Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:28:46 (537234): wrapper (7.7.26015): starting
07:28:46 (537234): wrapper: running run_atlas (--nthreads 8)
[2026-03-20 07:28:46] Arguments: --nthreads 8
[2026-03-20 07:28:46] Threads: 8
[2026-03-20 07:28:46] Checking for CVMFS
[2026-03-20 07:28:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-20 07:28:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-20 07:28:47] Running cvmfs_config stat atlas.cern.ch
[2026-03-20 07:28:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-20 07:28:49] 2.13.3.0 14337 194098 462460 157500 1 67 23673803 40960001 32588 16776704 0 741792200 99.629 755245198 36648 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-20 07:28:49] CVMFS is ok
[2026-03-20 07:28:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-20 07:28:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-20 07:28:49] Further information can be found at the LHC@home message board.
[2026-03-20 07:28:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-20 07:28:49] Checking for apptainer binary...
[2026-03-20 07:28:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-20 07:28:49] Running /usr/bin/apptainer --version
[2026-03-20 07:28:49] apptainer version 1.4.5-2.el9
[2026-03-20 07:28:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-20 07:28:50] c7-10-12.aglt2.org
[2026-03-20 07:28:50] apptainer works
[2026-03-20 07:28:50] Set ATHENA_PROC_NUMBER=8
[2026-03-20 07:28:50] Set ATHENA_CORE_NUMBER=8
[2026-03-20 07:28:50] Starting ATLAS job with PandaID=7051401543
[2026-03-20 07:28:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-20 11:10:29]  *** The last 200 lines of the pilot log: ***
[2026-03-20 11:10:30] 2026-03-20 15:09:47,376 | INFO     | job 7051401543 has state=finished
[2026-03-20 11:10:30] 2026-03-20 15:09:47,376 | INFO     | preparing for final server update for job 7051401543 in state='finished'
[2026-03-20 11:10:30] 2026-03-20 15:09:47,377 | INFO     | reading metadata from: /tmp/boinchome/slots/2/PanDA_Pilot-7051401543/jobReport.json
[2026-03-20 11:10:30] 2026-03-20 15:09:47,378 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/2/workernode_map.json
[2026-03-20 11:10:30] 2026-03-20 15:09:47,379 | INFO     | this job has now completed (state=finished)
[2026-03-20 11:10:30] 2026-03-20 15:09:47,379 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-20 11:10:30] 2026-03-20 15:09:47,379 | INFO     | log transfer has been attempted: DONE
[2026-03-20 11:10:30] 2026-03-20 15:09:47,379 | INFO     | job 7051401543 has finished - writing final server update
[2026-03-20 11:10:30] 2026-03-20 15:09:47,379 | INFO     | total number of processed events: 400 (read)
[2026-03-20 11:10:30] 2026-03-20 15:09:47,653 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-7051401543/memory_monitor_summary.json (trf name=prmon)
[2026-03-20 11:10:30] 2026-03-20 15:09:47,653 | INFO     | extracted standard info from prmon json
[2026-03-20 11:10:30] 2026-03-20 15:09:47,653 | INFO     | extracted standard memory fields from prmon json
[2026-03-20 11:10:30] 2026-03-20 15:09:47,653 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-20 11:10:30] 2026-03-20 15:09:47,654 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-20 11:10:30] 2026-03-20 15:09:47,654 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-20 11:10:30] 2026-03-20 15:09:47,688 | INFO     | fitting pss+swap vs Time
[2026-03-20 11:10:30] 2026-03-20 15:09:47,688 | INFO     | sum of square deviations: 3038916888.4859767
[2026-03-20 11:10:30] 2026-03-20 15:09:47,689 | INFO     | sum of deviations: -20786417016.89719
[2026-03-20 11:10:30] 2026-03-20 15:09:47,689 | INFO     | mean x: 1774012859.0841122
[2026-03-20 11:10:30] 2026-03-20 15:09:47,689 | INFO     | mean y: 2533664.38317757
[2026-03-20 11:10:30] 2026-03-20 15:09:47,689 | INFO     | intersect: 12136913259.289494
[2026-03-20 11:10:30] 2026-03-20 15:09:47,690 | INFO     | chi2: 3.333039049808558
[2026-03-20 11:10:30] 2026-03-20 15:09:47,690 | INFO     | sum of square deviations: 2830859764.612434
[2026-03-20 11:10:30] 2026-03-20 15:09:47,691 | INFO     | sum of deviations: -6730494149.564591
[2026-03-20 11:10:30] 2026-03-20 15:09:47,723 | INFO     | mean x: 1774012706.5885167
[2026-03-20 11:10:30] 2026-03-20 15:09:47,723 | INFO     | mean y: 2543781.5980861243
[2026-03-20 11:10:30] 2026-03-20 15:09:47,724 | INFO     | intersect: 4220337362.2638288
[2026-03-20 11:10:30] 2026-03-20 15:09:47,724 | INFO     | chi2: 2.674239227811586
[2026-03-20 11:10:30] 2026-03-20 15:09:47,724 | INFO     | current chi2=2.674239227811586 (change=19.76573967937195 %)
[2026-03-20 11:10:30] 2026-03-20 15:09:47,724 | INFO     | right removable region: 208
[2026-03-20 11:10:30] 2026-03-20 15:09:47,724 | INFO     | sum of square deviations: 2830809744.239238
[2026-03-20 11:10:30] 2026-03-20 15:09:47,725 | INFO     | sum of deviations: -67428642244.11481
[2026-03-20 11:10:30] 2026-03-20 15:09:47,725 | INFO     | mean x: 1774013011.598086
[2026-03-20 11:10:30] 2026-03-20 15:09:47,725 | INFO     | mean y: 2567588.71291866
[2026-03-20 11:10:30] 2026-03-20 15:09:47,725 | INFO     | intersect: 42258776766.62748
[2026-03-20 11:10:30] 2026-03-20 15:09:47,726 | INFO     | chi2: 1.0466725992073038
[2026-03-20 11:10:30] 2026-03-20 15:09:47,726 | INFO     | current chi2=1.0466725992073038 (change=68.59704961250237 %)
[2026-03-20 11:10:30] 2026-03-20 15:09:47,726 | INFO     | sum of square deviations: 2632436217.627438
[2026-03-20 11:10:30] 2026-03-20 15:09:47,727 | INFO     | sum of deviations: -62491933708.882355
[2026-03-20 11:10:30] 2026-03-20 15:09:47,751 | INFO     | mean x: 1774013164.1078432
[2026-03-20 11:10:30] 2026-03-20 15:09:47,751 | INFO     | mean y: 2563743.1764705884
[2026-03-20 11:10:30] 2026-03-20 15:09:47,751 | INFO     | intersect: 42116219644.03215
[2026-03-20 11:10:30] 2026-03-20 15:09:47,752 | INFO     | chi2: 1.0279827592751585
[2026-03-20 11:10:30] 2026-03-20 15:09:47,752 | INFO     | current chi2=1.0279827592751585 (change=1.7856433756171772 %)
[2026-03-20 11:10:30] 2026-03-20 15:09:47,752 | INFO     | left removable region: 20
[2026-03-20 11:10:30] 2026-03-20 15:09:47,752 | INFO     | sum of square deviations: 2060333439.4255416
[2026-03-20 11:10:30] 2026-03-20 15:09:47,753 | INFO     | sum of deviations: -28094106774.30852
[2026-03-20 11:10:30] 2026-03-20 15:09:47,753 | INFO     | mean x: 1774013286.1170213
[2026-03-20 11:10:30] 2026-03-20 15:09:47,753 | INFO     | mean y: 2557905.8776595746
[2026-03-20 11:10:30] 2026-03-20 15:09:47,753 | INFO     | intersect: 24192486451.186146
[2026-03-20 11:10:30] 2026-03-20 15:09:47,754 | INFO     | chi2: 0.260452431166863
[2026-03-20 11:10:30] 2026-03-20 15:09:47,754 | INFO     | current memory leak: -13.64 B/s (using 188 data points, chi2=0.26)
[2026-03-20 11:10:30] 2026-03-20 15:09:47,754 | INFO     | could have reported an average CPU frequency of 3265 MHz (11 samples)
[2026-03-20 11:10:30] 2026-03-20 15:09:47,754 | INFO     | ..............................
[2026-03-20 11:10:30] 2026-03-20 15:09:47,754 | INFO     | . Timing measurements:
[2026-03-20 11:10:30] 2026-03-20 15:09:47,755 | INFO     | . get job = 1 s
[2026-03-20 11:10:30] 2026-03-20 15:09:47,755 | INFO     | . initial setup = 32 s
[2026-03-20 11:10:30] 2026-03-20 15:09:47,755 | INFO     | . payload setup = 80 s
[2026-03-20 11:10:30] 2026-03-20 15:09:47,755 | INFO     | . stage-in = 0 s
[2026-03-20 11:10:30] 2026-03-20 15:09:47,755 | INFO     | . payload execution = 13034 s
[2026-03-20 11:10:30] 2026-03-20 15:09:47,755 | INFO     | . stage-out = 4 s
[2026-03-20 11:10:30] 2026-03-20 15:09:47,755 | INFO     | . log creation = 0 s
[2026-03-20 11:10:30] 2026-03-20 15:09:47,755 | INFO     | ..............................
[2026-03-20 11:10:30] 2026-03-20 15:09:48,746 | INFO     | 
[2026-03-20 11:10:30] 2026-03-20 15:09:48,746 | INFO     | job summary report
[2026-03-20 11:10:30] 2026-03-20 15:09:48,746 | INFO     | --------------------------------------------------
[2026-03-20 11:10:30] 2026-03-20 15:09:48,747 | INFO     | PanDA job id: 7051401543
[2026-03-20 11:10:30] 2026-03-20 15:09:48,747 | INFO     | task id: 48967085
[2026-03-20 11:10:30] 2026-03-20 15:09:48,747 | INFO     | errors: (none)
[2026-03-20 11:10:30] 2026-03-20 15:09:48,747 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-20 11:10:30] 2026-03-20 15:09:48,747 | INFO     | pilot state: finished 
[2026-03-20 11:10:30] 2026-03-20 15:09:48,747 | INFO     | transexitcode: 0
[2026-03-20 11:10:30] 2026-03-20 15:09:48,747 | INFO     | exeerrorcode: 0
[2026-03-20 11:10:30] 2026-03-20 15:09:48,747 | INFO     | exeerrordiag: 
[2026-03-20 11:10:30] 2026-03-20 15:09:48,747 | INFO     | exitcode: 0
[2026-03-20 11:10:30] 2026-03-20 15:09:48,747 | INFO     | exitmsg: OK
[2026-03-20 11:10:30] 2026-03-20 15:09:48,747 | INFO     | cpuconsumptiontime: 39061 s
[2026-03-20 11:10:30] 2026-03-20 15:09:48,747 | INFO     | nevents: 400
[2026-03-20 11:10:30] 2026-03-20 15:09:48,747 | INFO     | neventsw: 0
[2026-03-20 11:10:30] 2026-03-20 15:09:48,747 | INFO     | pid: 551784
[2026-03-20 11:10:30] 2026-03-20 15:09:48,748 | INFO     | pgrp: 551784
[2026-03-20 11:10:30] 2026-03-20 15:09:48,748 | INFO     | corecount: 8
[2026-03-20 11:10:30] 2026-03-20 15:09:48,748 | INFO     | event service: False
[2026-03-20 11:10:30] 2026-03-20 15:09:48,748 | INFO     | sizes: {0: 2279152, 1: 2279753, 2: 2279837, 3: 2245613, 4: 2280354, 14: 2280354, 13120: 2310525, 13125: 2319523, 13128: 2319579, 13132: 2319773}
[2026-03-20 11:10:30] 2026-03-20 15:09:48,748 | INFO     | --------------------------------------------------
[2026-03-20 11:10:30] 2026-03-20 15:09:48,748 | INFO     | 
[2026-03-20 11:10:30] 2026-03-20 15:09:48,748 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-03-20 11:10:30] 2026-03-20 15:09:48,931 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-20 11:10:30] 2026-03-20 15:09:48,932 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-20 11:10:30] 2026-03-20 15:09:48,932 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-20 11:10:30] 2026-03-20 15:09:48,932 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-20 11:10:30] 2026-03-20 15:09:48,932 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-20 11:10:30] 2026-03-20 15:09:48,932 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-20 11:10:30] 2026-03-20 15:09:48,932 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-20 11:10:30] 2026-03-20 15:09:48,932 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-20 11:10:30] 2026-03-20 15:09:48,932 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-20 11:10:30] 2026-03-20 15:09:48,932 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-20 11:10:30] 2026-03-20 15:09:48,932 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-20 11:10:30] 2026-03-20 15:09:48,932 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-20 11:10:30] 2026-03-20 15:09:48,932 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-20 11:10:30] 2026-03-20 15:09:48,932 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-20 11:10:30] 2026-03-20 15:09:48,932 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-20 11:10:30] 2026-03-20 15:09:48,933 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-20 11:10:30] 2026-03-20 15:09:48,933 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-20 11:10:30] 2026-03-20 15:09:48,933 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-20 11:10:30] 2026-03-20 15:09:48,933 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-20 11:10:30] 2026-03-20 15:09:48,933 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-20 11:10:30] 2026-03-20 15:09:48,933 | INFO     | job 7051401543 has completed (purged errors)
[2026-03-20 11:10:30] 2026-03-20 15:09:48,933 | INFO     | overall cleanup function is called
[2026-03-20 11:10:30] 2026-03-20 15:09:49,943 | INFO     | --- collectZombieJob: --- 10, [551784]
[2026-03-20 11:10:30] 2026-03-20 15:09:49,943 | INFO     | zombie collector waiting for pid 551784
[2026-03-20 11:10:30] 2026-03-20 15:09:49,943 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-20 11:10:30] 2026-03-20 15:09:49,944 | INFO     | collected zombie processes
[2026-03-20 11:10:30] 2026-03-20 15:09:49,944 | INFO     | will attempt to kill all subprocesses of pid=551784
[2026-03-20 11:10:30] 2026-03-20 15:09:50,160 | INFO     | PID=542209 has CPU usage=10.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-20 11:10:30] 2026-03-20 15:09:50,161 | INFO     | .. there are 52 such processes running
[2026-03-20 11:10:30] 2026-03-20 15:09:52,831 | INFO     | process IDs to be killed: [551784] (in reverse order)
[2026-03-20 11:10:30] 2026-03-20 15:09:53,541 | WARNING  | found no corresponding commands to process id(s)
[2026-03-20 11:10:30] 2026-03-20 15:09:53,545 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-20 11:10:30] 2026-03-20 15:09:53,604 | INFO     | did not find any defunct processes belonging to 551784
[2026-03-20 11:10:30] 2026-03-20 15:09:53,652 | INFO     | did not find any defunct processes belonging to 551784
[2026-03-20 11:10:30] 2026-03-20 15:09:53,653 | INFO     | ready for new job
[2026-03-20 11:10:30] 2026-03-20 15:09:53,653 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-20 11:10:30] 2026-03-20 15:09:53,664 | INFO     | **************************************
[2026-03-20 11:10:30] 2026-03-20 15:09:53,664 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-20 11:10:30] 2026-03-20 15:09:53,664 | INFO     | **************************************
[2026-03-20 11:10:30] 2026-03-20 15:09:53,664 | INFO     | 
[2026-03-20 11:10:30] 2026-03-20 15:09:53,680 | INFO     | architecture information:
[2026-03-20 11:10:30] 2026-03-20 15:09:53,682 | INFO     | executing command: cat /etc/os-release
[2026-03-20 11:10:30] 2026-03-20 15:09:53,825 | INFO     | cat /etc/os-release:
[2026-03-20 11:10:30] NAME="CentOS Linux"
[2026-03-20 11:10:30] VERSION="7 (Core)"
[2026-03-20 11:10:30] ID="centos"
[2026-03-20 11:10:30] ID_LIKE="rhel fedora"
[2026-03-20 11:10:30] VERSION_ID="7"
[2026-03-20 11:10:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-20 11:10:30] ANSI_COLOR="0;31"
[2026-03-20 11:10:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-20 11:10:30] HOME_URL="https://www.centos.org/"
[2026-03-20 11:10:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-20 11:10:30] 
[2026-03-20 11:10:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-20 11:10:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-20 11:10:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-20 11:10:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-20 11:10:30] 
[2026-03-20 11:10:30] 2026-03-20 15:09:53,829 | INFO     | **************************************
[2026-03-20 11:10:30] 2026-03-20 15:09:54,335 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-03-20 11:10:30] 2026-03-20 15:09:54,403 | INFO     | sufficient remaining disk space (84612743168 B)
[2026-03-20 11:10:30] 2026-03-20 15:09:54,404 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-20 11:10:30] 2026-03-20 15:09:54,404 | INFO     | current server update state: UPDATING_FINAL
[2026-03-20 11:10:30] 2026-03-20 15:09:54,404 | INFO     | update_server=False
[2026-03-20 11:10:30] 2026-03-20 15:09:54,404 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-20 11:10:30] 2026-03-20 15:09:54,405 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-20 11:10:30] 2026-03-20 15:09:54,542 | INFO     | all data control threads have been joined
[2026-03-20 11:10:30] 2026-03-20 15:09:54,630 | INFO     | all job control threads have been joined
[2026-03-20 11:10:30] 2026-03-20 15:09:55,220 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-20 11:10:30] 2026-03-20 15:09:55,220 | INFO     | aborting loop
[2026-03-20 11:10:30] 2026-03-20 15:09:55,362 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-20 11:10:30] 2026-03-20 15:09:55,410 | INFO     | [job] retrieve thread has finished
[2026-03-20 11:10:30] 2026-03-20 15:09:55,411 | INFO     | [job] queue monitor thread has finished
[2026-03-20 11:10:30] 2026-03-20 15:09:55,480 | INFO     | [job] create_data_payload thread has finished
[2026-03-20 11:10:30] 2026-03-20 15:09:55,486 | INFO     | all payload control threads have been joined
[2026-03-20 11:10:30] 2026-03-20 15:09:55,533 | INFO     | [data] copytool_in thread has finished
[2026-03-20 11:10:30] 2026-03-20 15:09:55,549 | INFO     | [data] control thread has finished
[2026-03-20 11:10:30] 2026-03-20 15:09:55,636 | INFO     | [job] control thread has finished
[2026-03-20 11:10:30] 2026-03-20 15:09:55,861 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-20 11:10:30] 2026-03-20 15:09:55,880 | INFO     | [payload] failed_post thread has finished
[2026-03-20 11:10:30] 2026-03-20 15:09:55,915 | INFO     | [payload] validate_pre thread has finished
[2026-03-20 11:10:30] 2026-03-20 15:09:55,949 | INFO     | [payload] execute_payloads thread has finished
[2026-03-20 11:10:30] 2026-03-20 15:09:55,998 | INFO     | [payload] validate_post thread has finished
[2026-03-20 11:10:30] 2026-03-20 15:09:56,230 | INFO     | [job] job monitor thread has finished
[2026-03-20 11:10:30] 2026-03-20 15:09:56,524 | INFO     | [payload] control thread has finished
[2026-03-20 11:10:30] 2026-03-20 15:09:56,883 | INFO     | [job] validate thread has finished
[2026-03-20 11:10:30] 2026-03-20 15:09:56,889 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-20 11:10:30] 2026-03-20 15:09:57,368 | INFO     | [data] copytool_out thread has finished
[2026-03-20 11:10:30] 2026-03-20 15:09:59,871 | INFO     | [data] queue_monitor thread has finished
[2026-03-20 11:10:30] 2026-03-20 15:10:04,826 | INFO     | [monitor] cgroup control has ended
[2026-03-20 11:10:30] 2026-03-20 15:10:05,740 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140640483178304)>', '<ExcThread(monitor, started 140639912064768)>']
[2026-03-20 11:10:30] 2026-03-20 15:10:10,766 | INFO     | all workflow threads have been joined
[2026-03-20 11:10:30] 2026-03-20 15:10:10,767 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-20 11:10:30] 2026-03-20 15:10:10,767 | INFO     | traces error code: 0
[2026-03-20 11:10:30] 2026-03-20 15:10:10,767 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-20 11:10:30] 2026-03-20 15:10:27,396 | INFO     | PID=542209 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-20 11:10:30] 2026-03-20 15:10:27,396 | INFO     | .. there are 52 such processes running
[2026-03-20 11:10:30] 2026-03-20 15:10:27,397 | INFO     | found 0 job(s) in 20 queues
[2026-03-20 11:10:30] 2026-03-20 15:10:27,397 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-20 11:10:30] 2026-03-20 15:10:27,397 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-20 11:10:30] 2026-03-20 15:10:27,397 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-20 11:10:30] 2026-03-20 15:10:27,397 | INFO     | [monitor] control thread has ended
[2026-03-20 11:10:30] 2026-03-20 15:10:27,643 [wrapper] ==== pilot stdout END ====
[2026-03-20 11:10:30] 2026-03-20 15:10:27,673 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-20 11:10:30] 2026-03-20 15:10:27,688 [wrapper] pilotpid: 542209
[2026-03-20 11:10:30] 2026-03-20 15:10:27,728 [wrapper] Pilot exit status: 0
[2026-03-20 11:10:30] 2026-03-20 15:10:27,855 [wrapper] pandaids: 7051401543
[2026-03-20 11:10:30] 2026-03-20 15:10:28,836 [wrapper] cleanup supervisor_pilot 1230524 542210
[2026-03-20 11:10:30] 2026-03-20 15:10:28,994 [wrapper] Test setup, not cleaning
[2026-03-20 11:10:30] 2026-03-20 15:10:29,019 [wrapper] apfmon messages muted
[2026-03-20 11:10:30] 2026-03-20 15:10:29,052 [wrapper] ==== wrapper stdout END ====
[2026-03-20 11:10:30] 2026-03-20 15:10:29,139 [wrapper] ==== wrapper stderr END ====
[2026-03-20 11:10:30]  *** Error codes and diagnostics ***
[2026-03-20 11:10:30]     "exeErrorCode": 0,
[2026-03-20 11:10:30]     "exeErrorDiag": "",
[2026-03-20 11:10:30]     "pilotErrorCode": 0,
[2026-03-20 11:10:30]     "pilotErrorDiag": "",
[2026-03-20 11:10:30]  *** Listing of results directory ***
[2026-03-20 11:10:30] total 413976
[2026-03-20 11:10:30] -rw-r--r--. 1 boincer umatlas      5111 Mar 12 01:40 queuedata.json
[2026-03-20 11:10:30] -rw-r--r--. 1 boincer umatlas    585013 Mar 12 01:40 pilot3.tar.gz
[2026-03-20 11:10:30] -rwx------. 1 boincer umatlas     36322 Mar 12 01:41 runpilot2-wrapper.sh
[2026-03-20 11:10:30] -rw-r--r--. 1 boincer umatlas       100 Mar 20 07:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-20 11:10:30] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 20 07:28 run_atlas
[2026-03-20 11:10:30] -rw-r--r--. 1 boincer umatlas       105 Mar 20 07:28 job.xml
[2026-03-20 11:10:30] -rw-r--r--. 2 boincer umatlas 213073243 Mar 20 07:28 EVNT.48967083._000573.pool.root.1
[2026-03-20 11:10:30] -rw-r--r--. 2 boincer umatlas    597524 Mar 20 07:28 input.tar.gz
[2026-03-20 11:10:30] -rw-r--r--. 2 boincer umatlas     15845 Mar 20 07:28 start_atlas.sh
[2026-03-20 11:10:30] drwxrwx--x. 2 boincer umatlas      4096 Mar 20 07:28 shared
[2026-03-20 11:10:30] -rw-r--r--. 1 boincer umatlas         0 Mar 20 07:28 boinc_lockfile
[2026-03-20 11:10:30] -rw-r--r--. 1 boincer umatlas      2563 Mar 20 07:28 pandaJob.out
[2026-03-20 11:10:30] -rw-------. 1 boincer umatlas        57 Mar 20 07:28 setup.sh.local
[2026-03-20 11:10:30] -rw-------. 1 boincer umatlas   1008684 Mar 20 07:30 agis_schedconf.cvmfs.json
[2026-03-20 11:10:30] -rw-------. 1 boincer umatlas       425 Mar 20 07:30 workernode_map.json
[2026-03-20 11:10:30] drwx------. 5 boincer umatlas      4096 Mar 20 07:30 pilot3
[2026-03-20 11:10:30] -rw-r--r--. 1 boincer umatlas      6902 Mar 20 11:04 init_data.xml
[2026-03-20 11:10:30] -rw-------. 1 boincer umatlas 202883402 Mar 20 11:08 HITS.48967085._014572.pool.root.1
[2026-03-20 11:10:30] -rw-r--r--. 1 boincer umatlas       530 Mar 20 11:08 boinc_task_state.xml
[2026-03-20 11:10:30] -rw-------. 1 boincer umatlas      1033 Mar 20 11:09 memory_monitor_summary.json
[2026-03-20 11:10:30] -rw-------. 1 boincer umatlas   1511579 Mar 20 11:09 agis_ddmendpoints.agis.ALL.json
[2026-03-20 11:10:30] -rw-------. 1 boincer umatlas    440458 Mar 20 11:09 log.48967085._014572.job.log.tgz.1
[2026-03-20 11:10:30] -rw-------. 1 boincer umatlas      6329 Mar 20 11:09 heartbeat.json
[2026-03-20 11:10:30] -rw-------. 1 boincer umatlas        95 Mar 20 11:10 pilot_heartbeat.json
[2026-03-20 11:10:30] -rw-------. 1 boincer umatlas       822 Mar 20 11:10 pilotlog.txt
[2026-03-20 11:10:30] -rw-r--r--. 1 boincer umatlas      8192 Mar 20 11:10 boinc_mmap_file
[2026-03-20 11:10:30] -rw-------. 1 boincer umatlas   1567792 Mar 20 11:10 log.48967085._014572.job.log.1
[2026-03-20 11:10:30] -rw-r--r--. 1 boincer umatlas        28 Mar 20 11:10 wrapper_checkpoint.txt
[2026-03-20 11:10:30] -rw-------. 1 boincer umatlas       357 Mar 20 11:10 output.list
[2026-03-20 11:10:30] -rw-r--r--. 1 boincer umatlas       620 Mar 20 11:10 runtime_log
[2026-03-20 11:10:30] -rw-------. 1 boincer umatlas   2027520 Mar 20 11:10 result.tar.gz
[2026-03-20 11:10:30] -rw-------. 1 boincer umatlas       657 Mar 20 11:10 WjzKDmWynK9n9Rq4apOajLDm4fhM0noT9bVooX4SDmoPjLDmVbwTzm.diag
[2026-03-20 11:10:30] -rw-r--r--. 1 boincer umatlas      9342 Mar 20 11:10 runtime_log.err
[2026-03-20 11:10:30] -rw-r--r--. 1 boincer umatlas     21436 Mar 20 11:10 stderr.txt
[2026-03-20 11:10:30] HITS file was successfully produced:
[2026-03-20 11:10:30] -rw-------. 1 boincer umatlas 202883402 Mar 20 11:08 shared/HITS.pool.root.1
[2026-03-20 11:10:30]  *** Contents of shared directory: ***
[2026-03-20 11:10:30] total 408796
[2026-03-20 11:10:30] -rw-r--r--. 2 boincer umatlas 213073243 Mar 20 07:28 ATLAS.root_0
[2026-03-20 11:10:30] -rw-r--r--. 2 boincer umatlas    597524 Mar 20 07:28 input.tar.gz
[2026-03-20 11:10:30] -rw-r--r--. 2 boincer umatlas     15845 Mar 20 07:28 start_atlas.sh
[2026-03-20 11:10:30] -rw-------. 1 boincer umatlas 202883402 Mar 20 11:08 HITS.pool.root.1
[2026-03-20 11:10:30] -rw-------. 1 boincer umatlas   2027520 Mar 20 11:10 result.tar.gz
11:10:31 (537234): run_atlas exited; CPU time 39339.834249
11:10:31 (537234): called boinc_finish(0)

</stderr_txt>
]]>

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