Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:04:22 (3009723): wrapper (7.7.26015): starting
23:04:22 (3009723): wrapper: running run_atlas (--nthreads 2)
[2026-03-22 23:04:22] Arguments: --nthreads 2
[2026-03-22 23:04:22] Threads: 2
[2026-03-22 23:04:22] Checking for CVMFS
[2026-03-22 23:04:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-22 23:04:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-22 23:04:22] Running cvmfs_config stat atlas.cern.ch
[2026-03-22 23:04:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-22 23:04:22] 2.9.2.0 2994062 275 48740 157590 0 49 31482502 36864001 0 130560 0 58005 99.965 9607 2122 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-22 23:04:22] CVMFS is ok
[2026-03-22 23:04:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-22 23:04:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-22 23:04:22] Further information can be found at the LHC@home message board.
[2026-03-22 23:04:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-22 23:04:22] Checking for apptainer binary...
[2026-03-22 23:04:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-22 23:04:22] Running /usr/bin/apptainer --version
[2026-03-22 23:04:22] apptainer version 1.4.1-1.1
[2026-03-22 23:04:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-22 23:04:22] thA389
[2026-03-22 23:04:22] apptainer works
[2026-03-22 23:04:22] Set ATHENA_PROC_NUMBER=2
[2026-03-22 23:04:22] Set ATHENA_CORE_NUMBER=2
[2026-03-22 23:04:22] Starting ATLAS job with PandaID=7057015630
[2026-03-22 23:04:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-23 02:59:08]  *** The last 200 lines of the pilot log: ***
[2026-03-23 02:59:08] 2026-03-23 01:58:28,022 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-23 02:59:08] 2026-03-23 01:58:28,022 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-23 02:59:08] 2026-03-23 01:58:28,022 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-23 02:59:08] 2026-03-23 01:58:28,022 | INFO     | job 7057015630 has completed (purged errors)
[2026-03-23 02:59:08] 2026-03-23 01:58:28,022 | INFO     | overall cleanup function is called
[2026-03-23 02:59:08] 2026-03-23 01:58:29,029 | INFO     | --- collectZombieJob: --- 10, [3018167]
[2026-03-23 02:59:08] 2026-03-23 01:58:29,029 | INFO     | zombie collector waiting for pid 3018167
[2026-03-23 02:59:08] 2026-03-23 01:58:29,029 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-23 02:59:08] 2026-03-23 01:58:29,029 | INFO     | collected zombie processes
[2026-03-23 02:59:08] 2026-03-23 01:58:29,030 | INFO     | will attempt to kill all subprocesses of pid=3018167
[2026-03-23 02:59:08] 2026-03-23 01:58:29,059 | INFO     | process IDs to be killed: [3018167] (in reverse order)
[2026-03-23 02:59:08] 2026-03-23 01:58:29,079 | WARNING  | found no corresponding commands to process id(s)
[2026-03-23 02:59:08] 2026-03-23 01:58:29,079 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-23 02:59:08] 2026-03-23 01:58:29,080 | INFO     | did not find any defunct processes belonging to 3018167
[2026-03-23 02:59:08] 2026-03-23 01:58:29,080 | INFO     | did not find any defunct processes belonging to 3018167
[2026-03-23 02:59:08] 2026-03-23 01:58:29,080 | INFO     | ready for new job
[2026-03-23 02:59:08] 2026-03-23 01:58:29,081 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-23 02:59:08] 2026-03-23 01:58:29,081 | INFO     | **************************************
[2026-03-23 02:59:08] 2026-03-23 01:58:29,081 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-23 02:59:08] 2026-03-23 01:58:29,081 | INFO     | **************************************
[2026-03-23 02:59:08] 2026-03-23 01:58:29,081 | INFO     | 
[2026-03-23 02:59:08] 2026-03-23 01:58:29,081 | INFO     | architecture information:
[2026-03-23 02:59:08] 2026-03-23 01:58:29,082 | INFO     | executing command: cat /etc/os-release
[2026-03-23 02:59:08] 2026-03-23 01:58:29,091 | INFO     | cat /etc/os-release:
[2026-03-23 02:59:08] NAME="CentOS Linux"
[2026-03-23 02:59:08] VERSION="7 (Core)"
[2026-03-23 02:59:08] ID="centos"
[2026-03-23 02:59:08] ID_LIKE="rhel fedora"
[2026-03-23 02:59:08] VERSION_ID="7"
[2026-03-23 02:59:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-23 02:59:08] ANSI_COLOR="0;31"
[2026-03-23 02:59:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-23 02:59:08] HOME_URL="https://www.centos.org/"
[2026-03-23 02:59:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-23 02:59:08] 
[2026-03-23 02:59:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-23 02:59:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-23 02:59:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-23 02:59:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-23 02:59:08] 
[2026-03-23 02:59:08] 2026-03-23 01:58:29,091 | INFO     | **************************************
[2026-03-23 02:59:08] 2026-03-23 01:58:29,594 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-23 02:59:08] 2026-03-23 01:58:29,606 | INFO     | sufficient remaining disk space (831119163392 B)
[2026-03-23 02:59:08] 2026-03-23 01:58:29,606 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-23 02:59:08] 2026-03-23 01:58:29,606 | INFO     | current server update state: UPDATING_FINAL
[2026-03-23 02:59:08] 2026-03-23 01:58:29,606 | INFO     | update_server=False
[2026-03-23 02:59:08] 2026-03-23 01:58:29,606 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-23 02:59:08] 2026-03-23 01:58:29,727 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-23 02:59:08] 2026-03-23 01:58:29,728 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-23 02:59:08] 2026-03-23 01:58:29,728 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-23 02:59:08] 2026-03-23 01:58:29,728 | INFO     | will abort loop
[2026-03-23 02:59:08] 2026-03-23 01:58:29,840 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-23 02:59:08] 2026-03-23 01:58:29,931 | INFO     | all job control threads have been joined
[2026-03-23 02:59:08] 2026-03-23 01:58:29,986 | INFO     | job.realtimelogging is not enabled
[2026-03-23 02:59:08] 2026-03-23 01:58:30,161 | INFO     | all payload control threads have been joined
[2026-03-23 02:59:08] 2026-03-23 01:58:30,612 | INFO     | [job] retrieve thread has finished
[2026-03-23 02:59:08] 2026-03-23 01:58:30,677 | INFO     | [payload] execute_payloads thread has finished
[2026-03-23 02:59:08] 2026-03-23 01:58:30,682 | INFO     | [job] validate thread has finished
[2026-03-23 02:59:08] 2026-03-23 01:58:30,695 | INFO     | all data control threads have been joined
[2026-03-23 02:59:08] 2026-03-23 01:58:30,734 | INFO     | [job] job monitor thread has finished
[2026-03-23 02:59:08] 2026-03-23 01:58:30,937 | INFO     | [job] control thread has finished
[2026-03-23 02:59:08] 2026-03-23 01:58:30,960 | INFO     | [data] copytool_in thread has finished
[2026-03-23 02:59:08] 2026-03-23 01:58:30,992 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-23 02:59:08] 2026-03-23 01:58:31,044 | INFO     | [payload] validate_pre thread has finished
[2026-03-23 02:59:08] 2026-03-23 01:58:31,108 | INFO     | [payload] validate_post thread has finished
[2026-03-23 02:59:08] 2026-03-23 01:58:31,167 | INFO     | [payload] control thread has finished
[2026-03-23 02:59:08] 2026-03-23 01:58:31,396 | INFO     | [payload] failed_post thread has finished
[2026-03-23 02:59:08] 2026-03-23 01:58:31,701 | INFO     | [data] control thread has finished
[2026-03-23 02:59:08] 2026-03-23 01:58:31,846 | INFO     | [data] copytool_out thread has finished
[2026-03-23 02:59:08] 2026-03-23 01:58:32,075 | INFO     | [job] create_data_payload thread has finished
[2026-03-23 02:59:08] 2026-03-23 01:58:32,217 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-23 02:59:08] 2026-03-23 01:58:32,530 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-23 02:59:08] 2026-03-23 01:58:33,536 | INFO     | [job] queue monitor thread has finished
[2026-03-23 02:59:08] 2026-03-23 01:58:36,221 | INFO     | [data] queue_monitor thread has finished
[2026-03-23 02:59:08] 2026-03-23 01:59:00,388 | INFO     | PID=3013754 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-23 02:59:08] 2026-03-23 01:59:00,389 | INFO     | found 0 job(s) in 20 queues
[2026-03-23 02:59:08] 2026-03-23 01:59:00,389 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-23 02:59:08] 2026-03-23 01:59:00,389 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-23 02:59:08] 2026-03-23 01:59:02,325 | INFO     | [monitor] cgroup control has ended
[2026-03-23 02:59:08] 2026-03-23 01:59:03,553 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140245200013120)>', '<ExcThread(monitor, started 140244565354240)>']
[2026-03-23 02:59:08] 2026-03-23 01:59:04,409 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-23 02:59:08] 2026-03-23 01:59:04,410 | INFO     | [monitor] control thread has ended
[2026-03-23 02:59:08] 2026-03-23 01:59:08,579 | INFO     | all workflow threads have been joined
[2026-03-23 02:59:08] 2026-03-23 01:59:08,580 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-23 02:59:08] 2026-03-23 01:59:08,580 | INFO     | traces error code: 0
[2026-03-23 02:59:08] 2026-03-23 01:59:08,581 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-23 02:59:08] 2026-03-23 01:59:08,623 [wrapper] ==== pilot stdout END ====
[2026-03-23 02:59:08] 2026-03-23 01:59:08,626 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-23 02:59:08] 2026-03-23 01:59:08,628 [wrapper] pilotpid: 3013754
[2026-03-23 02:59:08] 2026-03-23 01:59:08,630 [wrapper] Pilot exit status: 0
[2026-03-23 02:59:08] 2026-03-23 01:59:08,636 [wrapper] pandaids: 7057015630
[2026-03-23 02:59:08] 2026-03-23 01:59:08,648 [wrapper] cleanup supervisor_pilot 3025140 3013755
[2026-03-23 02:59:08] 2026-03-23 01:59:08,650 [wrapper] Test setup, not cleaning
[2026-03-23 02:59:08] 2026-03-23 01:59:08,652 [wrapper] apfmon messages muted
[2026-03-23 02:59:08] 2026-03-23 01:59:08,654 [wrapper] ==== wrapper stdout END ====
[2026-03-23 02:59:08] 2026-03-23 01:59:08,656 [wrapper] ==== wrapper stderr END ====
[2026-03-23 02:59:08]  *** Error codes and diagnostics ***
[2026-03-23 02:59:08]     "exeErrorCode": 0,
[2026-03-23 02:59:08]     "exeErrorDiag": "",
[2026-03-23 02:59:08]     "pilotErrorCode": 0,
[2026-03-23 02:59:08]     "pilotErrorDiag": "",
[2026-03-23 02:59:08]  *** Listing of results directory ***
[2026-03-23 02:59:08] total 418840
[2026-03-23 02:59:08] -rwx------ 1 boinc boinc     36322 Mar 22 15:16 runpilot2-wrapper.sh
[2026-03-23 02:59:08] -rw-r--r-- 1 boinc boinc    585013 Mar 22 17:44 pilot3.tar.gz
[2026-03-23 02:59:08] -rw-r--r-- 1 boinc boinc      5111 Mar 22 17:46 queuedata.json
[2026-03-23 02:59:08] -rw-r--r-- 1 boinc boinc       100 Mar 22 23:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-23 02:59:08] -rwxr-xr-x 1 boinc boinc      7986 Mar 22 23:04 run_atlas
[2026-03-23 02:59:08] -rw-r--r-- 1 boinc boinc       105 Mar 22 23:04 job.xml
[2026-03-23 02:59:08] -rw-r--r-- 2 boinc boinc 220128485 Mar 22 23:04 EVNT.49135185._000007.pool.root.1
[2026-03-23 02:59:08] -rw-r--r-- 2 boinc boinc    597553 Mar 22 23:04 input.tar.gz
[2026-03-23 02:59:08] -rw-r--r-- 2 boinc boinc     15845 Mar 22 23:04 start_atlas.sh
[2026-03-23 02:59:08] drwxrwx--x 2 boinc boinc      4096 Mar 22 23:04 shared
[2026-03-23 02:59:08] -rw-r--r-- 1 boinc boinc         0 Mar 22 23:04 boinc_setup_complete
[2026-03-23 02:59:08] -rw-r--r-- 1 boinc boinc      6205 Mar 22 23:04 init_data.xml
[2026-03-23 02:59:08] -rw-r--r-- 1 boinc boinc         0 Mar 22 23:04 boinc_lockfile
[2026-03-23 02:59:08] -rw-r--r-- 1 boinc boinc      2615 Mar 22 23:04 pandaJob.out
[2026-03-23 02:59:08] -rw------- 1 boinc boinc   1010679 Mar 22 23:04 agis_schedconf.cvmfs.json
[2026-03-23 02:59:08] -rw------- 1 boinc boinc       425 Mar 22 23:04 workernode_map.json
[2026-03-23 02:59:08] drwx------ 5 boinc boinc      4096 Mar 22 23:04 pilot3
[2026-03-23 02:59:08] -rw------- 1 boinc boinc 200141403 Mar 23 02:58 HITS.49176776._000166.pool.root.1
[2026-03-23 02:59:08] -rw-r--r-- 1 boinc boinc       530 Mar 23 02:58 boinc_task_state.xml
[2026-03-23 02:59:08] -rw------- 1 boinc boinc      1019 Mar 23 02:58 memory_monitor_summary.json
[2026-03-23 02:59:08] -rw------- 1 boinc boinc   1511579 Mar 23 02:58 agis_ddmendpoints.agis.ALL.json
[2026-03-23 02:59:08] -rw------- 1 boinc boinc    370115 Mar 23 02:58 log.49176776._000166.job.log.tgz.1
[2026-03-23 02:59:08] -rw------- 1 boinc boinc      6295 Mar 23 02:58 heartbeat.json
[2026-03-23 02:59:08] -rw------- 1 boinc boinc        95 Mar 23 02:59 pilot_heartbeat.json
[2026-03-23 02:59:08] -rw-r--r-- 1 boinc boinc        28 Mar 23 02:59 wrapper_checkpoint.txt
[2026-03-23 02:59:08] -rw-r--r-- 1 boinc boinc      8192 Mar 23 02:59 boinc_mmap_file
[2026-03-23 02:59:08] -rw------- 1 boinc boinc      5006 Mar 23 02:59 pilotlog.txt
[2026-03-23 02:59:08] -rw------- 1 boinc boinc   1981901 Mar 23 02:59 log.49176776._000166.job.log.1
[2026-03-23 02:59:08] -rw------- 1 boinc boinc       357 Mar 23 02:59 output.list
[2026-03-23 02:59:08] -rw-r--r-- 1 boinc boinc       620 Mar 23 02:59 runtime_log
[2026-03-23 02:59:08] -rw------- 1 boinc boinc   2365440 Mar 23 02:59 result.tar.gz
[2026-03-23 02:59:08] -rw-r--r-- 1 boinc boinc      8897 Mar 23 02:59 runtime_log.err
[2026-03-23 02:59:08] -rw------- 1 boinc boinc       660 Mar 23 02:59 cqeNDmGmYO9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm2N4LDmz8KBAo.diag
[2026-03-23 02:59:08] -rw-r--r-- 1 boinc boinc     11426 Mar 23 02:59 stderr.txt
[2026-03-23 02:59:08] HITS file was successfully produced:
[2026-03-23 02:59:08] -rw------- 1 boinc boinc 200141403 Mar 23 02:58 shared/HITS.pool.root.1
[2026-03-23 02:59:08]  *** Contents of shared directory: ***
[2026-03-23 02:59:08] total 413336
[2026-03-23 02:59:08] -rw-r--r-- 2 boinc boinc 220128485 Mar 22 23:04 ATLAS.root_0
[2026-03-23 02:59:08] -rw-r--r-- 2 boinc boinc    597553 Mar 22 23:04 input.tar.gz
[2026-03-23 02:59:08] -rw-r--r-- 2 boinc boinc     15845 Mar 22 23:04 start_atlas.sh
[2026-03-23 02:59:08] -rw------- 1 boinc boinc 200141403 Mar 23 02:58 HITS.pool.root.1
[2026-03-23 02:59:08] -rw------- 1 boinc boinc   2365440 Mar 23 02:59 result.tar.gz
02:59:09 (3009723): run_atlas exited; CPU time 27484.168072
02:59:09 (3009723): called boinc_finish(0)

</stderr_txt>
]]>

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