Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:13:16 (3040327): wrapper (7.7.26015): starting
06:13:16 (3040327): wrapper: running run_atlas (--nthreads 2)
[2026-03-23 06:13:16] Arguments: --nthreads 2
[2026-03-23 06:13:16] Threads: 2
[2026-03-23 06:13:16] Checking for CVMFS
[2026-03-23 06:13:16] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-23 06:13:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-23 06:13:16] Running cvmfs_config stat atlas.cern.ch
[2026-03-23 06:13:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-23 06:13:16] 2.9.2.0 2994062 704 53736 157601 0 50 31529685 36864001 0 130560 0 172079 99.972 24412 4835 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-23 06:13:16] CVMFS is ok
[2026-03-23 06:13:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-23 06:13:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-23 06:13:16] Further information can be found at the LHC@home message board.
[2026-03-23 06:13:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-23 06:13:16] Checking for apptainer binary...
[2026-03-23 06:13:16] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-23 06:13:16] Running /usr/bin/apptainer --version
[2026-03-23 06:13:16] apptainer version 1.4.1-1.1
[2026-03-23 06:13:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-23 06:13:16] thA389
[2026-03-23 06:13:16] apptainer works
[2026-03-23 06:13:16] Set ATHENA_PROC_NUMBER=2
[2026-03-23 06:13:16] Set ATHENA_CORE_NUMBER=2
[2026-03-23 06:13:16] Starting ATLAS job with PandaID=7062283248
[2026-03-23 06:13:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-23 09:30:03]  *** The last 200 lines of the pilot log: ***
[2026-03-23 09:30:03] 2026-03-23 08:29:13,541 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-23 09:30:03] 2026-03-23 08:29:13,541 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-23 09:30:03] 2026-03-23 08:29:13,541 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-23 09:30:03] 2026-03-23 08:29:13,541 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-23 09:30:03] 2026-03-23 08:29:13,541 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-23 09:30:03] 2026-03-23 08:29:13,542 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-23 09:30:03] 2026-03-23 08:29:13,542 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-23 09:30:03] 2026-03-23 08:29:13,542 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-23 09:30:03] 2026-03-23 08:29:13,542 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-23 09:30:03] 2026-03-23 08:29:13,542 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-23 09:30:03] 2026-03-23 08:29:13,542 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-23 09:30:03] 2026-03-23 08:29:13,542 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-23 09:30:03] 2026-03-23 08:29:13,542 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-23 09:30:03] 2026-03-23 08:29:13,542 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-23 09:30:03] 2026-03-23 08:29:13,542 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-23 09:30:03] 2026-03-23 08:29:13,542 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-23 09:30:03] 2026-03-23 08:29:13,542 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-23 09:30:03] 2026-03-23 08:29:13,542 | INFO     | job 7062283248 has completed (purged errors)
[2026-03-23 09:30:03] 2026-03-23 08:29:13,542 | INFO     | overall cleanup function is called
[2026-03-23 09:30:03] 2026-03-23 08:29:14,548 | INFO     | --- collectZombieJob: --- 10, [3048774]
[2026-03-23 09:30:03] 2026-03-23 08:29:14,548 | INFO     | zombie collector waiting for pid 3048774
[2026-03-23 09:30:03] 2026-03-23 08:29:14,549 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-23 09:30:03] 2026-03-23 08:29:14,549 | INFO     | collected zombie processes
[2026-03-23 09:30:03] 2026-03-23 08:29:14,549 | INFO     | will attempt to kill all subprocesses of pid=3048774
[2026-03-23 09:30:03] 2026-03-23 08:29:14,578 | INFO     | process IDs to be killed: [3048774] (in reverse order)
[2026-03-23 09:30:03] 2026-03-23 08:29:14,599 | WARNING  | found no corresponding commands to process id(s)
[2026-03-23 09:30:03] 2026-03-23 08:29:14,599 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-23 09:30:03] 2026-03-23 08:29:14,600 | INFO     | did not find any defunct processes belonging to 3048774
[2026-03-23 09:30:03] 2026-03-23 08:29:14,600 | INFO     | did not find any defunct processes belonging to 3048774
[2026-03-23 09:30:03] 2026-03-23 08:29:14,601 | INFO     | ready for new job
[2026-03-23 09:30:03] 2026-03-23 08:29:14,601 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-23 09:30:03] 2026-03-23 08:29:14,601 | INFO     | **************************************
[2026-03-23 09:30:03] 2026-03-23 08:29:14,601 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-23 09:30:03] 2026-03-23 08:29:14,601 | INFO     | **************************************
[2026-03-23 09:30:03] 2026-03-23 08:29:14,601 | INFO     | 
[2026-03-23 09:30:03] 2026-03-23 08:29:14,601 | INFO     | architecture information:
[2026-03-23 09:30:03] 2026-03-23 08:29:14,602 | INFO     | executing command: cat /etc/os-release
[2026-03-23 09:30:03] 2026-03-23 08:29:14,611 | INFO     | cat /etc/os-release:
[2026-03-23 09:30:03] NAME="CentOS Linux"
[2026-03-23 09:30:03] VERSION="7 (Core)"
[2026-03-23 09:30:03] ID="centos"
[2026-03-23 09:30:03] ID_LIKE="rhel fedora"
[2026-03-23 09:30:03] VERSION_ID="7"
[2026-03-23 09:30:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-23 09:30:03] ANSI_COLOR="0;31"
[2026-03-23 09:30:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-23 09:30:03] HOME_URL="https://www.centos.org/"
[2026-03-23 09:30:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-23 09:30:03] 
[2026-03-23 09:30:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-23 09:30:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-23 09:30:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-23 09:30:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-23 09:30:03] 
[2026-03-23 09:30:03] 2026-03-23 08:29:14,611 | INFO     | **************************************
[2026-03-23 09:30:03] 2026-03-23 08:29:15,114 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-23 09:30:03] 2026-03-23 08:29:15,126 | INFO     | sufficient remaining disk space (830503649280 B)
[2026-03-23 09:30:03] 2026-03-23 08:29:15,126 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-23 09:30:03] 2026-03-23 08:29:15,127 | INFO     | current server update state: UPDATING_FINAL
[2026-03-23 09:30:03] 2026-03-23 08:29:15,127 | INFO     | update_server=False
[2026-03-23 09:30:03] 2026-03-23 08:29:15,127 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-23 09:30:03] 2026-03-23 08:29:15,127 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-23 09:30:03] 2026-03-23 08:29:15,127 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-23 09:30:03] 2026-03-23 08:29:15,127 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-23 09:30:03] 2026-03-23 08:29:15,127 | INFO     | aborting loop
[2026-03-23 09:30:03] 2026-03-23 08:29:15,648 | INFO     | all job control threads have been joined
[2026-03-23 09:30:03] 2026-03-23 08:29:16,035 | INFO     | all data control threads have been joined
[2026-03-23 09:30:03] 2026-03-23 08:29:16,131 | INFO     | [job] retrieve thread has finished
[2026-03-23 09:30:03] 2026-03-23 08:29:16,133 | INFO     | [job] queue monitor thread has finished
[2026-03-23 09:30:03] 2026-03-23 08:29:16,133 | INFO     | [job] job monitor thread has finished
[2026-03-23 09:30:03] 2026-03-23 08:29:16,316 | INFO     | [payload] validate_post thread has finished
[2026-03-23 09:30:03] 2026-03-23 08:29:16,395 | INFO     | all payload control threads have been joined
[2026-03-23 09:30:03] 2026-03-23 08:29:16,565 | INFO     | [payload] failed_post thread has finished
[2026-03-23 09:30:03] 2026-03-23 08:29:16,654 | INFO     | [job] control thread has finished
[2026-03-23 09:30:03] 2026-03-23 08:29:16,928 | INFO     | [job] validate thread has finished
[2026-03-23 09:30:03] 2026-03-23 08:29:17,041 | INFO     | [data] control thread has finished
[2026-03-23 09:30:03] 2026-03-23 08:29:17,095 | INFO     | [payload] validate_pre thread has finished
[2026-03-23 09:30:03] 2026-03-23 08:29:17,117 | INFO     | [job] create_data_payload thread has finished
[2026-03-23 09:30:03] 2026-03-23 08:29:17,125 | INFO     | [data] copytool_in thread has finished
[2026-03-23 09:30:03] 2026-03-23 08:29:17,133 | INFO     | [data] copytool_out thread has finished
[2026-03-23 09:30:03] 2026-03-23 08:29:17,390 | INFO     | [payload] execute_payloads thread has finished
[2026-03-23 09:30:03] 2026-03-23 08:29:17,401 | INFO     | [payload] control thread has finished
[2026-03-23 09:30:03] 2026-03-23 08:29:17,761 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-23 09:30:03] 2026-03-23 08:29:21,768 | INFO     | [data] queue_monitor thread has finished
[2026-03-23 09:30:03] 2026-03-23 08:29:25,731 | INFO     | job.realtimelogging is not enabled
[2026-03-23 09:30:03] 2026-03-23 08:29:26,737 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-23 09:30:03] 2026-03-23 08:29:45,007 | INFO     | PID=3044360 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-23 09:30:03] 2026-03-23 08:29:45,008 | INFO     | found 0 job(s) in 20 queues
[2026-03-23 09:30:03] 2026-03-23 08:29:45,008 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-23 09:30:03] 2026-03-23 08:29:45,008 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-23 09:30:03] 2026-03-23 08:29:56,604 | INFO     | [monitor] cgroup control has ended
[2026-03-23 09:30:03] 2026-03-23 08:29:57,954 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139633649473344)>', '<ExcThread(monitor, started 139632901596928)>']
[2026-03-23 09:30:03] 2026-03-23 08:29:58,076 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-23 09:30:03] 2026-03-23 08:29:58,077 | INFO     | [monitor] control thread has ended
[2026-03-23 09:30:03] 2026-03-23 08:30:02,979 | INFO     | all workflow threads have been joined
[2026-03-23 09:30:03] 2026-03-23 08:30:02,980 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-23 09:30:03] 2026-03-23 08:30:02,980 | INFO     | traces error code: 0
[2026-03-23 09:30:03] 2026-03-23 08:30:02,981 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-23 09:30:03] 2026-03-23 08:30:03,023 [wrapper] ==== pilot stdout END ====
[2026-03-23 09:30:03] 2026-03-23 08:30:03,026 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-23 09:30:03] 2026-03-23 08:30:03,028 [wrapper] pilotpid: 3044360
[2026-03-23 09:30:03] 2026-03-23 08:30:03,030 [wrapper] Pilot exit status: 0
[2026-03-23 09:30:03] 2026-03-23 08:30:03,036 [wrapper] pandaids: 7062283248
[2026-03-23 09:30:03] 2026-03-23 08:30:03,049 [wrapper] cleanup supervisor_pilot 3055148 3044361
[2026-03-23 09:30:03] 2026-03-23 08:30:03,051 [wrapper] Test setup, not cleaning
[2026-03-23 09:30:03] 2026-03-23 08:30:03,053 [wrapper] apfmon messages muted
[2026-03-23 09:30:03] 2026-03-23 08:30:03,055 [wrapper] ==== wrapper stdout END ====
[2026-03-23 09:30:03] 2026-03-23 08:30:03,058 [wrapper] ==== wrapper stderr END ====
[2026-03-23 09:30:03]  *** Error codes and diagnostics ***
[2026-03-23 09:30:03]     "exeErrorCode": 0,
[2026-03-23 09:30:03]     "exeErrorDiag": "",
[2026-03-23 09:30:03]     "pilotErrorCode": 0,
[2026-03-23 09:30:03]     "pilotErrorDiag": "",
[2026-03-23 09:30:03]  *** Listing of results directory ***
[2026-03-23 09:30:03] total 446016
[2026-03-23 09:30:03] -rw-r--r-- 1 boinc boinc    585013 Mar 22 20:50 pilot3.tar.gz
[2026-03-23 09:30:03] -rwx------ 1 boinc boinc     36322 Mar 22 20:51 runpilot2-wrapper.sh
[2026-03-23 09:30:03] -rw-r--r-- 1 boinc boinc      5111 Mar 22 20:52 queuedata.json
[2026-03-23 09:30:03] -rw-r--r-- 1 boinc boinc       100 Mar 23 06:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-23 09:30:03] -rwxr-xr-x 1 boinc boinc      7986 Mar 23 06:13 run_atlas
[2026-03-23 09:30:03] -rw-r--r-- 1 boinc boinc       105 Mar 23 06:13 job.xml
[2026-03-23 09:30:03] -rw-r--r-- 2 boinc boinc 245002244 Mar 23 06:13 EVNT.49141730._000001.pool.root.1
[2026-03-23 09:30:03] -rw-r--r-- 2 boinc boinc    597535 Mar 23 06:13 input.tar.gz
[2026-03-23 09:30:03] -rw-r--r-- 2 boinc boinc     15845 Mar 23 06:13 start_atlas.sh
[2026-03-23 09:30:03] drwxrwx--x 2 boinc boinc      4096 Mar 23 06:13 shared
[2026-03-23 09:30:03] -rw-r--r-- 1 boinc boinc         0 Mar 23 06:13 boinc_setup_complete
[2026-03-23 09:30:03] -rw-r--r-- 1 boinc boinc      6205 Mar 23 06:13 init_data.xml
[2026-03-23 09:30:03] -rw-r--r-- 1 boinc boinc         0 Mar 23 06:13 boinc_lockfile
[2026-03-23 09:30:03] -rw-r--r-- 1 boinc boinc      2593 Mar 23 06:13 pandaJob.out
[2026-03-23 09:30:03] -rw------- 1 boinc boinc   1010663 Mar 23 06:13 agis_schedconf.cvmfs.json
[2026-03-23 09:30:03] -rw------- 1 boinc boinc       425 Mar 23 06:13 workernode_map.json
[2026-03-23 09:30:03] drwx------ 5 boinc boinc      4096 Mar 23 06:13 pilot3
[2026-03-23 09:30:03] -rw------- 1 boinc boinc 203802271 Mar 23 09:28 HITS.49283422._000035.pool.root.1
[2026-03-23 09:30:03] -rw-r--r-- 1 boinc boinc       530 Mar 23 09:29 boinc_task_state.xml
[2026-03-23 09:30:03] -rw------- 1 boinc boinc      1015 Mar 23 09:29 memory_monitor_summary.json
[2026-03-23 09:30:03] -rw------- 1 boinc boinc   1511579 Mar 23 09:29 agis_ddmendpoints.agis.ALL.json
[2026-03-23 09:30:03] -rw------- 1 boinc boinc    332575 Mar 23 09:29 log.49283422._000035.job.log.tgz.1
[2026-03-23 09:30:03] -rw------- 1 boinc boinc      6295 Mar 23 09:29 heartbeat.json
[2026-03-23 09:30:03] -rw------- 1 boinc boinc        95 Mar 23 09:29 pilot_heartbeat.json
[2026-03-23 09:30:03] -rw-r--r-- 1 boinc boinc        28 Mar 23 09:30 wrapper_checkpoint.txt
[2026-03-23 09:30:03] -rw-r--r-- 1 boinc boinc      8192 Mar 23 09:30 boinc_mmap_file
[2026-03-23 09:30:03] -rw------- 1 boinc boinc      4820 Mar 23 09:30 pilotlog.txt
[2026-03-23 09:30:03] -rw------- 1 boinc boinc   1661457 Mar 23 09:30 log.49283422._000035.job.log.1
[2026-03-23 09:30:03] -rw------- 1 boinc boinc       357 Mar 23 09:30 output.list
[2026-03-23 09:30:03] -rw-r--r-- 1 boinc boinc       620 Mar 23 09:30 runtime_log
[2026-03-23 09:30:03] -rw------- 1 boinc boinc   2007040 Mar 23 09:30 result.tar.gz
[2026-03-23 09:30:03] -rw-r--r-- 1 boinc boinc      8897 Mar 23 09:30 runtime_log.err
[2026-03-23 09:30:03] -rw------- 1 boinc boinc       660 Mar 23 09:30 OkOLDmz0dO9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmjP6LDmZ9EDMn.diag
[2026-03-23 09:30:03] -rw-r--r-- 1 boinc boinc     12635 Mar 23 09:30 stderr.txt
[2026-03-23 09:30:03] HITS file was successfully produced:
[2026-03-23 09:30:03] -rw------- 1 boinc boinc 203802271 Mar 23 09:28 shared/HITS.pool.root.1
[2026-03-23 09:30:03]  *** Contents of shared directory: ***
[2026-03-23 09:30:03] total 440856
[2026-03-23 09:30:03] -rw-r--r-- 2 boinc boinc 245002244 Mar 23 06:13 ATLAS.root_0
[2026-03-23 09:30:03] -rw-r--r-- 2 boinc boinc    597535 Mar 23 06:13 input.tar.gz
[2026-03-23 09:30:03] -rw-r--r-- 2 boinc boinc     15845 Mar 23 06:13 start_atlas.sh
[2026-03-23 09:30:03] -rw------- 1 boinc boinc 203802271 Mar 23 09:28 HITS.pool.root.1
[2026-03-23 09:30:03] -rw------- 1 boinc boinc   2007040 Mar 23 09:30 result.tar.gz
09:30:04 (3040327): run_atlas exited; CPU time 22855.609159
09:30:04 (3040327): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN