Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:40:36 (972532): wrapper (7.7.26015): starting
05:40:36 (972532): wrapper: running run_atlas (--nthreads 12)
[2026-03-23 05:40:36] Arguments: --nthreads 12
[2026-03-23 05:40:36] Threads: 12
[2026-03-23 05:40:36] Checking for CVMFS
[2026-03-23 05:40:36] No cvmfs_config command found, will try listing directly
[2026-03-23 05:40:36] CVMFS is ok
[2026-03-23 05:40:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-23 05:40:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-23 05:40:36] Further information can be found at the LHC@home message board.
[2026-03-23 05:40:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-23 05:40:36] Checking for apptainer binary...
[2026-03-23 05:40:36] which: no apptainer in ((null))
[2026-03-23 05:40:36] apptainer is not installed, using version from CVMFS
[2026-03-23 05:40:36] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-23 05:40:36] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot168/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut21.grid.cesnet.cz
[2026-03-23 05:40:36] apptainer works
[2026-03-23 05:40:36] Set ATHENA_PROC_NUMBER=12
[2026-03-23 05:40:36] Set ATHENA_CORE_NUMBER=12
[2026-03-23 05:40:36] Starting ATLAS job with PandaID=7057139952
[2026-03-23 05:40:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot168/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-23 06:39:59]  *** The last 200 lines of the pilot log: ***
[2026-03-23 06:39:59]  is_altstaged=None
[2026-03-23 06:39:59]  is_tar=False
[2026-03-23 06:39:59]  lfn=log.49190476._000018.job.log.tgz.1
[2026-03-23 06:39:59]  mtime=0
[2026-03-23 06:39:59]  protocol_id=None
[2026-03-23 06:39:59]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-23 06:39:59]  replicas=None
[2026-03-23 06:39:59]  scope=mc23_13p6TeV
[2026-03-23 06:39:59]  status=None
[2026-03-23 06:39:59]  status_code=0
[2026-03-23 06:39:59]  storage_token=
[2026-03-23 06:39:59]  surl=/var/lib/boinc/var/slot168/slots/0/PanDA_Pilot-7057139952/log.49190476._000018.job.log.tgz.1
[2026-03-23 06:39:59]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/83/19/log.49190476._000018.job.log.tgz.1
[2026-03-23 06:39:59]  workdir=None
[2026-03-23 06:39:59] ]
[2026-03-23 06:39:59] 2026-03-23 05:39:08,864 | INFO     | transferring file log.49190476._000018.job.log.tgz.1 from /var/lib/boinc/var/slot168/slots/0/PanDA_Pilot-7057139952/log.49190476._000018.job.log.tgz.1 to /var/lib/
[2026-03-23 06:39:59] 2026-03-23 05:39:08,865 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot168/slots/0/PanDA_Pilot-7057139952/log.49190476._000018.job.log.tgz.1 /var/lib/boinc/var/slot168/slots/0/
[2026-03-23 06:39:59] 2026-03-23 05:39:08,884 | INFO     | adding to output.list: log.49190476._000018.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/83/19/log.49190476._000018.job.log.tg
[2026-03-23 06:39:59] 2026-03-23 05:39:08,884 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-23 06:39:59] 2026-03-23 05:39:08,884 | INFO     | summary of transferred files:
[2026-03-23 06:39:59] 2026-03-23 05:39:08,885 | INFO     |  -- lfn=log.49190476._000018.job.log.tgz.1, status_code=0, status=transferred
[2026-03-23 06:39:59] 2026-03-23 05:39:08,885 | INFO     | stage-out finished correctly
[2026-03-23 06:39:59] 2026-03-23 05:39:09,323 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-23 06:39:59] 2026-03-23 05:39:10,160 | INFO     | time since job start (3503s) is within the limit (345600.0s)
[2026-03-23 06:39:59] 2026-03-23 05:39:11,142 | INFO     | job 7057139952 has state=finished
[2026-03-23 06:39:59] 2026-03-23 05:39:11,142 | INFO     | preparing for final server update for job 7057139952 in state='finished'
[2026-03-23 06:39:59] 2026-03-23 05:39:11,142 | INFO     | reading metadata from: /var/lib/boinc/var/slot168/slots/0/PanDA_Pilot-7057139952/jobReport.json
[2026-03-23 06:39:59] 2026-03-23 05:39:11,144 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot168/slots/0/workernode_map.json
[2026-03-23 06:39:59] 2026-03-23 05:39:11,144 | INFO     | this job has now completed (state=finished)
[2026-03-23 06:39:59] 2026-03-23 05:39:11,144 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-23 06:39:59] 2026-03-23 05:39:11,144 | INFO     | log transfer has been attempted: DONE
[2026-03-23 06:39:59] 2026-03-23 05:39:11,144 | INFO     | job 7057139952 has finished - writing final server update
[2026-03-23 06:39:59] 2026-03-23 05:39:11,144 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3586416/.job.ad'
[2026-03-23 06:39:59] 2026-03-23 05:39:11,145 | INFO     | total number of processed events: 400 (read)
[2026-03-23 06:39:59] 2026-03-23 05:39:11,163 | INFO     | using path: /var/lib/boinc/var/slot168/slots/0/PanDA_Pilot-7057139952/memory_monitor_summary.json (trf name=prmon)
[2026-03-23 06:39:59] 2026-03-23 05:39:11,163 | INFO     | extracted standard info from prmon json
[2026-03-23 06:39:59] 2026-03-23 05:39:11,163 | INFO     | extracted standard memory fields from prmon json
[2026-03-23 06:39:59] 2026-03-23 05:39:11,163 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-23 06:39:59] 2026-03-23 05:39:11,163 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-23 06:39:59] 2026-03-23 05:39:11,163 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-23 06:39:59] 2026-03-23 05:39:11,164 | INFO     | fitting pss+swap vs Time
[2026-03-23 06:39:59] 2026-03-23 05:39:11,164 | INFO     | sum of square deviations: 38744912.5
[2026-03-23 06:39:59] 2026-03-23 05:39:11,164 | INFO     | sum of deviations: -134882163.0
[2026-03-23 06:39:59] 2026-03-23 05:39:11,164 | INFO     | mean x: 1774242668.5
[2026-03-23 06:39:59] 2026-03-23 05:39:11,165 | INFO     | mean y: 2744940.48
[2026-03-23 06:39:59] 2026-03-23 05:39:11,165 | INFO     | intersect: 6179393005.285204
[2026-03-23 06:39:59] 2026-03-23 05:39:11,165 | INFO     | chi2: 0.0006565521846029891
[2026-03-23 06:39:59] 2026-03-23 05:39:11,165 | INFO     | current memory leak: -3.48 B/s (using 50 data points, chi2=0.00)
[2026-03-23 06:39:59] 2026-03-23 05:39:11,165 | INFO     | could have reported an average CPU frequency of 3602 MHz (5 samples)
[2026-03-23 06:39:59] 2026-03-23 05:39:11,165 | INFO     | ..............................
[2026-03-23 06:39:59] 2026-03-23 05:39:11,165 | INFO     | . Timing measurements:
[2026-03-23 06:39:59] 2026-03-23 05:39:11,165 | INFO     | . get job = 0 s
[2026-03-23 06:39:59] 2026-03-23 05:39:11,165 | INFO     | . initial setup = 4 s
[2026-03-23 06:39:59] 2026-03-23 05:39:11,165 | INFO     | . payload setup = 6 s
[2026-03-23 06:39:59] 2026-03-23 05:39:11,165 | INFO     | . stage-in = 0 s
[2026-03-23 06:39:59] 2026-03-23 05:39:11,165 | INFO     | . payload execution = 3479 s
[2026-03-23 06:39:59] 2026-03-23 05:39:11,165 | INFO     | . stage-out = 0 s
[2026-03-23 06:39:59] 2026-03-23 05:39:11,165 | INFO     | . log creation = 0 s
[2026-03-23 06:39:59] 2026-03-23 05:39:11,165 | INFO     | ..............................
[2026-03-23 06:39:59] 2026-03-23 05:39:11,213 | INFO     | 
[2026-03-23 06:39:59] 2026-03-23 05:39:11,213 | INFO     | job summary report
[2026-03-23 06:39:59] 2026-03-23 05:39:11,213 | INFO     | --------------------------------------------------
[2026-03-23 06:39:59] 2026-03-23 05:39:11,213 | INFO     | PanDA job id: 7057139952
[2026-03-23 06:39:59] 2026-03-23 05:39:11,213 | INFO     | task id: 49190476
[2026-03-23 06:39:59] 2026-03-23 05:39:11,213 | INFO     | errors: (none)
[2026-03-23 06:39:59] 2026-03-23 05:39:11,214 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-23 06:39:59] 2026-03-23 05:39:11,214 | INFO     | pilot state: finished 
[2026-03-23 06:39:59] 2026-03-23 05:39:11,214 | INFO     | transexitcode: 0
[2026-03-23 06:39:59] 2026-03-23 05:39:11,214 | INFO     | exeerrorcode: 0
[2026-03-23 06:39:59] 2026-03-23 05:39:11,214 | INFO     | exeerrordiag: 
[2026-03-23 06:39:59] 2026-03-23 05:39:11,214 | INFO     | exitcode: 0
[2026-03-23 06:39:59] 2026-03-23 05:39:11,214 | INFO     | exitmsg: OK
[2026-03-23 06:39:59] 2026-03-23 05:39:11,214 | INFO     | cpuconsumptiontime: 38553 s
[2026-03-23 06:39:59] 2026-03-23 05:39:11,214 | INFO     | nevents: 400
[2026-03-23 06:39:59] 2026-03-23 05:39:11,214 | INFO     | neventsw: 0
[2026-03-23 06:39:59] 2026-03-23 05:39:11,214 | INFO     | pid: 988986
[2026-03-23 06:39:59] 2026-03-23 05:39:11,214 | INFO     | pgrp: 988986
[2026-03-23 06:39:59] 2026-03-23 05:39:11,214 | INFO     | corecount: 12
[2026-03-23 06:39:59] 2026-03-23 05:39:11,214 | INFO     | event service: False
[2026-03-23 06:39:59] 2026-03-23 05:39:11,214 | INFO     | sizes: {0: 2279848, 1: 2280309, 11: 2280309, 3490: 2306010, 3491: 2315088, 3493: 2315258}
[2026-03-23 06:39:59] 2026-03-23 05:39:11,214 | INFO     | --------------------------------------------------
[2026-03-23 06:39:59] 2026-03-23 05:39:11,214 | INFO     | 
[2026-03-23 06:39:59] 2026-03-23 05:39:11,214 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot168/slots/0
[2026-03-23 06:39:59] 2026-03-23 05:39:11,233 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-23 06:39:59] 2026-03-23 05:39:11,233 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-23 06:39:59] 2026-03-23 05:39:11,233 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-23 06:39:59] 2026-03-23 05:39:11,233 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-23 06:39:59] 2026-03-23 05:39:11,233 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-23 06:39:59] 2026-03-23 05:39:11,233 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-23 06:39:59] 2026-03-23 05:39:11,233 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-23 06:39:59] 2026-03-23 05:39:11,233 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-23 06:39:59] 2026-03-23 05:39:11,233 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-23 06:39:59] 2026-03-23 05:39:11,233 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-23 06:39:59] 2026-03-23 05:39:11,233 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-23 06:39:59] 2026-03-23 05:39:11,233 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-23 06:39:59] 2026-03-23 05:39:11,234 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-23 06:39:59] 2026-03-23 05:39:11,234 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-23 06:39:59] 2026-03-23 05:39:11,234 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-23 06:39:59] 2026-03-23 05:39:11,234 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-23 06:39:59] 2026-03-23 05:39:11,234 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-23 06:39:59] 2026-03-23 05:39:11,234 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-23 06:39:59] 2026-03-23 05:39:11,234 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-23 06:39:59] 2026-03-23 05:39:11,234 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-23 06:39:59] 2026-03-23 05:39:11,234 | INFO     | job 7057139952 has completed (purged errors)
[2026-03-23 06:39:59] 2026-03-23 05:39:11,234 | INFO     | overall cleanup function is called
[2026-03-23 06:39:59] 2026-03-23 05:39:12,087 | WARNING  | process 988986 can no longer be monitored (due to stat problems) - aborting
[2026-03-23 06:39:59] 2026-03-23 05:39:12,241 | INFO     | --- collectZombieJob: --- 10, [988986]
[2026-03-23 06:39:59] 2026-03-23 05:39:12,242 | INFO     | zombie collector waiting for pid 988986
[2026-03-23 06:39:59] 2026-03-23 05:39:12,242 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-23 06:39:59] 2026-03-23 05:39:12,242 | INFO     | collected zombie processes
[2026-03-23 06:39:59] 2026-03-23 05:39:12,242 | INFO     | will attempt to kill all subprocesses of pid=988986
[2026-03-23 06:39:59] 2026-03-23 05:39:12,602 | INFO     | using path: /var/lib/boinc/var/slot168/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-23 06:39:59] 2026-03-23 05:39:13,385 | INFO     | process IDs to be killed: [988986] (in reverse order)
[2026-03-23 06:39:59] 2026-03-23 05:39:13,525 | INFO     | number of running child processes to parent process 988986: 1
[2026-03-23 06:39:59] 2026-03-23 05:39:13,525 | INFO     | maximum number of monitored processes: 6
[2026-03-23 06:39:59] 2026-03-23 05:39:13,525 | INFO     | aborting job monitoring since job object (job id=7057139952) has expired
[2026-03-23 06:39:59] 2026-03-23 05:39:13,554 | WARNING  | found no corresponding commands to process id(s)
[2026-03-23 06:39:59] 2026-03-23 05:39:13,554 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-23 06:39:59] 2026-03-23 05:39:13,579 | INFO     | did not find any defunct processes belonging to 988986
[2026-03-23 06:39:59] 2026-03-23 05:39:13,603 | INFO     | did not find any defunct processes belonging to 988986
[2026-03-23 06:39:59] 2026-03-23 05:39:13,603 | INFO     | ready for new job
[2026-03-23 06:39:59] 2026-03-23 05:39:13,603 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-23 06:39:59] 2026-03-23 05:39:13,604 | INFO     | **************************************
[2026-03-23 06:39:59] 2026-03-23 05:39:13,604 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-23 06:39:59] 2026-03-23 05:39:13,604 | INFO     | **************************************
[2026-03-23 06:39:59] 2026-03-23 05:39:13,604 | INFO     | 
[2026-03-23 06:39:59] 2026-03-23 05:39:13,610 | INFO     | architecture information:
[2026-03-23 06:39:59] 2026-03-23 05:39:13,610 | INFO     | executing command: cat /etc/os-release
[2026-03-23 06:39:59] 2026-03-23 05:39:13,624 | INFO     | cat /etc/os-release:
[2026-03-23 06:39:59] NAME="CentOS Linux"
[2026-03-23 06:39:59] VERSION="7 (Core)"
[2026-03-23 06:39:59] ID="centos"
[2026-03-23 06:39:59] ID_LIKE="rhel fedora"
[2026-03-23 06:39:59] VERSION_ID="7"
[2026-03-23 06:39:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-23 06:39:59] ANSI_COLOR="0;31"
[2026-03-23 06:39:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-23 06:39:59] HOME_URL="https://www.centos.org/"
[2026-03-23 06:39:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-23 06:39:59] 
[2026-03-23 06:39:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-23 06:39:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-23 06:39:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-23 06:39:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-23 06:39:59] 
[2026-03-23 06:39:59] 2026-03-23 05:39:13,624 | INFO     | **************************************
[2026-03-23 06:39:59] 2026-03-23 05:39:14,128 | INFO     | executing command: df -mP /var/lib/boinc/var/slot168/slots/0
[2026-03-23 06:39:59] 2026-03-23 05:39:14,150 | INFO     | sufficient remaining disk space (23921164288 B)
[2026-03-23 06:39:59] 2026-03-23 05:39:14,151 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-23 06:39:59] 2026-03-23 05:39:14,151 | INFO     | current server update state: UPDATING_FINAL
[2026-03-23 06:39:59] 2026-03-23 05:39:14,151 | INFO     | update_server=False
[2026-03-23 06:39:59] 2026-03-23 05:39:14,151 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-23 06:39:59] 2026-03-23 05:39:14,151 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-23 06:39:59] 2026-03-23 05:39:14,152 | INFO     | will abort loop
[2026-03-23 06:39:59] 2026-03-23 05:39:14,404 | INFO     | all payload control threads have been joined
[2026-03-23 06:39:59] 2026-03-23 05:39:14,443 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-23 06:39:59] 2026-03-23 05:39:14,460 | INFO     | all data control threads have been joined
[2026-03-23 06:39:59] 2026-03-23 05:39:14,914 | INFO     | all job control threads have been joined
[2026-03-23 06:39:59] 2026-03-23 05:39:15,156 | INFO     | [job] retrieve thread has finished
[2026-03-23 06:39:59] 2026-03-23 05:39:15,157 | INFO     | [job] job monitor thread has finished
[2026-03-23 06:39:59] 2026-03-23 05:39:15,175 | INFO     | [payload] failed_post thread has finished
[2026-03-23 06:39:59] 2026-03-23 05:39:15,252 | INFO     | [payload] execute_payloads thread has finished
[2026-03-23 06:39:59] 2026-03-23 05:39:15,376 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-23 06:39:59] 2026-03-23 05:39:15,386 | INFO     | [data] copytool_in thread has finished
[2026-03-23 06:39:59] 2026-03-23 05:39:15,410 | INFO     | [payload] control thread has finished
[2026-03-23 06:39:59] 2026-03-23 05:39:15,465 | INFO     | [data] control thread has finished
[2026-03-23 06:39:59] 2026-03-23 05:39:15,721 | INFO     | [payload] validate_post thread has finished
[2026-03-23 06:39:59] 2026-03-23 05:39:15,919 | INFO     | [job] control thread has finished
[2026-03-23 06:39:59] 2026-03-23 05:39:16,221 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-23 06:39:59] 2026-03-23 05:39:16,448 | INFO     | [data] copytool_out thread has finished
[2026-03-23 06:39:59] 2026-03-23 05:39:16,521 | INFO     | [job] validate thread has finished
[2026-03-23 06:39:59] 2026-03-23 05:39:16,597 | INFO     | [job] create_data_payload thread has finished
[2026-03-23 06:39:59] 2026-03-23 05:39:16,614 | INFO     | [payload] validate_pre thread has finished
[2026-03-23 06:39:59] 2026-03-23 05:39:17,226 | INFO     | [job] queue monitor thread has finished
[2026-03-23 06:39:59] 2026-03-23 05:39:19,382 | INFO     | [data] queue_monitor thread has finished
[2026-03-23 06:39:59] 2026-03-23 05:39:24,861 | INFO     | job.realtimelogging is not enabled
[2026-03-23 06:39:59] 2026-03-23 05:39:25,867 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-23 06:39:59] 2026-03-23 05:39:43,699 | INFO     | PID=977112 has CPU usage=9.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-23 06:39:59] 2026-03-23 05:39:43,700 | INFO     | .. there are 15 such processes running
[2026-03-23 06:39:59] 2026-03-23 05:39:43,700 | INFO     | found 0 job(s) in 20 queues
[2026-03-23 06:39:59] 2026-03-23 05:39:43,700 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-23 06:39:59] 2026-03-23 05:39:43,700 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-23 06:39:59] 2026-03-23 05:39:52,755 | INFO     | [monitor] cgroup control has ended
[2026-03-23 06:39:59] 2026-03-23 05:39:54,104 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23266297722688)>', '<ExcThread(monitor, started 23266057266944)>']
[2026-03-23 06:39:59] 2026-03-23 05:39:54,742 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-23 06:39:59] 2026-03-23 05:39:54,743 | INFO     | [monitor] control thread has ended
[2026-03-23 06:39:59] 2026-03-23 05:39:59,130 | INFO     | all workflow threads have been joined
[2026-03-23 06:39:59] 2026-03-23 05:39:59,130 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-23 06:39:59] 2026-03-23 05:39:59,130 | INFO     | traces error code: 0
[2026-03-23 06:39:59] 2026-03-23 05:39:59,130 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-23 06:39:59] 2026-03-23 05:39:59,272 [wrapper] ==== pilot stdout END ====
[2026-03-23 06:39:59] 2026-03-23 05:39:59,274 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-23 06:39:59] 2026-03-23 05:39:59,278 [wrapper] pilotpid: 977112
[2026-03-23 06:39:59] 2026-03-23 05:39:59,281 [wrapper] Pilot exit status: 0
[2026-03-23 06:39:59] 2026-03-23 05:39:59,292 [wrapper] pandaids: 7057139952
[2026-03-23 06:39:59] 2026-03-23 05:39:59,399 [wrapper] cleanup supervisor_pilot 1183259 977113
[2026-03-23 06:39:59] 2026-03-23 05:39:59,401 [wrapper] Test setup, not cleaning
[2026-03-23 06:39:59] 2026-03-23 05:39:59,404 [wrapper] apfmon messages muted
[2026-03-23 06:39:59] 2026-03-23 05:39:59,406 [wrapper] ==== wrapper stdout END ====
[2026-03-23 06:39:59] 2026-03-23 05:39:59,408 [wrapper] ==== wrapper stderr END ====
[2026-03-23 06:39:59]  *** Error codes and diagnostics ***
[2026-03-23 06:39:59]     "exeErrorCode": 0,
[2026-03-23 06:39:59]     "exeErrorDiag": "",
[2026-03-23 06:39:59]     "pilotErrorCode": 0,
[2026-03-23 06:39:59]     "pilotErrorDiag": "",
[2026-03-23 06:39:59]  *** Listing of results directory ***
[2026-03-23 06:39:59] total 488548
[2026-03-23 06:39:59] -rwx------. 1 boinc boinc     36322 Mar 22 15:16 runpilot2-wrapper.sh
[2026-03-23 06:39:59] -rw-r--r--. 1 boinc boinc    585013 Mar 22 17:44 pilot3.tar.gz
[2026-03-23 06:39:59] -rw-r--r--. 1 boinc boinc      5111 Mar 22 17:51 queuedata.json
[2026-03-23 06:39:59] -rw-r--r--. 1 boinc boinc       100 Mar 23 05:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-23 06:39:59] -rwxr-xr-x. 1 boinc boinc      7986 Mar 23 05:40 run_atlas
[2026-03-23 06:39:59] -rw-r--r--. 1 boinc boinc       105 Mar 23 05:40 job.xml
[2026-03-23 06:39:59] -rw-r--r--. 2 boinc boinc 255248109 Mar 23 05:40 EVNT.49123494._000001.pool.root.1
[2026-03-23 06:39:59] -rw-r--r--. 2 boinc boinc     15845 Mar 23 05:40 start_atlas.sh
[2026-03-23 06:39:59] drwxrwx--x. 2 boinc boinc      4096 Mar 23 05:40 shared
[2026-03-23 06:39:59] -rw-r--r--. 2 boinc boinc    597536 Mar 23 05:40 input.tar.gz
[2026-03-23 06:39:59] -rw-r--r--. 1 boinc boinc      6710 Mar 23 05:40 init_data.xml
[2026-03-23 06:39:59] -rw-r--r--. 1 boinc boinc         0 Mar 23 05:40 boinc_lockfile
[2026-03-23 06:39:59] -rw-r--r--. 1 boinc boinc      2587 Mar 23 05:40 pandaJob.out
[2026-03-23 06:39:59] -rw-------. 1 boinc boinc   1010663 Mar 23 05:40 agis_schedconf.cvmfs.json
[2026-03-23 06:39:59] -rw-------. 1 boinc boinc   1511579 Mar 23 05:40 agis_ddmendpoints.agis.ALL.json
[2026-03-23 06:39:59] -rw-------. 1 boinc boinc       445 Mar 23 05:40 workernode_map.json
[2026-03-23 06:39:59] drwx------. 5 boinc boinc      4096 Mar 23 05:40 pilot3
[2026-03-23 06:39:59] -rw-------. 1 boinc boinc 239271547 Mar 23 06:38 HITS.49190476._000018.pool.root.1
[2026-03-23 06:39:59] -rw-------. 1 boinc boinc        95 Mar 23 06:38 pilot_heartbeat.json
[2026-03-23 06:39:59] -rw-r--r--. 1 boinc boinc       529 Mar 23 06:38 boinc_task_state.xml
[2026-03-23 06:39:59] -rw-------. 1 boinc boinc      1026 Mar 23 06:39 memory_monitor_summary.json
[2026-03-23 06:39:59] -rw-------. 1 boinc boinc    375762 Mar 23 06:39 log.49190476._000018.job.log.tgz.1
[2026-03-23 06:39:59] -rw-------. 1 boinc boinc      6344 Mar 23 06:39 heartbeat.json
[2026-03-23 06:39:59] -rw-r--r--. 1 boinc boinc      8192 Mar 23 06:39 boinc_mmap_file
[2026-03-23 06:39:59] -rw-r--r--. 1 boinc boinc        27 Mar 23 06:39 wrapper_checkpoint.txt
[2026-03-23 06:39:59] -rw-------. 1 boinc boinc      4903 Mar 23 06:39 pilotlog.txt
[2026-03-23 06:39:59] -rw-------. 1 boinc boinc    532918 Mar 23 06:39 log.49190476._000018.job.log.1
[2026-03-23 06:39:59] -rw-------. 1 boinc boinc       357 Mar 23 06:39 output.list
[2026-03-23 06:39:59] -rw-r--r--. 1 boinc boinc       620 Mar 23 06:39 runtime_log
[2026-03-23 06:39:59] -rw-------. 1 boinc boinc    921600 Mar 23 06:39 result.tar.gz
[2026-03-23 06:39:59] -rw-r--r--. 1 boinc boinc      9223 Mar 23 06:39 runtime_log.err
[2026-03-23 06:39:59] -rw-------. 1 boinc boinc       663 Mar 23 06:39 3ztKDmdmYO9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmRR4LDmE42nzm.diag
[2026-03-23 06:39:59] -rw-r--r--. 1 boinc boinc     21339 Mar 23 06:39 stderr.txt
[2026-03-23 06:39:59] HITS file was successfully produced:
[2026-03-23 06:39:59] -rw-------. 1 boinc boinc 239271547 Mar 23 06:38 shared/HITS.pool.root.1
[2026-03-23 06:39:59]  *** Contents of shared directory: ***
[2026-03-23 06:39:59] total 484440
[2026-03-23 06:39:59] -rw-r--r--. 2 boinc boinc 255248109 Mar 23 05:40 ATLAS.root_0
[2026-03-23 06:39:59] -rw-r--r--. 2 boinc boinc     15845 Mar 23 05:40 start_atlas.sh
[2026-03-23 06:39:59] -rw-r--r--. 2 boinc boinc    597536 Mar 23 05:40 input.tar.gz
[2026-03-23 06:39:59] -rw-------. 1 boinc boinc 239271547 Mar 23 06:38 HITS.pool.root.1
[2026-03-23 06:39:59] -rw-------. 1 boinc boinc    921600 Mar 23 06:39 result.tar.gz
06:40:00 (972532): run_atlas exited; CPU time 38665.230704
06:40:00 (972532): called boinc_finish(0)

</stderr_txt>
]]>

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