Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:19:20 (1425607): wrapper (7.7.26015): starting
05:19:20 (1425607): wrapper: running run_atlas (--nthreads 9)
[2026-03-20 05:19:20] Arguments: --nthreads 9
[2026-03-20 05:19:20] Threads: 9
[2026-03-20 05:19:20] Checking for CVMFS
[2026-03-20 05:19:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-20 05:19:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-20 05:19:22] Running cvmfs_config stat atlas.cern.ch
[2026-03-20 05:19:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-20 05:19:23] 2.13.3.0 12161 194021 385192 157492 2 493 26453968 40960001 15394 16776704 0 517701196 99.577 595393943 37024 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-20 05:19:23] CVMFS is ok
[2026-03-20 05:19:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-20 05:19:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-20 05:19:23] Further information can be found at the LHC@home message board.
[2026-03-20 05:19:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-20 05:19:23] Checking for apptainer binary...
[2026-03-20 05:19:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-20 05:19:23] Running /usr/bin/apptainer --version
[2026-03-20 05:19:23] apptainer version 1.4.5-2.el9
[2026-03-20 05:19:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-20 05:19:24] c6-5-7-1.aglt2.org
[2026-03-20 05:19:24] apptainer works
[2026-03-20 05:19:24] Set ATHENA_PROC_NUMBER=9
[2026-03-20 05:19:24] Set ATHENA_CORE_NUMBER=9
[2026-03-20 05:19:24] Starting ATLAS job with PandaID=7057373993
[2026-03-20 05:19:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:20:09 (1425607): BOINC client no longer exists - exiting
09:20:09 (1425607): timer handler: client dead, exiting
09:30:07 (2098502): wrapper (7.7.26015): starting
09:30:07 (2098502): wrapper: running run_atlas (--nthreads 9)
[2026-03-20 09:30:07] Arguments: --nthreads 9
[2026-03-20 09:30:07] Threads: 9
[2026-03-20 09:30:07] This job has been restarted, cleaning up previous attempt
[2026-03-20 09:30:07] Checking for CVMFS
[2026-03-20 09:30:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-20 09:30:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-20 09:30:09] Running cvmfs_config stat atlas.cern.ch
[2026-03-20 09:30:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-20 09:30:10] 2.13.3.0 12161 194272 375044 157503 0 220 28172157 40960000 17249 16776704 0 518481501 99.577 595902059 37026 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-20 09:30:10] CVMFS is ok
[2026-03-20 09:30:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-20 09:30:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-20 09:30:10] Further information can be found at the LHC@home message board.
[2026-03-20 09:30:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-20 09:30:10] Checking for apptainer binary...
[2026-03-20 09:30:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-20 09:30:10] Running /usr/bin/apptainer --version
[2026-03-20 09:30:10] apptainer version 1.4.5-2.el9
[2026-03-20 09:30:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-20 09:30:11] c6-5-7-1.aglt2.org
[2026-03-20 09:30:11] apptainer works
[2026-03-20 09:30:12] Set ATHENA_PROC_NUMBER=9
[2026-03-20 09:30:12] Set ATHENA_CORE_NUMBER=9
[2026-03-20 09:30:12] Starting ATLAS job with PandaID=7057373993
[2026-03-20 09:30:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-20 17:45:33]  *** The last 200 lines of the pilot log: ***
[2026-03-20 17:45:33] 2026-03-20 21:44:56,611 | INFO     | job 7057373993 has state=finished
[2026-03-20 17:45:33] 2026-03-20 21:44:56,611 | INFO     | preparing for final server update for job 7057373993 in state='finished'
[2026-03-20 17:45:33] 2026-03-20 21:44:56,612 | INFO     | reading metadata from: /tmp/boinchome/slots/1/PanDA_Pilot-7057373993/jobReport.json
[2026-03-20 17:45:33] 2026-03-20 21:44:56,624 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/1/workernode_map.json
[2026-03-20 17:45:33] 2026-03-20 21:44:56,625 | INFO     | this job has now completed (state=finished)
[2026-03-20 17:45:33] 2026-03-20 21:44:56,625 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-20 17:45:33] 2026-03-20 21:44:56,625 | INFO     | log transfer has been attempted: DONE
[2026-03-20 17:45:33] 2026-03-20 21:44:56,659 | INFO     | job 7057373993 has finished - writing final server update
[2026-03-20 17:45:33] 2026-03-20 21:44:56,696 | INFO     | total number of processed events: 400 (read)
[2026-03-20 17:45:33] 2026-03-20 21:44:56,738 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-7057373993/memory_monitor_summary.json (trf name=prmon)
[2026-03-20 17:45:33] 2026-03-20 21:44:56,739 | INFO     | extracted standard info from prmon json
[2026-03-20 17:45:33] 2026-03-20 21:44:56,739 | INFO     | extracted standard memory fields from prmon json
[2026-03-20 17:45:33] 2026-03-20 21:44:56,739 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-20 17:45:33] 2026-03-20 21:44:56,743 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-20 17:45:33] 2026-03-20 21:44:56,743 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-20 17:45:33] 2026-03-20 21:44:56,760 | INFO     | fitting pss+swap vs Time
[2026-03-20 17:45:33] 2026-03-20 21:44:56,769 | INFO     | sum of square deviations: 35155693002.65072
[2026-03-20 17:45:33] 2026-03-20 21:44:56,784 | INFO     | sum of deviations: 113452045899.81827
[2026-03-20 17:45:33] 2026-03-20 21:44:56,784 | INFO     | mean x: 1774028320.9731405
[2026-03-20 17:45:33] 2026-03-20 21:44:56,785 | INFO     | mean y: 2571573.909090909
[2026-03-20 17:45:33] 2026-03-20 21:44:56,785 | INFO     | intersect: -5722451183.669514
[2026-03-20 17:45:33] 2026-03-20 21:44:56,785 | INFO     | chi2: 3.7021253678181427
[2026-03-20 17:45:33] 2026-03-20 21:44:56,792 | INFO     | sum of square deviations: 34077398441.519886
[2026-03-20 17:45:33] 2026-03-20 21:44:56,807 | INFO     | sum of deviations: 143842995300.91443
[2026-03-20 17:45:33] 2026-03-20 21:44:56,807 | INFO     | mean x: 1774028168.4780793
[2026-03-20 17:45:33] 2026-03-20 21:44:56,807 | INFO     | mean y: 2575834.51565762
[2026-03-20 17:45:33] 2026-03-20 21:44:56,807 | INFO     | intersect: -7485716616.564445
[2026-03-20 17:45:33] 2026-03-20 21:44:56,808 | INFO     | chi2: 3.0144065900713732
[2026-03-20 17:45:33] 2026-03-20 21:44:56,808 | INFO     | current chi2=3.0144065900713732 (change=18.576323312143217 %)
[2026-03-20 17:45:33] 2026-03-20 21:44:56,808 | INFO     | right removable region: 478
[2026-03-20 17:45:33] 2026-03-20 21:44:56,809 | INFO     | sum of square deviations: 34077258751.519867
[2026-03-20 17:45:33] 2026-03-20 21:44:56,835 | INFO     | sum of deviations: -16623043133.697273
[2026-03-20 17:45:33] 2026-03-20 21:44:56,836 | INFO     | mean x: 1774028473.4780793
[2026-03-20 17:45:33] 2026-03-20 21:44:56,836 | INFO     | mean y: 2589928.9812108558
[2026-03-20 17:45:33] 2026-03-20 21:44:56,836 | INFO     | intersect: 867969155.9332021
[2026-03-20 17:45:33] 2026-03-20 21:44:56,837 | INFO     | chi2: 0.9643911009720972
[2026-03-20 17:45:33] 2026-03-20 21:44:56,837 | INFO     | current chi2=0.9643911009720972 (change=73.95033919284954 %)
[2026-03-20 17:45:33] 2026-03-20 21:44:56,837 | INFO     | sum of square deviations: 33021103987.86492
[2026-03-20 17:45:33] 2026-03-20 21:44:56,855 | INFO     | sum of deviations: -47793554412.894485
[2026-03-20 17:45:33] 2026-03-20 21:44:56,855 | INFO     | mean x: 1774028625.9831223
[2026-03-20 17:45:33] 2026-03-20 21:44:56,865 | INFO     | mean y: 2594420.388185654
[2026-03-20 17:45:33] 2026-03-20 21:44:56,865 | INFO     | intersect: 2570259441.433987
[2026-03-20 17:45:33] 2026-03-20 21:44:56,866 | INFO     | chi2: 0.8052515225345086
[2026-03-20 17:45:33] 2026-03-20 21:44:56,866 | INFO     | current chi2=0.8052515225345086 (change=16.501560236005645 %)
[2026-03-20 17:45:33] 2026-03-20 21:44:56,866 | INFO     | left removable region: 20
[2026-03-20 17:45:33] 2026-03-20 21:44:56,867 | INFO     | sum of square deviations: 29788785414.892925
[2026-03-20 17:45:33] 2026-03-20 21:44:56,880 | INFO     | sum of deviations: -10158430808.203054
[2026-03-20 17:45:33] 2026-03-20 21:44:56,880 | INFO     | mean x: 1774028747.9847162
[2026-03-20 17:45:33] 2026-03-20 21:44:56,880 | INFO     | mean y: 2598056.3995633186
[2026-03-20 17:45:33] 2026-03-20 21:44:56,880 | INFO     | intersect: 607568955.2518557
[2026-03-20 17:45:33] 2026-03-20 21:44:56,881 | INFO     | chi2: 0.0867410657269193
[2026-03-20 17:45:33] 2026-03-20 21:44:56,881 | INFO     | current memory leak: -0.34 B/s (using 458 data points, chi2=0.09)
[2026-03-20 17:45:33] 2026-03-20 21:44:56,882 | INFO     | could have reported an average CPU frequency of 2810 MHz (20 samples)
[2026-03-20 17:45:33] 2026-03-20 21:44:56,882 | INFO     | ..............................
[2026-03-20 17:45:33] 2026-03-20 21:44:56,883 | INFO     | . Timing measurements:
[2026-03-20 17:45:33] 2026-03-20 21:44:56,883 | INFO     | . get job = 0 s
[2026-03-20 17:45:33] 2026-03-20 21:44:56,883 | INFO     | . initial setup = 5 s
[2026-03-20 17:45:33] 2026-03-20 21:44:56,883 | INFO     | . payload setup = 69 s
[2026-03-20 17:45:33] 2026-03-20 21:44:56,883 | INFO     | . stage-in = 0 s
[2026-03-20 17:45:33] 2026-03-20 21:44:56,892 | INFO     | . payload execution = 29526 s
[2026-03-20 17:45:33] 2026-03-20 21:44:56,892 | INFO     | . stage-out = 5 s
[2026-03-20 17:45:33] 2026-03-20 21:44:56,892 | INFO     | . log creation = 0 s
[2026-03-20 17:45:33] 2026-03-20 21:44:56,892 | INFO     | ..............................
[2026-03-20 17:45:33] 2026-03-20 21:44:57,660 | INFO     | time since job start (29615s) is within the limit (345600.0s)
[2026-03-20 17:45:33] 2026-03-20 21:44:57,667 | INFO     | 
[2026-03-20 17:45:33] 2026-03-20 21:44:57,667 | INFO     | job summary report
[2026-03-20 17:45:33] 2026-03-20 21:44:57,667 | INFO     | --------------------------------------------------
[2026-03-20 17:45:33] 2026-03-20 21:44:57,667 | INFO     | PanDA job id: 7057373993
[2026-03-20 17:45:33] 2026-03-20 21:44:57,668 | INFO     | task id: 49176475
[2026-03-20 17:45:33] 2026-03-20 21:44:57,668 | INFO     | errors: (none)
[2026-03-20 17:45:33] 2026-03-20 21:44:57,668 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-20 17:45:33] 2026-03-20 21:44:57,668 | INFO     | pilot state: finished 
[2026-03-20 17:45:33] 2026-03-20 21:44:57,668 | INFO     | transexitcode: 0
[2026-03-20 17:45:33] 2026-03-20 21:44:57,668 | INFO     | exeerrorcode: 0
[2026-03-20 17:45:33] 2026-03-20 21:44:57,668 | INFO     | exeerrordiag: 
[2026-03-20 17:45:33] 2026-03-20 21:44:57,668 | INFO     | exitcode: 0
[2026-03-20 17:45:33] 2026-03-20 21:44:57,668 | INFO     | exitmsg: OK
[2026-03-20 17:45:33] 2026-03-20 21:44:57,668 | INFO     | cpuconsumptiontime: 80696 s
[2026-03-20 17:45:33] 2026-03-20 21:44:57,668 | INFO     | nevents: 400
[2026-03-20 17:45:33] 2026-03-20 21:44:57,668 | INFO     | neventsw: 0
[2026-03-20 17:45:33] 2026-03-20 21:44:57,668 | INFO     | pid: 2123576
[2026-03-20 17:45:33] 2026-03-20 21:44:57,668 | INFO     | pgrp: 2123576
[2026-03-20 17:45:33] 2026-03-20 21:44:57,669 | INFO     | corecount: 9
[2026-03-20 17:45:33] 2026-03-20 21:44:57,669 | INFO     | event service: False
[2026-03-20 17:45:33] 2026-03-20 21:44:57,669 | INFO     | sizes: {0: 2279819, 1: 2279875, 2: 2280364, 29600: 2318194, 29601: 2318193, 29607: 2327247, 29610: 2327459, 29612: 2327653}
[2026-03-20 17:45:33] 2026-03-20 21:44:57,669 | INFO     | --------------------------------------------------
[2026-03-20 17:45:33] 2026-03-20 21:44:57,669 | INFO     | 
[2026-03-20 17:45:33] 2026-03-20 21:44:57,669 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-03-20 17:45:33] 2026-03-20 21:44:57,723 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-20 17:45:33] 2026-03-20 21:44:57,724 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-20 17:45:33] 2026-03-20 21:44:57,724 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-20 17:45:33] 2026-03-20 21:44:57,724 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-20 17:45:33] 2026-03-20 21:44:57,724 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-20 17:45:33] 2026-03-20 21:44:57,724 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-20 17:45:33] 2026-03-20 21:44:57,724 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-20 17:45:33] 2026-03-20 21:44:57,724 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-20 17:45:33] 2026-03-20 21:44:57,724 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-20 17:45:33] 2026-03-20 21:44:57,724 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-20 17:45:33] 2026-03-20 21:44:57,725 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-20 17:45:33] 2026-03-20 21:44:57,725 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-20 17:45:33] 2026-03-20 21:44:57,725 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-20 17:45:33] 2026-03-20 21:44:57,725 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-20 17:45:33] 2026-03-20 21:44:57,725 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-20 17:45:33] 2026-03-20 21:44:57,725 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-20 17:45:33] 2026-03-20 21:44:57,725 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-20 17:45:33] 2026-03-20 21:44:57,725 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-20 17:45:33] 2026-03-20 21:44:57,725 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-20 17:45:33] 2026-03-20 21:44:57,725 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-20 17:45:33] 2026-03-20 21:44:57,725 | INFO     | job 7057373993 has completed (purged errors)
[2026-03-20 17:45:33] 2026-03-20 21:44:57,726 | INFO     | overall cleanup function is called
[2026-03-20 17:45:33] 2026-03-20 21:44:58,764 | INFO     | --- collectZombieJob: --- 10, [2123576]
[2026-03-20 17:45:33] 2026-03-20 21:44:58,764 | INFO     | zombie collector waiting for pid 2123576
[2026-03-20 17:45:33] 2026-03-20 21:44:58,765 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-20 17:45:33] 2026-03-20 21:44:58,765 | INFO     | collected zombie processes
[2026-03-20 17:45:33] 2026-03-20 21:44:58,765 | INFO     | will attempt to kill all subprocesses of pid=2123576
[2026-03-20 17:45:33] 2026-03-20 21:44:59,286 | INFO     | process IDs to be killed: [2123576] (in reverse order)
[2026-03-20 17:45:33] 2026-03-20 21:44:59,790 | WARNING  | found no corresponding commands to process id(s)
[2026-03-20 17:45:33] 2026-03-20 21:44:59,790 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-20 17:45:33] 2026-03-20 21:44:59,805 | INFO     | did not find any defunct processes belonging to 2123576
[2026-03-20 17:45:33] 2026-03-20 21:44:59,830 | INFO     | did not find any defunct processes belonging to 2123576
[2026-03-20 17:45:33] 2026-03-20 21:44:59,830 | INFO     | ready for new job
[2026-03-20 17:45:33] 2026-03-20 21:44:59,831 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-20 17:45:33] 2026-03-20 21:44:59,834 | INFO     | **************************************
[2026-03-20 17:45:33] 2026-03-20 21:44:59,834 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-20 17:45:33] 2026-03-20 21:44:59,835 | INFO     | **************************************
[2026-03-20 17:45:33] 2026-03-20 21:44:59,835 | INFO     | 
[2026-03-20 17:45:33] 2026-03-20 21:44:59,883 | INFO     | architecture information:
[2026-03-20 17:45:33] 2026-03-20 21:44:59,889 | INFO     | executing command: cat /etc/os-release
[2026-03-20 17:45:33] 2026-03-20 21:45:00,017 | INFO     | cat /etc/os-release:
[2026-03-20 17:45:33] NAME="CentOS Linux"
[2026-03-20 17:45:33] VERSION="7 (Core)"
[2026-03-20 17:45:33] ID="centos"
[2026-03-20 17:45:33] ID_LIKE="rhel fedora"
[2026-03-20 17:45:33] VERSION_ID="7"
[2026-03-20 17:45:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-20 17:45:33] ANSI_COLOR="0;31"
[2026-03-20 17:45:33] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-20 17:45:33] HOME_URL="https://www.centos.org/"
[2026-03-20 17:45:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-20 17:45:33] 
[2026-03-20 17:45:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-20 17:45:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-20 17:45:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-20 17:45:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-20 17:45:33] 
[2026-03-20 17:45:33] 2026-03-20 21:45:00,018 | INFO     | **************************************
[2026-03-20 17:45:33] 2026-03-20 21:45:00,524 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-03-20 17:45:33] 2026-03-20 21:45:00,633 | INFO     | sufficient remaining disk space (74703699968 B)
[2026-03-20 17:45:33] 2026-03-20 21:45:00,634 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-20 17:45:33] 2026-03-20 21:45:00,634 | INFO     | current server update state: UPDATING_FINAL
[2026-03-20 17:45:33] 2026-03-20 21:45:00,634 | INFO     | update_server=False
[2026-03-20 17:45:33] 2026-03-20 21:45:00,634 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-20 17:45:33] 2026-03-20 21:45:00,634 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-20 17:45:33] 2026-03-20 21:45:00,853 | INFO     | all payload control threads have been joined
[2026-03-20 17:45:33] 2026-03-20 21:45:01,307 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-20 17:45:33] 2026-03-20 21:45:01,370 | INFO     | all data control threads have been joined
[2026-03-20 17:45:33] 2026-03-20 21:45:01,570 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-20 17:45:33] 2026-03-20 21:45:01,570 | INFO     | aborting loop
[2026-03-20 17:45:33] 2026-03-20 21:45:01,640 | INFO     | [job] retrieve thread has finished
[2026-03-20 17:45:33] 2026-03-20 21:45:01,859 | INFO     | [payload] control thread has finished
[2026-03-20 17:45:33] 2026-03-20 21:45:01,909 | INFO     | all job control threads have been joined
[2026-03-20 17:45:33] 2026-03-20 21:45:02,050 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-20 17:45:33] 2026-03-20 21:45:02,158 | INFO     | [job] create_data_payload thread has finished
[2026-03-20 17:45:33] 2026-03-20 21:45:02,195 | INFO     | [payload] failed_post thread has finished
[2026-03-20 17:45:33] 2026-03-20 21:45:02,196 | INFO     | [payload] validate_post thread has finished
[2026-03-20 17:45:33] 2026-03-20 21:45:02,219 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-20 17:45:33] 2026-03-20 21:45:02,234 | INFO     | [payload] execute_payloads thread has finished
[2026-03-20 17:45:33] 2026-03-20 21:45:02,240 | INFO     | [payload] validate_pre thread has finished
[2026-03-20 17:45:33] 2026-03-20 21:45:02,379 | INFO     | [data] control thread has finished
[2026-03-20 17:45:33] 2026-03-20 21:45:02,580 | INFO     | [job] job monitor thread has finished
[2026-03-20 17:45:33] 2026-03-20 21:45:02,642 | INFO     | [data] copytool_out thread has finished
[2026-03-20 17:45:33] 2026-03-20 21:45:02,706 | INFO     | [data] copytool_in thread has finished
[2026-03-20 17:45:33] 2026-03-20 21:45:02,710 | INFO     | [job] validate thread has finished
[2026-03-20 17:45:33] 2026-03-20 21:45:02,915 | INFO     | [job] control thread has finished
[2026-03-20 17:45:33] 2026-03-20 21:45:03,225 | INFO     | [job] queue monitor thread has finished
[2026-03-20 17:45:33] 2026-03-20 21:45:05,316 | INFO     | [data] queue_monitor thread has finished
[2026-03-20 17:45:33] 2026-03-20 21:45:15,327 | INFO     | [monitor] cgroup control has ended
[2026-03-20 17:45:33] 2026-03-20 21:45:16,831 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140127064680256)>', '<ExcThread(monitor, started 140126587971328)>']
[2026-03-20 17:45:33] 2026-03-20 21:45:21,857 | INFO     | all workflow threads have been joined
[2026-03-20 17:45:33] 2026-03-20 21:45:21,857 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-20 17:45:33] 2026-03-20 21:45:21,857 | INFO     | traces error code: 0
[2026-03-20 17:45:33] 2026-03-20 21:45:21,858 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-20 17:45:33] 2026-03-20 21:45:31,763 | INFO     | PID=2109983 has CPU usage=6.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-20 17:45:33] 2026-03-20 21:45:31,763 | INFO     | .. there are 23 such processes running
[2026-03-20 17:45:33] 2026-03-20 21:45:31,768 | INFO     | found 0 job(s) in 20 queues
[2026-03-20 17:45:33] 2026-03-20 21:45:31,769 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-20 17:45:33] 2026-03-20 21:45:31,769 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-20 17:45:33] 2026-03-20 21:45:31,769 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-20 17:45:33] 2026-03-20 21:45:31,769 | CRITICAL | thread 'MainThread' is not alive
[2026-03-20 17:45:33] 2026-03-20 21:45:31,769 | INFO     | [monitor] control thread has ended
[2026-03-20 17:45:33] 2026-03-20 21:45:32,206 [wrapper] ==== pilot stdout END ====
[2026-03-20 17:45:33] 2026-03-20 21:45:32,256 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-20 17:45:33] 2026-03-20 21:45:32,280 [wrapper] pilotpid: 2109983
[2026-03-20 17:45:33] 2026-03-20 21:45:32,296 [wrapper] Pilot exit status: 0
[2026-03-20 17:45:33] 2026-03-20 21:45:32,573 [wrapper] pandaids: 7057373993 7057373993
[2026-03-20 17:45:33] 2026-03-20 21:45:32,821 [wrapper] cleanup supervisor_pilot 3458854 2109984
[2026-03-20 17:45:33] 2026-03-20 21:45:32,843 [wrapper] Test setup, not cleaning
[2026-03-20 17:45:33] 2026-03-20 21:45:32,888 [wrapper] apfmon messages muted
[2026-03-20 17:45:33] 2026-03-20 21:45:32,911 [wrapper] ==== wrapper stdout END ====
[2026-03-20 17:45:33] 2026-03-20 21:45:32,949 [wrapper] ==== wrapper stderr END ====
[2026-03-20 17:45:33]  *** Error codes and diagnostics ***
[2026-03-20 17:45:33]     "exeErrorCode": 0,
[2026-03-20 17:45:33]     "exeErrorDiag": "",
[2026-03-20 17:45:33]     "pilotErrorCode": 0,
[2026-03-20 17:45:33]     "pilotErrorDiag": "",
[2026-03-20 17:45:33]  *** Listing of results directory ***
[2026-03-20 17:45:33] total 692204
[2026-03-20 17:45:33] drwx------. 5 boincer umatlas      4096 Mar 10 12:00 pilot3
[2026-03-20 17:45:33] -rw-r--r--. 1 boincer umatlas    585013 Mar 17 14:29 pilot3.tar.gz
[2026-03-20 17:45:33] -rw-r--r--. 1 boincer umatlas      5111 Mar 17 14:30 queuedata.json
[2026-03-20 17:45:33] -rwx------. 1 boincer umatlas     36322 Mar 17 14:31 runpilot2-wrapper.sh
[2026-03-20 17:45:33] -rw-r--r--. 1 boincer umatlas       100 Mar 20 05:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-20 17:45:33] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 20 05:19 run_atlas
[2026-03-20 17:45:33] -rw-r--r--. 1 boincer umatlas       105 Mar 20 05:19 job.xml
[2026-03-20 17:45:33] -rw-r--r--. 3 boincer umatlas 237827966 Mar 20 05:19 EVNT.49134106._000009.pool.root.1
[2026-03-20 17:45:33] -rw-r--r--. 3 boincer umatlas 237827966 Mar 20 05:19 ATLAS.root_0
[2026-03-20 17:45:33] -rw-r--r--. 2 boincer umatlas     15845 Mar 20 05:19 start_atlas.sh
[2026-03-20 17:45:33] drwxrwx--x. 2 boincer umatlas      4096 Mar 20 05:19 shared
[2026-03-20 17:45:33] -rw-r--r--. 2 boincer umatlas    597540 Mar 20 05:19 input.tar.gz
[2026-03-20 17:45:33] -rw-r--r--. 1 boincer umatlas         0 Mar 20 05:19 boinc_lockfile
[2026-03-20 17:45:33] -rw-r--r--. 1 boincer umatlas      2619 Mar 20 09:30 pandaJob.out
[2026-03-20 17:45:33] -rw-------. 1 boincer umatlas        57 Mar 20 09:30 setup.sh.local
[2026-03-20 17:45:33] -rw-------. 1 boincer umatlas   1008614 Mar 20 09:31 agis_schedconf.cvmfs.json
[2026-03-20 17:45:33] -rw-------. 1 boincer umatlas       441 Mar 20 09:31 workernode_map.json
[2026-03-20 17:45:33] -rw-r--r--. 1 boincer umatlas      6844 Mar 20 17:40 init_data.xml
[2026-03-20 17:45:33] -rw-------. 1 boincer umatlas 220466211 Mar 20 17:43 HITS.49176475._000215.pool.root.1
[2026-03-20 17:45:33] -rw-r--r--. 1 boincer umatlas       532 Mar 20 17:43 boinc_task_state.xml
[2026-03-20 17:45:33] -rw-------. 1 boincer umatlas      1049 Mar 20 17:44 memory_monitor_summary.json
[2026-03-20 17:45:33] -rw-------. 1 boincer umatlas   1511579 Mar 20 17:44 agis_ddmendpoints.agis.ALL.json
[2026-03-20 17:45:33] -rw-------. 1 boincer umatlas    669635 Mar 20 17:44 log.49176475._000215.job.log.tgz.1
[2026-03-20 17:45:33] -rw-------. 1 boincer umatlas      6396 Mar 20 17:44 heartbeat.json
[2026-03-20 17:45:33] -rw-------. 1 boincer umatlas        96 Mar 20 17:45 pilot_heartbeat.json
[2026-03-20 17:45:33] -rw-------. 1 boincer umatlas       893 Mar 20 17:45 pilotlog.txt
[2026-03-20 17:45:33] -rw-------. 1 boincer umatlas   3709276 Mar 20 17:45 log.49176475._000215.job.log.1
[2026-03-20 17:45:33] -rw-r--r--. 1 boincer umatlas      8192 Mar 20 17:45 boinc_mmap_file
[2026-03-20 17:45:33] -rw-r--r--. 1 boincer umatlas        29 Mar 20 17:45 wrapper_checkpoint.txt
[2026-03-20 17:45:33] -rw-------. 1 boincer umatlas       357 Mar 20 17:45 output.list
[2026-03-20 17:45:33] -rw-r--r--. 1 boincer umatlas       620 Mar 20 17:45 runtime_log
[2026-03-20 17:45:33] -rw-------. 1 boincer umatlas   4392960 Mar 20 17:45 result.tar.gz
[2026-03-20 17:45:33] -rw-------. 1 boincer umatlas       785 Mar 20 17:45 TCzLDmENoM9n9Rq4apOajLDm4fhM0noT9bVooX4SDmMmxLDm1df71m.diag
[2026-03-20 17:45:33] -rw-r--r--. 1 boincer umatlas      9427 Mar 20 17:45 runtime_log.err
[2026-03-20 17:45:33] -rw-r--r--. 1 boincer umatlas     23610 Mar 20 17:45 stderr.txt
[2026-03-20 17:45:33] HITS file was successfully produced:
[2026-03-20 17:45:33] -rw-------. 1 boincer umatlas 220466211 Mar 20 17:43 shared/HITS.pool.root.1
[2026-03-20 17:45:33]  *** Contents of shared directory: ***
[2026-03-20 17:45:33] total 452452
[2026-03-20 17:45:33] -rw-r--r--. 3 boincer umatlas 237827966 Mar 20 05:19 ATLAS.root_0
[2026-03-20 17:45:33] -rw-r--r--. 2 boincer umatlas     15845 Mar 20 05:19 start_atlas.sh
[2026-03-20 17:45:33] -rw-r--r--. 2 boincer umatlas    597540 Mar 20 05:19 input.tar.gz
[2026-03-20 17:45:33] -rw-------. 1 boincer umatlas 220466211 Mar 20 17:43 HITS.pool.root.1
[2026-03-20 17:45:33] -rw-------. 1 boincer umatlas   4392960 Mar 20 17:45 result.tar.gz
17:45:35 (2098502): run_atlas exited; CPU time 81722.060061
17:45:35 (2098502): called boinc_finish(0)

</stderr_txt>
]]>

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