Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:28:28 (2993867): wrapper (7.7.26015): starting
18:28:28 (2993867): wrapper: running run_atlas (--nthreads 2)
[2026-03-22 18:28:28] Arguments: --nthreads 2
[2026-03-22 18:28:28] Threads: 2
[2026-03-22 18:28:28] Checking for CVMFS
[2026-03-22 18:28:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-22 18:28:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-22 18:28:29] Running cvmfs_config stat atlas.cern.ch
[2026-03-22 18:28:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-22 18:28:29] 2.9.2.0 2994062 0 30064 157585 4 1 31457335 36864001 0 130560 0 0 0.000 1337 10611 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-22 18:28:29] CVMFS is ok
[2026-03-22 18:28:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-22 18:28:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-22 18:28:29] Further information can be found at the LHC@home message board.
[2026-03-22 18:28:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-22 18:28:29] Checking for apptainer binary...
[2026-03-22 18:28:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-22 18:28:29] Running /usr/bin/apptainer --version
[2026-03-22 18:28:29] apptainer version 1.4.1-1.1
[2026-03-22 18:28:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-22 18:28:29] thA389
[2026-03-22 18:28:29] apptainer works
[2026-03-22 18:28:29] Set ATHENA_PROC_NUMBER=2
[2026-03-22 18:28:29] Set ATHENA_CORE_NUMBER=2
[2026-03-22 18:28:29] Starting ATLAS job with PandaID=7057011391
[2026-03-22 18:28:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-22 23:04:16]  *** The last 200 lines of the pilot log: ***
[2026-03-22 23:04:16] 2026-03-22 22:03:26,741 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-22 23:04:16] 2026-03-22 22:03:26,741 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-22 23:04:16] 2026-03-22 22:03:26,741 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-22 23:04:16] 2026-03-22 22:03:26,741 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-22 23:04:16] 2026-03-22 22:03:26,741 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-22 23:04:16] 2026-03-22 22:03:26,741 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-22 23:04:16] 2026-03-22 22:03:26,741 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-22 23:04:16] 2026-03-22 22:03:26,741 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-22 23:04:16] 2026-03-22 22:03:26,741 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-22 23:04:16] 2026-03-22 22:03:26,741 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-22 23:04:16] 2026-03-22 22:03:26,741 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-22 23:04:16] 2026-03-22 22:03:26,741 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-22 23:04:16] 2026-03-22 22:03:26,741 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-22 23:04:16] 2026-03-22 22:03:26,741 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-22 23:04:16] 2026-03-22 22:03:26,741 | INFO     | job 7057011391 has completed (purged errors)
[2026-03-22 23:04:16] 2026-03-22 22:03:26,741 | INFO     | overall cleanup function is called
[2026-03-22 23:04:16] 2026-03-22 22:03:27,747 | INFO     | --- collectZombieJob: --- 10, [3002548]
[2026-03-22 23:04:16] 2026-03-22 22:03:27,748 | INFO     | zombie collector waiting for pid 3002548
[2026-03-22 23:04:16] 2026-03-22 22:03:27,748 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-22 23:04:16] 2026-03-22 22:03:27,748 | INFO     | collected zombie processes
[2026-03-22 23:04:16] 2026-03-22 22:03:27,748 | INFO     | will attempt to kill all subprocesses of pid=3002548
[2026-03-22 23:04:16] 2026-03-22 22:03:27,776 | INFO     | process IDs to be killed: [3002548] (in reverse order)
[2026-03-22 23:04:16] 2026-03-22 22:03:27,797 | WARNING  | found no corresponding commands to process id(s)
[2026-03-22 23:04:16] 2026-03-22 22:03:27,797 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-22 23:04:16] 2026-03-22 22:03:27,798 | INFO     | did not find any defunct processes belonging to 3002548
[2026-03-22 23:04:16] 2026-03-22 22:03:27,798 | INFO     | did not find any defunct processes belonging to 3002548
[2026-03-22 23:04:16] 2026-03-22 22:03:27,798 | INFO     | ready for new job
[2026-03-22 23:04:16] 2026-03-22 22:03:27,798 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-22 23:04:16] 2026-03-22 22:03:27,799 | INFO     | **************************************
[2026-03-22 23:04:16] 2026-03-22 22:03:27,799 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-22 23:04:16] 2026-03-22 22:03:27,799 | INFO     | **************************************
[2026-03-22 23:04:16] 2026-03-22 22:03:27,799 | INFO     | 
[2026-03-22 23:04:16] 2026-03-22 22:03:27,799 | INFO     | architecture information:
[2026-03-22 23:04:16] 2026-03-22 22:03:27,800 | INFO     | executing command: cat /etc/os-release
[2026-03-22 23:04:16] 2026-03-22 22:03:27,808 | INFO     | cat /etc/os-release:
[2026-03-22 23:04:16] NAME="CentOS Linux"
[2026-03-22 23:04:16] VERSION="7 (Core)"
[2026-03-22 23:04:16] ID="centos"
[2026-03-22 23:04:16] ID_LIKE="rhel fedora"
[2026-03-22 23:04:16] VERSION_ID="7"
[2026-03-22 23:04:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-22 23:04:16] ANSI_COLOR="0;31"
[2026-03-22 23:04:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-22 23:04:16] HOME_URL="https://www.centos.org/"
[2026-03-22 23:04:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-22 23:04:16] 
[2026-03-22 23:04:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-22 23:04:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-22 23:04:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-22 23:04:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-22 23:04:16] 
[2026-03-22 23:04:16] 2026-03-22 22:03:27,809 | INFO     | **************************************
[2026-03-22 23:04:16] 2026-03-22 22:03:28,312 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-22 23:04:16] 2026-03-22 22:03:28,324 | INFO     | sufficient remaining disk space (831349850112 B)
[2026-03-22 23:04:16] 2026-03-22 22:03:28,324 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-22 23:04:16] 2026-03-22 22:03:28,324 | INFO     | current server update state: UPDATING_FINAL
[2026-03-22 23:04:16] 2026-03-22 22:03:28,324 | INFO     | update_server=False
[2026-03-22 23:04:16] 2026-03-22 22:03:28,324 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-22 23:04:16] 2026-03-22 22:03:28,324 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-22 23:04:16] 2026-03-22 22:03:28,324 | INFO     | aborting loop
[2026-03-22 23:04:16] 2026-03-22 22:03:28,324 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-22 23:04:16] 2026-03-22 22:03:28,324 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-22 23:04:16] 2026-03-22 22:03:28,325 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-22 23:04:16] 2026-03-22 22:03:28,325 | INFO     | found 0 job(s) in 20 queues
[2026-03-22 23:04:16] 2026-03-22 22:03:28,325 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-22 23:04:16] 2026-03-22 22:03:28,325 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-22 23:04:16] 2026-03-22 22:03:28,747 | INFO     | all payload control threads have been joined
[2026-03-22 23:04:16] 2026-03-22 22:03:28,835 | INFO     | all data control threads have been joined
[2026-03-22 23:04:16] 2026-03-22 22:03:28,883 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-22 23:04:16] 2026-03-22 22:03:28,954 | INFO     | all job control threads have been joined
[2026-03-22 23:04:16] 2026-03-22 22:03:29,330 | INFO     | [job] retrieve thread has finished
[2026-03-22 23:04:16] 2026-03-22 22:03:29,331 | INFO     | [job] job monitor thread has finished
[2026-03-22 23:04:16] 2026-03-22 22:03:29,332 | INFO     | [job] queue monitor thread has finished
[2026-03-22 23:04:16] 2026-03-22 22:03:29,439 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-22 23:04:16] 2026-03-22 22:03:29,442 | INFO     | [payload] validate_post thread has finished
[2026-03-22 23:04:16] 2026-03-22 22:03:29,753 | INFO     | [payload] control thread has finished
[2026-03-22 23:04:16] 2026-03-22 22:03:29,841 | INFO     | [data] control thread has finished
[2026-03-22 23:04:16] 2026-03-22 22:03:29,960 | INFO     | [job] control thread has finished
[2026-03-22 23:04:16] 2026-03-22 22:03:30,378 | INFO     | [job] validate thread has finished
[2026-03-22 23:04:16] 2026-03-22 22:03:30,497 | INFO     | [payload] validate_pre thread has finished
[2026-03-22 23:04:16] 2026-03-22 22:03:30,507 | INFO     | [payload] failed_post thread has finished
[2026-03-22 23:04:16] 2026-03-22 22:03:30,523 | INFO     | [job] create_data_payload thread has finished
[2026-03-22 23:04:16] 2026-03-22 22:03:30,658 | INFO     | [data] copytool_in thread has finished
[2026-03-22 23:04:16] 2026-03-22 22:03:30,701 | INFO     | [payload] execute_payloads thread has finished
[2026-03-22 23:04:16] 2026-03-22 22:03:30,890 | INFO     | [data] copytool_out thread has finished
[2026-03-22 23:04:16] 2026-03-22 22:03:32,332 | INFO     | [data] queue_monitor thread has finished
[2026-03-22 23:04:16] 2026-03-22 22:04:10,410 | INFO     | [monitor] cgroup control has ended
[2026-03-22 23:04:16] 2026-03-22 22:04:11,564 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139977825957696)>', '<ExcThread(monitor, started 139977195247360)>']
[2026-03-22 23:04:16] 2026-03-22 22:04:12,556 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-22 23:04:16] 2026-03-22 22:04:12,556 | INFO     | [monitor] control thread has ended
[2026-03-22 23:04:16] 2026-03-22 22:04:16,588 | INFO     | all workflow threads have been joined
[2026-03-22 23:04:16] 2026-03-22 22:04:16,589 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-22 23:04:16] 2026-03-22 22:04:16,589 | INFO     | traces error code: 0
[2026-03-22 23:04:16] 2026-03-22 22:04:16,589 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-22 23:04:16] 2026-03-22 22:04:16,631 [wrapper] ==== pilot stdout END ====
[2026-03-22 23:04:16] 2026-03-22 22:04:16,634 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-22 23:04:16] 2026-03-22 22:04:16,636 [wrapper] pilotpid: 2998131
[2026-03-22 23:04:16] 2026-03-22 22:04:16,638 [wrapper] Pilot exit status: 0
[2026-03-22 23:04:16] 2026-03-22 22:04:16,645 [wrapper] pandaids: 7057011391
[2026-03-22 23:04:16] 2026-03-22 22:04:16,657 [wrapper] cleanup supervisor_pilot 3009564 2998132
[2026-03-22 23:04:16] 2026-03-22 22:04:16,659 [wrapper] Test setup, not cleaning
[2026-03-22 23:04:16] 2026-03-22 22:04:16,662 [wrapper] apfmon messages muted
[2026-03-22 23:04:16] 2026-03-22 22:04:16,664 [wrapper] ==== wrapper stdout END ====
[2026-03-22 23:04:16] 2026-03-22 22:04:16,666 [wrapper] ==== wrapper stderr END ====
[2026-03-22 23:04:16]  *** Error codes and diagnostics ***
[2026-03-22 23:04:16]     "exeErrorCode": 0,
[2026-03-22 23:04:16]     "exeErrorDiag": "",
[2026-03-22 23:04:16]     "pilotErrorCode": 0,
[2026-03-22 23:04:16]     "pilotErrorDiag": "",
[2026-03-22 23:04:16]  *** Listing of results directory ***
[2026-03-22 23:04:16] total 464692
[2026-03-22 23:04:16] -rwx------ 1 boinc boinc     36322 Mar 22 15:16 runpilot2-wrapper.sh
[2026-03-22 23:04:16] -rw-r--r-- 1 boinc boinc    585013 Mar 22 17:44 pilot3.tar.gz
[2026-03-22 23:04:16] -rw-r--r-- 1 boinc boinc      5111 Mar 22 17:46 queuedata.json
[2026-03-22 23:04:16] -rw-r--r-- 1 boinc boinc       100 Mar 22 18:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-22 23:04:16] -rwxr-xr-x 1 boinc boinc      7986 Mar 22 18:28 run_atlas
[2026-03-22 23:04:16] -rw-r--r-- 1 boinc boinc       105 Mar 22 18:28 job.xml
[2026-03-22 23:04:16] -rw-r--r-- 2 boinc boinc 239980706 Mar 22 18:28 EVNT.49133453._000002.pool.root.1
[2026-03-22 23:04:16] drwxrwx--x 2 boinc boinc      4096 Mar 22 18:28 shared
[2026-03-22 23:04:16] -rw-r--r-- 2 boinc boinc    597557 Mar 22 18:28 input.tar.gz
[2026-03-22 23:04:16] -rw-r--r-- 2 boinc boinc     15845 Mar 22 18:28 start_atlas.sh
[2026-03-22 23:04:16] -rw-r--r-- 1 boinc boinc         0 Mar 22 18:28 boinc_setup_complete
[2026-03-22 23:04:16] -rw-r--r-- 1 boinc boinc      6205 Mar 22 18:28 init_data.xml
[2026-03-22 23:04:16] -rw-r--r-- 1 boinc boinc         0 Mar 22 18:28 boinc_lockfile
[2026-03-22 23:04:16] -rw-r--r-- 1 boinc boinc      2634 Mar 22 18:28 pandaJob.out
[2026-03-22 23:04:16] -rw------- 1 boinc boinc   1010671 Mar 22 18:28 agis_schedconf.cvmfs.json
[2026-03-22 23:04:16] -rw------- 1 boinc boinc       419 Mar 22 18:28 workernode_map.json
[2026-03-22 23:04:16] drwx------ 5 boinc boinc      4096 Mar 22 18:28 pilot3
[2026-03-22 23:04:16] -rw------- 1 boinc boinc        95 Mar 22 23:02 pilot_heartbeat.json
[2026-03-22 23:04:16] -rw------- 1 boinc boinc 226489629 Mar 22 23:03 HITS.49180565._000044.pool.root.1
[2026-03-22 23:04:16] -rw-r--r-- 1 boinc boinc       530 Mar 22 23:03 boinc_task_state.xml
[2026-03-22 23:04:16] -rw------- 1 boinc boinc      1028 Mar 22 23:03 memory_monitor_summary.json
[2026-03-22 23:04:16] -rw------- 1 boinc boinc   1511579 Mar 22 23:03 agis_ddmendpoints.agis.ALL.json
[2026-03-22 23:04:16] -rw------- 1 boinc boinc    404839 Mar 22 23:03 log.49180565._000044.job.log.tgz.1
[2026-03-22 23:04:16] -rw------- 1 boinc boinc      6284 Mar 22 23:03 heartbeat.json
[2026-03-22 23:04:16] -rw-r--r-- 1 boinc boinc        28 Mar 22 23:03 wrapper_checkpoint.txt
[2026-03-22 23:04:16] -rw-r--r-- 1 boinc boinc      8192 Mar 22 23:03 boinc_mmap_file
[2026-03-22 23:04:16] -rw------- 1 boinc boinc      4552 Mar 22 23:04 pilotlog.txt
[2026-03-22 23:04:16] -rw------- 1 boinc boinc   2316893 Mar 22 23:04 log.49180565._000044.job.log.1
[2026-03-22 23:04:16] -rw------- 1 boinc boinc       357 Mar 22 23:04 output.list
[2026-03-22 23:04:16] -rw-r--r-- 1 boinc boinc       620 Mar 22 23:04 runtime_log
[2026-03-22 23:04:16] -rw------- 1 boinc boinc   2744320 Mar 22 23:04 result.tar.gz
[2026-03-22 23:04:16] -rw-r--r-- 1 boinc boinc      8897 Mar 22 23:04 runtime_log.err
[2026-03-22 23:04:16] -rw------- 1 boinc boinc       661 Mar 22 23:04 eboNDmGmYO9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmAO4LDmiWR7kn.diag
[2026-03-22 23:04:16] -rw-r--r-- 1 boinc boinc     12153 Mar 22 23:04 stderr.txt
[2026-03-22 23:04:16] HITS file was successfully produced:
[2026-03-22 23:04:16] -rw------- 1 boinc boinc 226489629 Mar 22 23:03 shared/HITS.pool.root.1
[2026-03-22 23:04:16]  *** Contents of shared directory: ***
[2026-03-22 23:04:16] total 458828
[2026-03-22 23:04:16] -rw-r--r-- 2 boinc boinc 239980706 Mar 22 18:28 ATLAS.root_0
[2026-03-22 23:04:16] -rw-r--r-- 2 boinc boinc    597557 Mar 22 18:28 input.tar.gz
[2026-03-22 23:04:16] -rw-r--r-- 2 boinc boinc     15845 Mar 22 18:28 start_atlas.sh
[2026-03-22 23:04:16] -rw------- 1 boinc boinc 226489629 Mar 22 23:03 HITS.pool.root.1
[2026-03-22 23:04:16] -rw------- 1 boinc boinc   2744320 Mar 22 23:04 result.tar.gz
23:04:18 (2993867): run_atlas exited; CPU time 32348.672247
23:04:18 (2993867): called boinc_finish(0)

</stderr_txt>
]]>

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