Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:54:56 (2452606): wrapper (7.7.26015): starting
12:54:56 (2452606): wrapper: running run_atlas (--nthreads 9)
[2026-03-20 12:54:56] Arguments: --nthreads 9
[2026-03-20 12:54:56] Threads: 9
[2026-03-20 12:54:56] Checking for CVMFS
[2026-03-20 12:54:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-20 12:54:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-20 12:54:57] Running cvmfs_config stat atlas.cern.ch
[2026-03-20 12:54:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-20 12:54:57] 2.13.3.0 7219 123949 259352 157508 3 834 37747951 40960000 12849 16776704 0 401026204 99.654 380987478 34763 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-20 12:54:57] CVMFS is ok
[2026-03-20 12:54:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-20 12:54:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-20 12:54:57] Further information can be found at the LHC@home message board.
[2026-03-20 12:54:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-20 12:54:57] Checking for apptainer binary...
[2026-03-20 12:54:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-20 12:54:57] Running /usr/bin/apptainer --version
[2026-03-20 12:54:57] apptainer version 1.4.5-2.el9
[2026-03-20 12:54:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-20 12:54:57] c-212-13.aglt2.org
[2026-03-20 12:54:57] apptainer works
[2026-03-20 12:54:57] Set ATHENA_PROC_NUMBER=9
[2026-03-20 12:54:57] Set ATHENA_CORE_NUMBER=9
[2026-03-20 12:54:57] Starting ATLAS job with PandaID=7051746105
[2026-03-20 12:54:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-20 14:18:28]  *** The last 200 lines of the pilot log: ***
[2026-03-20 14:18:28]  mtime=0
[2026-03-20 14:18:28]  protocol_id=None
[2026-03-20 14:18:28]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-20 14:18:28]  replicas=None
[2026-03-20 14:18:28]  scope=mc23_13p6TeV
[2026-03-20 14:18:28]  status=None
[2026-03-20 14:18:28]  status_code=0
[2026-03-20 14:18:28]  storage_token=
[2026-03-20 14:18:28]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-7051746105/log.48967094._007242.job.log.tgz.1
[2026-03-20 14:18:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/82/72/log.48967094._007242.job.log.tgz.1
[2026-03-20 14:18:28]  workdir=None
[2026-03-20 14:18:28] ]
[2026-03-20 14:18:28] 2026-03-20 18:17:39,928 | INFO     | transferring file log.48967094._007242.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-7051746105/log.48967094._007242.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-03-20 14:18:28] 2026-03-20 18:17:39,928 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-7051746105/log.48967094._007242.job.log.tgz.1 /tmp/boinchome/slots/0/log.48967094._007242.job
[2026-03-20 14:18:28] 2026-03-20 18:17:39,949 | INFO     | adding to output.list: log.48967094._007242.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/82/72/log.48967094._007242.job.log.tg
[2026-03-20 14:18:28] 2026-03-20 18:17:39,950 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-20 14:18:28] 2026-03-20 18:17:39,950 | INFO     | summary of transferred files:
[2026-03-20 14:18:28] 2026-03-20 18:17:39,950 | INFO     |  -- lfn=log.48967094._007242.job.log.tgz.1, status_code=0, status=transferred
[2026-03-20 14:18:28] 2026-03-20 18:17:39,951 | INFO     | stage-out finished correctly
[2026-03-20 14:18:28] 2026-03-20 18:17:41,453 | WARNING  | process 2470399 can no longer be monitored (due to stat problems) - aborting
[2026-03-20 14:18:28] 2026-03-20 18:17:41,453 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7051746105/memory_monitor_summary.json (trf name=prmon)
[2026-03-20 14:18:28] 2026-03-20 18:17:41,607 | INFO     | time since job start (4946s) is within the limit (345600.0s)
[2026-03-20 14:18:28] 2026-03-20 18:17:41,761 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-20 14:18:28] 2026-03-20 18:17:41,895 | INFO     | number of running child processes to parent process 2470399: 1
[2026-03-20 14:18:28] 2026-03-20 18:17:41,895 | INFO     | maximum number of monitored processes: 6
[2026-03-20 14:18:28] 2026-03-20 18:17:43,342 | INFO     | PID=2458318 has CPU usage=13.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-20 14:18:28] 2026-03-20 18:17:43,342 | INFO     | .. there are 20 such processes running
[2026-03-20 14:18:28] 2026-03-20 18:17:44,343 | INFO     | time since job start (4949s) is within the limit (345600.0s)
[2026-03-20 14:18:28] 2026-03-20 18:17:44,400 | INFO     | monitor loop #349: job 0:7051746105 is in state 'finished'
[2026-03-20 14:18:28] 2026-03-20 18:17:44,400 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-20 14:18:28] 2026-03-20 18:17:44,627 | INFO     | job 7051746105 has state=finished
[2026-03-20 14:18:28] 2026-03-20 18:17:44,628 | INFO     | preparing for final server update for job 7051746105 in state='finished'
[2026-03-20 14:18:28] 2026-03-20 18:17:44,628 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-7051746105/jobReport.json
[2026-03-20 14:18:28] 2026-03-20 18:17:44,630 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-03-20 14:18:28] 2026-03-20 18:17:44,631 | INFO     | this job has now completed (state=finished)
[2026-03-20 14:18:28] 2026-03-20 18:17:44,631 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-20 14:18:28] 2026-03-20 18:17:44,631 | INFO     | log transfer has been attempted: DONE
[2026-03-20 14:18:28] 2026-03-20 18:17:44,635 | INFO     | job 7051746105 has finished - writing final server update
[2026-03-20 14:18:28] 2026-03-20 18:17:44,635 | INFO     | total number of processed events: 400 (read)
[2026-03-20 14:18:28] 2026-03-20 18:17:44,654 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7051746105/memory_monitor_summary.json (trf name=prmon)
[2026-03-20 14:18:28] 2026-03-20 18:17:44,655 | INFO     | extracted standard info from prmon json
[2026-03-20 14:18:28] 2026-03-20 18:17:44,655 | INFO     | extracted standard memory fields from prmon json
[2026-03-20 14:18:28] 2026-03-20 18:17:44,655 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-20 14:18:28] 2026-03-20 18:17:44,659 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-20 14:18:28] 2026-03-20 18:17:44,659 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-20 14:18:28] 2026-03-20 18:17:44,661 | INFO     | fitting pss+swap vs Time
[2026-03-20 14:18:28] 2026-03-20 18:17:44,661 | INFO     | sum of square deviations: 125630262.5
[2026-03-20 14:18:28] 2026-03-20 18:17:44,661 | INFO     | sum of deviations: -3699437445.499999
[2026-03-20 14:18:28] 2026-03-20 18:17:44,661 | INFO     | mean x: 1774028274.5
[2026-03-20 14:18:28] 2026-03-20 18:17:44,661 | INFO     | mean y: 2642930.2027027025
[2026-03-20 14:18:28] 2026-03-20 18:17:44,662 | INFO     | intersect: 52242497384.54686
[2026-03-20 14:18:28] 2026-03-20 18:17:44,662 | INFO     | chi2: 0.0966285497668656
[2026-03-20 14:18:28] 2026-03-20 18:17:44,662 | INFO     | current memory leak: -29.45 B/s (using 74 data points, chi2=0.10)
[2026-03-20 14:18:28] 2026-03-20 18:17:44,662 | INFO     | could have reported an average CPU frequency of 3246 MHz (6 samples)
[2026-03-20 14:18:28] 2026-03-20 18:17:44,662 | INFO     | ..............................
[2026-03-20 14:18:28] 2026-03-20 18:17:44,662 | INFO     | . Timing measurements:
[2026-03-20 14:18:28] 2026-03-20 18:17:44,662 | INFO     | . get job = 0 s
[2026-03-20 14:18:28] 2026-03-20 18:17:44,662 | INFO     | . initial setup = 7 s
[2026-03-20 14:18:28] 2026-03-20 18:17:44,662 | INFO     | . payload setup = 11 s
[2026-03-20 14:18:28] 2026-03-20 18:17:44,662 | INFO     | . stage-in = 0 s
[2026-03-20 14:18:28] 2026-03-20 18:17:44,663 | INFO     | . payload execution = 4917 s
[2026-03-20 14:18:28] 2026-03-20 18:17:44,663 | INFO     | . stage-out = 0 s
[2026-03-20 14:18:28] 2026-03-20 18:17:44,663 | INFO     | . log creation = 0 s
[2026-03-20 14:18:28] 2026-03-20 18:17:44,663 | INFO     | ..............................
[2026-03-20 14:18:28] 2026-03-20 18:17:45,026 | INFO     | 
[2026-03-20 14:18:28] 2026-03-20 18:17:45,026 | INFO     | job summary report
[2026-03-20 14:18:28] 2026-03-20 18:17:45,026 | INFO     | --------------------------------------------------
[2026-03-20 14:18:28] 2026-03-20 18:17:45,026 | INFO     | PanDA job id: 7051746105
[2026-03-20 14:18:28] 2026-03-20 18:17:45,027 | INFO     | task id: 48967094
[2026-03-20 14:18:28] 2026-03-20 18:17:45,027 | INFO     | errors: (none)
[2026-03-20 14:18:28] 2026-03-20 18:17:45,027 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-20 14:18:28] 2026-03-20 18:17:45,027 | INFO     | pilot state: finished 
[2026-03-20 14:18:28] 2026-03-20 18:17:45,027 | INFO     | transexitcode: 0
[2026-03-20 14:18:28] 2026-03-20 18:17:45,027 | INFO     | exeerrorcode: 0
[2026-03-20 14:18:28] 2026-03-20 18:17:45,027 | INFO     | exeerrordiag: 
[2026-03-20 14:18:28] 2026-03-20 18:17:45,027 | INFO     | exitcode: 0
[2026-03-20 14:18:28] 2026-03-20 18:17:45,027 | INFO     | exitmsg: OK
[2026-03-20 14:18:28] 2026-03-20 18:17:45,027 | INFO     | cpuconsumptiontime: 38042 s
[2026-03-20 14:18:28] 2026-03-20 18:17:45,027 | INFO     | nevents: 400
[2026-03-20 14:18:28] 2026-03-20 18:17:45,027 | INFO     | neventsw: 0
[2026-03-20 14:18:28] 2026-03-20 18:17:45,027 | INFO     | pid: 2470399
[2026-03-20 14:18:28] 2026-03-20 18:17:45,027 | INFO     | pgrp: 2470399
[2026-03-20 14:18:28] 2026-03-20 18:17:45,027 | INFO     | corecount: 9
[2026-03-20 14:18:28] 2026-03-20 18:17:45,027 | INFO     | event service: False
[2026-03-20 14:18:28] 2026-03-20 18:17:45,028 | INFO     | sizes: {0: 2280224, 11: 2280224, 4932: 2306535, 4933: 2315533, 4935: 2315589, 4938: 2315783}
[2026-03-20 14:18:28] 2026-03-20 18:17:45,028 | INFO     | --------------------------------------------------
[2026-03-20 14:18:28] 2026-03-20 18:17:45,028 | INFO     | 
[2026-03-20 14:18:28] 2026-03-20 18:17:45,028 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-20 14:18:28] 2026-03-20 18:17:45,045 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-20 14:18:28] 2026-03-20 18:17:45,046 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-20 14:18:28] 2026-03-20 18:17:45,046 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-20 14:18:28] 2026-03-20 18:17:45,046 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-20 14:18:28] 2026-03-20 18:17:45,046 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-20 14:18:28] 2026-03-20 18:17:45,046 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-20 14:18:28] 2026-03-20 18:17:45,046 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-20 14:18:28] 2026-03-20 18:17:45,046 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-20 14:18:28] 2026-03-20 18:17:45,046 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-20 14:18:28] 2026-03-20 18:17:45,046 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-20 14:18:28] 2026-03-20 18:17:45,046 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-20 14:18:28] 2026-03-20 18:17:45,046 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-20 14:18:28] 2026-03-20 18:17:45,046 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-20 14:18:28] 2026-03-20 18:17:45,046 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-20 14:18:28] 2026-03-20 18:17:45,046 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-20 14:18:28] 2026-03-20 18:17:45,046 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-20 14:18:28] 2026-03-20 18:17:45,046 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-20 14:18:28] 2026-03-20 18:17:45,046 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-20 14:18:28] 2026-03-20 18:17:45,046 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-20 14:18:28] 2026-03-20 18:17:45,046 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-20 14:18:28] 2026-03-20 18:17:45,047 | INFO     | job 7051746105 has completed (purged errors)
[2026-03-20 14:18:28] 2026-03-20 18:17:45,047 | INFO     | overall cleanup function is called
[2026-03-20 14:18:28] 2026-03-20 18:17:46,055 | INFO     | --- collectZombieJob: --- 10, [2470399]
[2026-03-20 14:18:28] 2026-03-20 18:17:46,055 | INFO     | zombie collector waiting for pid 2470399
[2026-03-20 14:18:28] 2026-03-20 18:17:46,056 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-20 14:18:28] 2026-03-20 18:17:46,056 | INFO     | collected zombie processes
[2026-03-20 14:18:28] 2026-03-20 18:17:46,056 | INFO     | will attempt to kill all subprocesses of pid=2470399
[2026-03-20 14:18:28] 2026-03-20 18:17:46,488 | INFO     | process IDs to be killed: [2470399] (in reverse order)
[2026-03-20 14:18:28] 2026-03-20 18:17:46,660 | WARNING  | found no corresponding commands to process id(s)
[2026-03-20 14:18:28] 2026-03-20 18:17:46,660 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-20 14:18:28] 2026-03-20 18:17:46,678 | INFO     | did not find any defunct processes belonging to 2470399
[2026-03-20 14:18:28] 2026-03-20 18:17:46,694 | INFO     | did not find any defunct processes belonging to 2470399
[2026-03-20 14:18:28] 2026-03-20 18:17:46,694 | INFO     | ready for new job
[2026-03-20 14:18:28] 2026-03-20 18:17:46,694 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-20 14:18:28] 2026-03-20 18:17:46,696 | INFO     | **************************************
[2026-03-20 14:18:28] 2026-03-20 18:17:46,697 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-20 14:18:28] 2026-03-20 18:17:46,697 | INFO     | **************************************
[2026-03-20 14:18:28] 2026-03-20 18:17:46,697 | INFO     | 
[2026-03-20 14:18:28] 2026-03-20 18:17:46,702 | INFO     | architecture information:
[2026-03-20 14:18:28] 2026-03-20 18:17:46,702 | INFO     | executing command: cat /etc/os-release
[2026-03-20 14:18:28] 2026-03-20 18:17:46,717 | INFO     | cat /etc/os-release:
[2026-03-20 14:18:28] NAME="CentOS Linux"
[2026-03-20 14:18:28] VERSION="7 (Core)"
[2026-03-20 14:18:28] ID="centos"
[2026-03-20 14:18:28] ID_LIKE="rhel fedora"
[2026-03-20 14:18:28] VERSION_ID="7"
[2026-03-20 14:18:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-20 14:18:28] ANSI_COLOR="0;31"
[2026-03-20 14:18:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-20 14:18:28] HOME_URL="https://www.centos.org/"
[2026-03-20 14:18:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-20 14:18:28] 
[2026-03-20 14:18:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-20 14:18:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-20 14:18:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-20 14:18:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-20 14:18:28] 
[2026-03-20 14:18:28] 2026-03-20 18:17:46,717 | INFO     | **************************************
[2026-03-20 14:18:28] 2026-03-20 18:17:47,221 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-20 14:18:28] 2026-03-20 18:17:47,241 | INFO     | sufficient remaining disk space (129773862912 B)
[2026-03-20 14:18:28] 2026-03-20 18:17:47,241 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-20 14:18:28] 2026-03-20 18:17:47,241 | INFO     | current server update state: UPDATING_FINAL
[2026-03-20 14:18:28] 2026-03-20 18:17:47,242 | INFO     | update_server=False
[2026-03-20 14:18:28] 2026-03-20 18:17:47,242 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-20 14:18:28] 2026-03-20 18:17:47,853 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-20 14:18:28] 2026-03-20 18:17:47,910 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-20 14:18:28] 2026-03-20 18:17:47,910 | INFO     | aborting loop
[2026-03-20 14:18:28] 2026-03-20 18:17:48,020 | INFO     | all data control threads have been joined
[2026-03-20 14:18:28] 2026-03-20 18:17:48,049 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-20 14:18:28] 2026-03-20 18:17:48,181 | INFO     | all job control threads have been joined
[2026-03-20 14:18:28] 2026-03-20 18:17:48,247 | INFO     | [payload] failed_post thread has finished
[2026-03-20 14:18:28] 2026-03-20 18:17:48,248 | INFO     | [job] retrieve thread has finished
[2026-03-20 14:18:28] 2026-03-20 18:17:48,284 | INFO     | [payload] validate_post thread has finished
[2026-03-20 14:18:28] 2026-03-20 18:17:48,452 | INFO     | all payload control threads have been joined
[2026-03-20 14:18:28] 2026-03-20 18:17:48,798 | INFO     | [job] validate thread has finished
[2026-03-20 14:18:28] 2026-03-20 18:17:48,917 | INFO     | [job] job monitor thread has finished
[2026-03-20 14:18:28] 2026-03-20 18:17:49,027 | INFO     | [data] control thread has finished
[2026-03-20 14:18:28] 2026-03-20 18:17:49,043 | INFO     | [payload] execute_payloads thread has finished
[2026-03-20 14:18:28] 2026-03-20 18:17:49,186 | INFO     | [job] create_data_payload thread has finished
[2026-03-20 14:18:28] 2026-03-20 18:17:49,187 | INFO     | [job] control thread has finished
[2026-03-20 14:18:28] 2026-03-20 18:17:49,462 | INFO     | [payload] control thread has finished
[2026-03-20 14:18:28] 2026-03-20 18:17:49,463 | INFO     | [payload] validate_pre thread has finished
[2026-03-20 14:18:28] 2026-03-20 18:17:49,566 | INFO     | [data] copytool_in thread has finished
[2026-03-20 14:18:28] 2026-03-20 18:17:49,788 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-20 14:18:28] 2026-03-20 18:17:50,055 | INFO     | [data] copytool_out thread has finished
[2026-03-20 14:18:28] 2026-03-20 18:17:50,794 | INFO     | [job] queue monitor thread has finished
[2026-03-20 14:18:28] 2026-03-20 18:17:51,862 | INFO     | [data] queue_monitor thread has finished
[2026-03-20 14:18:28] 2026-03-20 18:17:57,437 | INFO     | job.realtimelogging is not enabled
[2026-03-20 14:18:28] 2026-03-20 18:17:58,443 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-20 14:18:28] 2026-03-20 18:18:17,882 | INFO     | PID=2458318 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-20 14:18:28] 2026-03-20 18:18:17,882 | INFO     | .. there are 20 such processes running
[2026-03-20 14:18:28] 2026-03-20 18:18:17,882 | INFO     | found 0 job(s) in 20 queues
[2026-03-20 14:18:28] 2026-03-20 18:18:17,883 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-20 14:18:28] 2026-03-20 18:18:17,883 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-20 14:18:28] 2026-03-20 18:18:23,188 | INFO     | [monitor] cgroup control has ended
[2026-03-20 14:18:28] 2026-03-20 18:18:23,327 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140550514628416)>', '<ExcThread(monitor, started 140550153942784)>']
[2026-03-20 14:18:28] 2026-03-20 18:18:23,916 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-20 14:18:28] 2026-03-20 18:18:23,916 | INFO     | [monitor] control thread has ended
[2026-03-20 14:18:28] 2026-03-20 18:18:28,353 | INFO     | all workflow threads have been joined
[2026-03-20 14:18:28] 2026-03-20 18:18:28,354 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-20 14:18:28] 2026-03-20 18:18:28,354 | INFO     | traces error code: 0
[2026-03-20 14:18:28] 2026-03-20 18:18:28,355 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-20 14:18:28] 2026-03-20 18:18:28,607 [wrapper] ==== pilot stdout END ====
[2026-03-20 14:18:28] 2026-03-20 18:18:28,611 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-20 14:18:28] 2026-03-20 18:18:28,615 [wrapper] pilotpid: 2458318
[2026-03-20 14:18:28] 2026-03-20 18:18:28,618 [wrapper] Pilot exit status: 0
[2026-03-20 14:18:28] 2026-03-20 18:18:28,630 [wrapper] pandaids: 7051746105
[2026-03-20 14:18:28] 2026-03-20 18:18:28,728 [wrapper] cleanup supervisor_pilot 2812615 2458319
[2026-03-20 14:18:28] 2026-03-20 18:18:28,732 [wrapper] Test setup, not cleaning
[2026-03-20 14:18:28] 2026-03-20 18:18:28,736 [wrapper] apfmon messages muted
[2026-03-20 14:18:28] 2026-03-20 18:18:28,739 [wrapper] ==== wrapper stdout END ====
[2026-03-20 14:18:28] 2026-03-20 18:18:28,742 [wrapper] ==== wrapper stderr END ====
[2026-03-20 14:18:28]  *** Error codes and diagnostics ***
[2026-03-20 14:18:28]     "exeErrorCode": 0,
[2026-03-20 14:18:28]     "exeErrorDiag": "",
[2026-03-20 14:18:28]     "pilotErrorCode": 0,
[2026-03-20 14:18:28]     "pilotErrorDiag": "",
[2026-03-20 14:18:28]  *** Listing of results directory ***
[2026-03-20 14:18:28] total 423808
[2026-03-20 14:18:28] -rw-r--r--. 1 boincer umatlas    585013 Mar 12 08:11 pilot3.tar.gz
[2026-03-20 14:18:28] -rwx------. 1 boincer umatlas     36322 Mar 12 08:13 runpilot2-wrapper.sh
[2026-03-20 14:18:28] -rw-r--r--. 1 boincer umatlas      5111 Mar 12 08:15 queuedata.json
[2026-03-20 14:18:28] -rw-r--r--. 1 boincer umatlas       100 Mar 20 12:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-20 14:18:28] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 20 12:54 run_atlas
[2026-03-20 14:18:28] -rw-r--r--. 1 boincer umatlas       105 Mar 20 12:54 job.xml
[2026-03-20 14:18:28] -rw-r--r--. 2 boincer umatlas 218228006 Mar 20 12:54 EVNT.48967092._000296.pool.root.1
[2026-03-20 14:18:28] -rw-r--r--. 2 boincer umatlas     15845 Mar 20 12:54 start_atlas.sh
[2026-03-20 14:18:28] drwxrwx--x. 2 boincer umatlas      4096 Mar 20 12:54 shared
[2026-03-20 14:18:28] -rw-r--r--. 2 boincer umatlas    597525 Mar 20 12:54 input.tar.gz
[2026-03-20 14:18:28] -rw-r--r--. 1 boincer umatlas         0 Mar 20 12:54 boinc_lockfile
[2026-03-20 14:18:28] -rw-r--r--. 1 boincer umatlas      2597 Mar 20 12:54 pandaJob.out
[2026-03-20 14:18:28] -rw-------. 1 boincer umatlas        57 Mar 20 12:54 setup.sh.local
[2026-03-20 14:18:28] -rw-------. 1 boincer umatlas   1010639 Mar 20 12:55 agis_schedconf.cvmfs.json
[2026-03-20 14:18:28] -rw-------. 1 boincer umatlas   1511579 Mar 20 12:55 agis_ddmendpoints.agis.ALL.json
[2026-03-20 14:18:28] -rw-------. 1 boincer umatlas       429 Mar 20 12:55 workernode_map.json
[2026-03-20 14:18:28] drwx------. 5 boincer umatlas      4096 Mar 20 12:55 pilot3
[2026-03-20 14:18:28] -rw-r--r--. 1 boincer umatlas      6959 Mar 20 14:11 init_data.xml
[2026-03-20 14:18:28] -rw-------. 1 boincer umatlas 209697613 Mar 20 14:17 HITS.48967094._007242.pool.root.1
[2026-03-20 14:18:28] -rw-r--r--. 1 boincer umatlas       529 Mar 20 14:17 boinc_task_state.xml
[2026-03-20 14:18:28] -rw-------. 1 boincer umatlas      1034 Mar 20 14:17 memory_monitor_summary.json
[2026-03-20 14:18:28] -rw-------. 1 boincer umatlas    343898 Mar 20 14:17 log.48967094._007242.job.log.tgz.1
[2026-03-20 14:18:28] -rw-------. 1 boincer umatlas        95 Mar 20 14:17 pilot_heartbeat.json
[2026-03-20 14:18:28] -rw-------. 1 boincer umatlas      6329 Mar 20 14:17 heartbeat.json
[2026-03-20 14:18:28] -rw-r--r--. 1 boincer umatlas      8192 Mar 20 14:18 boinc_mmap_file
[2026-03-20 14:18:28] -rw-r--r--. 1 boincer umatlas        27 Mar 20 14:18 wrapper_checkpoint.txt
[2026-03-20 14:18:28] -rw-------. 1 boincer umatlas      4893 Mar 20 14:18 pilotlog.txt
[2026-03-20 14:18:28] -rw-------. 1 boincer umatlas    712116 Mar 20 14:18 log.48967094._007242.job.log.1
[2026-03-20 14:18:28] -rw-------. 1 boincer umatlas       357 Mar 20 14:18 output.list
[2026-03-20 14:18:28] -rw-r--r--. 1 boincer umatlas       620 Mar 20 14:18 runtime_log
[2026-03-20 14:18:28] -rw-------. 1 boincer umatlas   1075200 Mar 20 14:18 result.tar.gz
[2026-03-20 14:18:28] -rw-------. 1 boincer umatlas       653 Mar 20 14:18 uo5LDmR6tK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmfomLDmQzl3nm.diag
[2026-03-20 14:18:28] -rw-r--r--. 1 boincer umatlas      9341 Mar 20 14:18 runtime_log.err
[2026-03-20 14:18:28] -rw-r--r--. 1 boincer umatlas     21801 Mar 20 14:18 stderr.txt
[2026-03-20 14:18:28] HITS file was successfully produced:
[2026-03-20 14:18:28] -rw-------. 1 boincer umatlas 209697613 Mar 20 14:17 shared/HITS.pool.root.1
[2026-03-20 14:18:28]  *** Contents of shared directory: ***
[2026-03-20 14:18:28] total 419556
[2026-03-20 14:18:28] -rw-r--r--. 2 boincer umatlas 218228006 Mar 20 12:54 ATLAS.root_0
[2026-03-20 14:18:28] -rw-r--r--. 2 boincer umatlas     15845 Mar 20 12:54 start_atlas.sh
[2026-03-20 14:18:28] -rw-r--r--. 2 boincer umatlas    597525 Mar 20 12:54 input.tar.gz
[2026-03-20 14:18:28] -rw-------. 1 boincer umatlas 209697613 Mar 20 14:17 HITS.pool.root.1
[2026-03-20 14:18:28] -rw-------. 1 boincer umatlas   1075200 Mar 20 14:18 result.tar.gz
14:18:30 (2452606): run_atlas exited; CPU time 38178.835128
14:18:30 (2452606): called boinc_finish(0)

</stderr_txt>
]]>

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