
[2026-03-23 21:35:23] Checking for CVMFS
[2026-03-23 21:35:23] No cvmfs_config command found, will try listing directly
[2026-03-23 21:35:23] CVMFS is ok
[2026-03-23 21:35:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-23 21:35:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-23 21:35:23] Further information can be found at the LHC@home message board.
[2026-03-23 21:35:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-23 21:35:23] Checking for apptainer binary...
[2026-03-23 21:35:23] which: no apptainer in ((null))
[2026-03-23 21:35:23] apptainer is not installed, using version from CVMFS
[2026-03-23 21:35:23] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-23 21:35:24] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot240/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut23.grid.cesnet.cz
[2026-03-23 21:35:24] apptainer works
[2026-03-23 21:35:24] Set ATHENA_PROC_NUMBER=12
[2026-03-23 21:35:24] Set ATHENA_CORE_NUMBER=12
[2026-03-23 21:35:24] Starting ATLAS job with PandaID=7057888386
[2026-03-23 21:35:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot240/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-23 22:23:54]  *** The last 200 lines of the pilot log: ***
[2026-03-23 22:23:54]  mtime=0
[2026-03-23 22:23:54]  protocol_id=None
[2026-03-23 22:23:54]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-23 22:23:54]  replicas=None
[2026-03-23 22:23:54]  scope=mc23_13p6TeV
[2026-03-23 22:23:54]  status=None
[2026-03-23 22:23:54]  status_code=0
[2026-03-23 22:23:54]  storage_token=
[2026-03-23 22:23:54]  surl=/var/lib/boinc/var/slot240/slots/0/PanDA_Pilot-7057888386/log.49191952._000002.job.log.tgz.1
[2026-03-23 22:23:54]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/49/3a/log.49191952._000002.job.log.tgz.1
[2026-03-23 22:23:54]  workdir=None
[2026-03-23 22:23:54] ]
[2026-03-23 22:23:54] 2026-03-23 21:23:15,428 | INFO     | transferring file log.49191952._000002.job.log.tgz.1 from /var/lib/boinc/var/slot240/slots/0/PanDA_Pilot-7057888386/log.49191952._000002.job.log.tgz.1 to /var/lib/
[2026-03-23 22:23:54] 2026-03-23 21:23:15,429 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot240/slots/0/PanDA_Pilot-7057888386/log.49191952._000002.job.log.tgz.1 /var/lib/boinc/var/slot240/slots/0/
[2026-03-23 22:23:54] 2026-03-23 21:23:15,443 | INFO     | adding to output.list: log.49191952._000002.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/49/3a/log.49191952._000002.job.log.tg
[2026-03-23 22:23:54] 2026-03-23 21:23:15,443 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-23 22:23:54] 2026-03-23 21:23:15,443 | INFO     | summary of transferred files:
[2026-03-23 22:23:54] 2026-03-23 21:23:15,444 | INFO     |  -- lfn=log.49191952._000002.job.log.tgz.1, status_code=0, status=transferred
[2026-03-23 22:23:54] 2026-03-23 21:23:15,444 | INFO     | stage-out finished correctly
[2026-03-23 22:23:54] 2026-03-23 21:23:15,749 | INFO     | time since job start (2860s) is within the limit (345600.0s)
[2026-03-23 22:23:54] 2026-03-23 21:23:17,351 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-23 22:23:54] 2026-03-23 21:23:17,755 | INFO     | time since job start (2862s) is within the limit (345600.0s)
[2026-03-23 22:23:54] 2026-03-23 21:23:17,948 | INFO     | job 7057888386 has state=finished
[2026-03-23 22:23:54] 2026-03-23 21:23:17,948 | INFO     | preparing for final server update for job 7057888386 in state='finished'
[2026-03-23 22:23:54] 2026-03-23 21:23:17,948 | INFO     | reading metadata from: /var/lib/boinc/var/slot240/slots/0/PanDA_Pilot-7057888386/jobReport.json
[2026-03-23 22:23:54] 2026-03-23 21:23:17,950 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot240/slots/0/workernode_map.json
[2026-03-23 22:23:54] 2026-03-23 21:23:17,950 | INFO     | this job has now completed (state=finished)
[2026-03-23 22:23:54] 2026-03-23 21:23:17,950 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-23 22:23:54] 2026-03-23 21:23:17,950 | INFO     | log transfer has been attempted: DONE
[2026-03-23 22:23:54] 2026-03-23 21:23:17,950 | INFO     | job 7057888386 has finished - writing final server update
[2026-03-23 22:23:54] 2026-03-23 21:23:17,951 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3343577/.job.ad'
[2026-03-23 22:23:54] 2026-03-23 21:23:17,951 | INFO     | total number of processed events: 400 (read)
[2026-03-23 22:23:54] 2026-03-23 21:23:17,968 | INFO     | using path: /var/lib/boinc/var/slot240/slots/0/PanDA_Pilot-7057888386/memory_monitor_summary.json (trf name=prmon)
[2026-03-23 22:23:54] 2026-03-23 21:23:17,968 | INFO     | extracted standard info from prmon json
[2026-03-23 22:23:54] 2026-03-23 21:23:17,969 | INFO     | extracted standard memory fields from prmon json
[2026-03-23 22:23:54] 2026-03-23 21:23:17,969 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-23 22:23:54] 2026-03-23 21:23:17,969 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-23 22:23:54] 2026-03-23 21:23:17,969 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-23 22:23:54] 2026-03-23 21:23:17,970 | INFO     | fitting pss+swap vs Time
[2026-03-23 22:23:54] 2026-03-23 21:23:17,970 | INFO     | sum of square deviations: 19832930.0
[2026-03-23 22:23:54] 2026-03-23 21:23:17,970 | INFO     | sum of deviations: 457018435.5
[2026-03-23 22:23:54] 2026-03-23 21:23:17,970 | INFO     | mean x: 1774299651.5
[2026-03-23 22:23:54] 2026-03-23 21:23:17,970 | INFO     | mean y: 2748840.625
[2026-03-23 22:23:54] 2026-03-23 21:23:17,970 | INFO     | intersect: -40883174259.83092
[2026-03-23 22:23:54] 2026-03-23 21:23:17,970 | INFO     | chi2: 0.000367621127599526
[2026-03-23 22:23:54] 2026-03-23 21:23:17,970 | INFO     | current memory leak: 23.04 B/s (using 40 data points, chi2=0.00)
[2026-03-23 22:23:54] 2026-03-23 21:23:17,970 | INFO     | could have reported an average CPU frequency of 3620 MHz (5 samples)
[2026-03-23 22:23:54] 2026-03-23 21:23:17,970 | INFO     | ..............................
[2026-03-23 22:23:54] 2026-03-23 21:23:17,971 | INFO     | . Timing measurements:
[2026-03-23 22:23:54] 2026-03-23 21:23:17,971 | INFO     | . get job = 0 s
[2026-03-23 22:23:54] 2026-03-23 21:23:17,971 | INFO     | . initial setup = 4 s
[2026-03-23 22:23:54] 2026-03-23 21:23:17,971 | INFO     | . payload setup = 6 s
[2026-03-23 22:23:54] 2026-03-23 21:23:17,971 | INFO     | . stage-in = 0 s
[2026-03-23 22:23:54] 2026-03-23 21:23:17,971 | INFO     | . payload execution = 2838 s
[2026-03-23 22:23:54] 2026-03-23 21:23:17,971 | INFO     | . stage-out = 0 s
[2026-03-23 22:23:54] 2026-03-23 21:23:17,971 | INFO     | . log creation = 0 s
[2026-03-23 22:23:54] 2026-03-23 21:23:17,971 | INFO     | ..............................
[2026-03-23 22:23:54] 2026-03-23 21:23:18,387 | INFO     | 
[2026-03-23 22:23:54] 2026-03-23 21:23:18,387 | INFO     | job summary report
[2026-03-23 22:23:54] 2026-03-23 21:23:18,387 | INFO     | --------------------------------------------------
[2026-03-23 22:23:54] 2026-03-23 21:23:18,387 | INFO     | PanDA job id: 7057888386
[2026-03-23 22:23:54] 2026-03-23 21:23:18,387 | INFO     | task id: 49191952
[2026-03-23 22:23:54] 2026-03-23 21:23:18,387 | INFO     | errors: (none)
[2026-03-23 22:23:54] 2026-03-23 21:23:18,387 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-23 22:23:54] 2026-03-23 21:23:18,387 | INFO     | pilot state: finished 
[2026-03-23 22:23:54] 2026-03-23 21:23:18,387 | INFO     | transexitcode: 0
[2026-03-23 22:23:54] 2026-03-23 21:23:18,387 | INFO     | exeerrorcode: 0
[2026-03-23 22:23:54] 2026-03-23 21:23:18,387 | INFO     | exeerrordiag: 
[2026-03-23 22:23:54] 2026-03-23 21:23:18,387 | INFO     | exitcode: 0
[2026-03-23 22:23:54] 2026-03-23 21:23:18,387 | INFO     | exitmsg: OK
[2026-03-23 22:23:54] 2026-03-23 21:23:18,387 | INFO     | cpuconsumptiontime: 31060 s
[2026-03-23 22:23:54] 2026-03-23 21:23:18,387 | INFO     | nevents: 400
[2026-03-23 22:23:54] 2026-03-23 21:23:18,387 | INFO     | neventsw: 0
[2026-03-23 22:23:54] 2026-03-23 21:23:18,387 | INFO     | pid: 670715
[2026-03-23 22:23:54] 2026-03-23 21:23:18,388 | INFO     | pgrp: 670715
[2026-03-23 22:23:54] 2026-03-23 21:23:18,388 | INFO     | corecount: 12
[2026-03-23 22:23:54] 2026-03-23 21:23:18,388 | INFO     | event service: False
[2026-03-23 22:23:54] 2026-03-23 21:23:18,388 | INFO     | sizes: {0: 2279895, 1: 2280299, 11: 2280299, 2848: 2305673, 2849: 2314695, 2851: 2314751, 2852: 2315105}
[2026-03-23 22:23:54] 2026-03-23 21:23:18,388 | INFO     | --------------------------------------------------
[2026-03-23 22:23:54] 2026-03-23 21:23:18,388 | INFO     | 
[2026-03-23 22:23:54] 2026-03-23 21:23:18,388 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot240/slots/0
[2026-03-23 22:23:54] 2026-03-23 21:23:18,409 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-23 22:23:54] 2026-03-23 21:23:18,409 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-23 22:23:54] 2026-03-23 21:23:18,409 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-23 22:23:54] 2026-03-23 21:23:18,409 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-23 22:23:54] 2026-03-23 21:23:18,409 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-23 22:23:54] 2026-03-23 21:23:18,409 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-23 22:23:54] 2026-03-23 21:23:18,409 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-23 22:23:54] 2026-03-23 21:23:18,410 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-23 22:23:54] 2026-03-23 21:23:18,410 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-23 22:23:54] 2026-03-23 21:23:18,410 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-23 22:23:54] 2026-03-23 21:23:18,410 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-23 22:23:54] 2026-03-23 21:23:18,410 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-23 22:23:54] 2026-03-23 21:23:18,410 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-23 22:23:54] 2026-03-23 21:23:18,410 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-23 22:23:54] 2026-03-23 21:23:18,410 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-23 22:23:54] 2026-03-23 21:23:18,410 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-23 22:23:54] 2026-03-23 21:23:18,410 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-23 22:23:54] 2026-03-23 21:23:18,410 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-23 22:23:54] 2026-03-23 21:23:18,410 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-23 22:23:54] 2026-03-23 21:23:18,410 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-23 22:23:54] 2026-03-23 21:23:18,410 | INFO     | job 7057888386 has completed (purged errors)
[2026-03-23 22:23:54] 2026-03-23 21:23:18,410 | INFO     | overall cleanup function is called
[2026-03-23 22:23:54] 2026-03-23 21:23:18,601 | WARNING  | process 670715 can no longer be monitored (due to stat problems) - aborting
[2026-03-23 22:23:54] 2026-03-23 21:23:19,289 | INFO     | using path: /var/lib/boinc/var/slot240/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-23 22:23:54] 2026-03-23 21:23:19,418 | INFO     | --- collectZombieJob: --- 10, [670715]
[2026-03-23 22:23:54] 2026-03-23 21:23:19,419 | INFO     | zombie collector waiting for pid 670715
[2026-03-23 22:23:54] 2026-03-23 21:23:19,419 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-23 22:23:54] 2026-03-23 21:23:19,419 | INFO     | collected zombie processes
[2026-03-23 22:23:54] 2026-03-23 21:23:19,419 | INFO     | will attempt to kill all subprocesses of pid=670715
[2026-03-23 22:23:54] 2026-03-23 21:23:21,196 | INFO     | PID=664787 has CPU usage=16.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-23 22:23:54] 2026-03-23 21:23:21,196 | INFO     | .. there are 15 such processes running
[2026-03-23 22:23:54] 2026-03-23 21:23:21,421 | INFO     | number of running child processes to parent process 670715: 1
[2026-03-23 22:23:54] 2026-03-23 21:23:21,421 | INFO     | maximum number of monitored processes: 6
[2026-03-23 22:23:54] 2026-03-23 21:23:21,421 | INFO     | aborting job monitoring since job object (job id=7057888386) has expired
[2026-03-23 22:23:54] 2026-03-23 21:23:21,474 | INFO     | process IDs to be killed: [670715] (in reverse order)
[2026-03-23 22:23:54] 2026-03-23 21:23:21,621 | WARNING  | found no corresponding commands to process id(s)
[2026-03-23 22:23:54] 2026-03-23 21:23:21,622 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-23 22:23:54] 2026-03-23 21:23:21,648 | INFO     | did not find any defunct processes belonging to 670715
[2026-03-23 22:23:54] 2026-03-23 21:23:21,672 | INFO     | did not find any defunct processes belonging to 670715
[2026-03-23 22:23:54] 2026-03-23 21:23:21,672 | INFO     | ready for new job
[2026-03-23 22:23:54] 2026-03-23 21:23:21,672 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-23 22:23:54] 2026-03-23 21:23:21,674 | INFO     | **************************************
[2026-03-23 22:23:54] 2026-03-23 21:23:21,674 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-23 22:23:54] 2026-03-23 21:23:21,674 | INFO     | **************************************
[2026-03-23 22:23:54] 2026-03-23 21:23:21,674 | INFO     | 
[2026-03-23 22:23:54] 2026-03-23 21:23:21,680 | INFO     | architecture information:
[2026-03-23 22:23:54] 2026-03-23 21:23:21,680 | INFO     | executing command: cat /etc/os-release
[2026-03-23 22:23:54] 2026-03-23 21:23:21,696 | INFO     | cat /etc/os-release:
[2026-03-23 22:23:54] NAME="CentOS Linux"
[2026-03-23 22:23:54] VERSION="7 (Core)"
[2026-03-23 22:23:54] ID="centos"
[2026-03-23 22:23:54] ID_LIKE="rhel fedora"
[2026-03-23 22:23:54] VERSION_ID="7"
[2026-03-23 22:23:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-23 22:23:54] ANSI_COLOR="0;31"
[2026-03-23 22:23:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-23 22:23:54] HOME_URL="https://www.centos.org/"
[2026-03-23 22:23:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-23 22:23:54] 
[2026-03-23 22:23:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-23 22:23:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-23 22:23:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-23 22:23:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-23 22:23:54] 
[2026-03-23 22:23:54] 2026-03-23 21:23:21,697 | INFO     | **************************************
[2026-03-23 22:23:54] 2026-03-23 21:23:22,200 | INFO     | executing command: df -mP /var/lib/boinc/var/slot240/slots/0
[2026-03-23 22:23:54] 2026-03-23 21:23:22,213 | INFO     | sufficient remaining disk space (172066078720 B)
[2026-03-23 22:23:54] 2026-03-23 21:23:22,214 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-23 22:23:54] 2026-03-23 21:23:22,214 | INFO     | current server update state: UPDATING_FINAL
[2026-03-23 22:23:54] 2026-03-23 21:23:22,214 | INFO     | update_server=False
[2026-03-23 22:23:54] 2026-03-23 21:23:22,214 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-23 22:23:54] 2026-03-23 21:23:22,214 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-23 22:23:54] 2026-03-23 21:23:22,215 | INFO     | will abort loop
[2026-03-23 22:23:54] 2026-03-23 21:23:22,592 | INFO     | all data control threads have been joined
[2026-03-23 22:23:54] 2026-03-23 21:23:22,642 | INFO     | all job control threads have been joined
[2026-03-23 22:23:54] 2026-03-23 21:23:23,029 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-23 22:23:54] 2026-03-23 21:23:23,215 | INFO     | [job] job monitor thread has finished
[2026-03-23 22:23:54] 2026-03-23 21:23:23,219 | INFO     | [job] retrieve thread has finished
[2026-03-23 22:23:54] 2026-03-23 21:23:23,364 | INFO     | [payload] validate_post thread has finished
[2026-03-23 22:23:54] 2026-03-23 21:23:23,409 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-23 22:23:54] 2026-03-23 21:23:23,509 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-23 22:23:54] 2026-03-23 21:23:23,549 | INFO     | all payload control threads have been joined
[2026-03-23 22:23:54] 2026-03-23 21:23:23,598 | INFO     | [data] control thread has finished
[2026-03-23 22:23:54] 2026-03-23 21:23:23,648 | INFO     | [job] control thread has finished
[2026-03-23 22:23:54] 2026-03-23 21:23:23,933 | INFO     | [job] validate thread has finished
[2026-03-23 22:23:54] 2026-03-23 21:23:24,002 | INFO     | [job] create_data_payload thread has finished
[2026-03-23 22:23:54] 2026-03-23 21:23:24,034 | INFO     | [job] queue monitor thread has finished
[2026-03-23 22:23:54] 2026-03-23 21:23:24,091 | INFO     | [payload] validate_pre thread has finished
[2026-03-23 22:23:54] 2026-03-23 21:23:24,296 | INFO     | [data] copytool_in thread has finished
[2026-03-23 22:23:54] 2026-03-23 21:23:24,319 | INFO     | [payload] execute_payloads thread has finished
[2026-03-23 22:23:54] 2026-03-23 21:23:24,402 | INFO     | [payload] failed_post thread has finished
[2026-03-23 22:23:54] 2026-03-23 21:23:24,553 | INFO     | [payload] control thread has finished
[2026-03-23 22:23:54] 2026-03-23 21:23:25,514 | INFO     | [data] copytool_out thread has finished
[2026-03-23 22:23:54] 2026-03-23 21:23:27,415 | INFO     | [data] queue_monitor thread has finished
[2026-03-23 22:23:54] 2026-03-23 21:23:32,644 | INFO     | job.realtimelogging is not enabled
[2026-03-23 22:23:54] 2026-03-23 21:23:33,650 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-23 22:23:54] 2026-03-23 21:23:39,683 | INFO     | [monitor] cgroup control has ended
[2026-03-23 22:23:54] 2026-03-23 21:23:41,321 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22667560490816)>', '<ExcThread(monitor, started 22667322472192)>']
[2026-03-23 22:23:54] 2026-03-23 21:23:46,345 | INFO     | all workflow threads have been joined
[2026-03-23 22:23:54] 2026-03-23 21:23:46,346 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-23 22:23:54] 2026-03-23 21:23:46,346 | INFO     | traces error code: 0
[2026-03-23 22:23:54] 2026-03-23 21:23:46,346 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-23 22:23:54] 2026-03-23 21:23:53,729 | INFO     | PID=664787 has CPU usage=7.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-23 22:23:54] 2026-03-23 21:23:53,729 | INFO     | .. there are 15 such processes running
[2026-03-23 22:23:54] 2026-03-23 21:23:53,730 | INFO     | found 0 job(s) in 20 queues
[2026-03-23 22:23:54] 2026-03-23 21:23:53,730 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-23 22:23:54] 2026-03-23 21:23:53,730 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-23 22:23:54] 2026-03-23 21:23:53,730 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-23 22:23:54] 2026-03-23 21:23:53,730 | INFO     | [monitor] control thread has ended
[2026-03-23 22:23:54] 2026-03-23 21:23:53,898 [wrapper] ==== pilot stdout END ====
[2026-03-23 22:23:54] 2026-03-23 21:23:53,901 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-23 22:23:54] 2026-03-23 21:23:53,903 [wrapper] pilotpid: 664787
[2026-03-23 22:23:54] 2026-03-23 21:23:53,905 [wrapper] Pilot exit status: 0
[2026-03-23 22:23:54] 2026-03-23 21:23:53,911 [wrapper] pandaids: 7057888386
[2026-03-23 22:23:54] 2026-03-23 21:23:54,020 [wrapper] cleanup supervisor_pilot  892513 664788
[2026-03-23 22:23:54] 2026-03-23 21:23:54,023 [wrapper] Test setup, not cleaning
[2026-03-23 22:23:54] 2026-03-23 21:23:54,025 [wrapper] apfmon messages muted
[2026-03-23 22:23:54] 2026-03-23 21:23:54,027 [wrapper] ==== wrapper stdout END ====
[2026-03-23 22:23:54] 2026-03-23 21:23:54,028 [wrapper] ==== wrapper stderr END ====
[2026-03-23 22:23:54]  *** Error codes and diagnostics ***
[2026-03-23 22:23:54]     "exeErrorCode": 0,
[2026-03-23 22:23:54]     "exeErrorDiag": "",
[2026-03-23 22:23:54]     "pilotErrorCode": 0,
[2026-03-23 22:23:54]     "pilotErrorDiag": "",
[2026-03-23 22:23:54]  *** Listing of results directory ***
[2026-03-23 22:23:54] total 467384
[2026-03-23 22:23:54] -rwx------. 1 boinc boinc     36322 Mar 22 15:19 runpilot2-wrapper.sh
[2026-03-23 22:23:54] -rw-r--r--. 1 boinc boinc    585013 Mar 22 17:44 pilot3.tar.gz
[2026-03-23 22:23:54] -rw-r--r--. 1 boinc boinc      5111 Mar 22 18:19 queuedata.json
[2026-03-23 22:23:54] -rw-r--r--. 1 boinc boinc       100 Mar 23 21:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-23 22:23:54] -rwxr-xr-x. 1 boinc boinc      7986 Mar 23 21:35 run_atlas
[2026-03-23 22:23:54] -rw-r--r--. 1 boinc boinc       105 Mar 23 21:35 job.xml
[2026-03-23 22:23:54] -rw-r--r--. 2 boinc boinc     15845 Mar 23 21:35 start_atlas.sh
[2026-03-23 22:23:54] drwxrwx--x. 2 boinc boinc      4096 Mar 23 21:35 shared
[2026-03-23 22:23:54] -rw-r--r--. 2 boinc boinc    597534 Mar 23 21:35 input.tar.gz
[2026-03-23 22:23:54] -rw-r--r--. 1 boinc boinc      6712 Mar 23 21:35 init_data.xml
[2026-03-23 22:23:54] -rw-r--r--. 2 boinc boinc 251754156 Mar 23 21:35 EVNT.49129428._000001.pool.root.1
[2026-03-23 22:23:54] -rw-r--r--. 1 boinc boinc         0 Mar 23 21:35 boinc_lockfile
[2026-03-23 22:23:54] -rw-r--r--. 1 boinc boinc      2587 Mar 23 21:35 pandaJob.out
[2026-03-23 22:23:54] -rw-------. 1 boinc boinc   1010851 Mar 23 21:35 agis_schedconf.cvmfs.json
[2026-03-23 22:23:54] -rw-------. 1 boinc boinc   1511579 Mar 23 21:35 agis_ddmendpoints.agis.ALL.json
[2026-03-23 22:23:54] -rw-------. 1 boinc boinc       444 Mar 23 21:35 workernode_map.json
[2026-03-23 22:23:54] drwx------. 5 boinc boinc      4096 Mar 23 21:35 pilot3
[2026-03-23 22:23:54] -rw-r--r--. 1 boinc boinc       529 Mar 23 22:22 boinc_task_state.xml
[2026-03-23 22:23:54] -rw-------. 1 boinc boinc 221326089 Mar 23 22:22 HITS.49191952._000002.pool.root.1
[2026-03-23 22:23:54] -rw-------. 1 boinc boinc      1027 Mar 23 22:23 memory_monitor_summary.json
[2026-03-23 22:23:54] -rw-------. 1 boinc boinc    345683 Mar 23 22:23 log.49191952._000002.job.log.tgz.1
[2026-03-23 22:23:54] -rw-------. 1 boinc boinc      6341 Mar 23 22:23 heartbeat.json
[2026-03-23 22:23:54] -rw-r--r--. 1 boinc boinc        27 Mar 23 22:23 wrapper_checkpoint.txt
[2026-03-23 22:23:54] -rw-r--r--. 1 boinc boinc      8192 Mar 23 22:23 boinc_mmap_file
[2026-03-23 22:23:54] -rw-------. 1 boinc boinc       822 Mar 23 22:23 pilotlog.txt
[2026-03-23 22:23:54] -rw-------. 1 boinc boinc        95 Mar 23 22:23 pilot_heartbeat.json
[2026-03-23 22:23:54] -rw-------. 1 boinc boinc    446291 Mar 23 22:23 log.49191952._000002.job.log.1
[2026-03-23 22:23:54] -rw-------. 1 boinc boinc       357 Mar 23 22:23 output.list
[2026-03-23 22:23:54] -rw-r--r--. 1 boinc boinc       620 Mar 23 22:23 runtime_log
[2026-03-23 22:23:54] -rw-------. 1 boinc boinc    808960 Mar 23 22:23 result.tar.gz
[2026-03-23 22:23:54] -rw-r--r--. 1 boinc boinc      9223 Mar 23 22:23 runtime_log.err
[2026-03-23 22:23:54] -rw-------. 1 boinc boinc       660 Mar 23 22:23 YmXKDmvpYO9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmut4LDmjLK4gn.diag
[2026-03-23 22:23:54] -rw-r--r--. 1 boinc boinc     21657 Mar 23 22:23 stderr.txt
[2026-03-23 22:23:54] HITS file was successfully produced:
[2026-03-23 22:23:54] -rw-------. 1 boinc boinc 221326089 Mar 23 22:22 shared/HITS.pool.root.1
[2026-03-23 22:23:54]  *** Contents of shared directory: ***
[2026-03-23 22:23:54] total 463396
[2026-03-23 22:23:54] -rw-r--r--. 2 boinc boinc     15845 Mar 23 21:35 start_atlas.sh
[2026-03-23 22:23:54] -rw-r--r--. 2 boinc boinc    597534 Mar 23 21:35 input.tar.gz
[2026-03-23 22:23:54] -rw-r--r--. 2 boinc boinc 251754156 Mar 23 21:35 ATLAS.root_0
[2026-03-23 22:23:54] -rw-------. 1 boinc boinc 221326089 Mar 23 22:22 HITS.pool.root.1
[2026-03-23 22:23:54] -rw-------. 1 boinc boinc    808960 Mar 23 22:23 result.tar.gz
22:23:55 (659904): run_atlas exited; CPU time 31141.421023
22:23:55 (659904): called boinc_finish(0)

</stderr_txt>
]]>

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