Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
01:54:39 (30167): wrapper (7.7.26015): starting
01:54:39 (30167): wrapper: running run_atlas (--nthreads 8)
[2026-03-20 01:54:39] Arguments: --nthreads 8
[2026-03-20 01:54:39] Threads: 8
[2026-03-20 01:54:39] Checking for CVMFS
[2026-03-20 01:54:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-20 01:54:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-20 01:54:40] Running cvmfs_config stat atlas.cern.ch
[2026-03-20 01:54:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-20 01:54:40] 2.11.2.0 2869 2397 71820 157486 2 1 14335529 20275201 1 130560 0 415163 99.967 88189 38359 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-20 01:54:40] CVMFS is ok
[2026-03-20 01:54:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-20 01:54:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-20 01:54:40] Further information can be found at the LHC@home message board.
[2026-03-20 01:54:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-20 01:54:40] Checking for apptainer binary...
[2026-03-20 01:54:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-20 01:54:40] Running /usr/bin/apptainer --version
[2026-03-20 01:54:40] apptainer version 1.3.2-1.el7
[2026-03-20 01:54:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-20 01:54:41] c-204-15.aglt2.org
[2026-03-20 01:54:41] apptainer works
[2026-03-20 01:54:41] Set ATHENA_PROC_NUMBER=8
[2026-03-20 01:54:41] Set ATHENA_CORE_NUMBER=8
[2026-03-20 01:54:41] Starting ATLAS job with PandaID=7050586018
[2026-03-20 01:54:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-20 04:21:52]  *** The last 200 lines of the pilot log: ***
[2026-03-20 04:21:53] 2026-03-20 08:21:19,759 | INFO     | extracted standard memory fields from prmon json
[2026-03-20 04:21:53] 2026-03-20 08:21:19,759 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-20 04:21:53] 2026-03-20 08:21:19,760 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-20 04:21:53] 2026-03-20 08:21:19,760 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-20 04:21:53] 2026-03-20 08:21:19,763 | INFO     | fitting pss+swap vs Time
[2026-03-20 04:21:53] 2026-03-20 08:21:19,763 | INFO     | sum of square deviations: 925859220.0
[2026-03-20 04:21:53] 2026-03-20 08:21:19,764 | INFO     | sum of deviations: 1690811847.0000057
[2026-03-20 04:21:53] 2026-03-20 08:21:19,764 | INFO     | mean x: 1773990505.5
[2026-03-20 04:21:53] 2026-03-20 08:21:19,764 | INFO     | mean y: 2491219.0416666665
[2026-03-20 04:21:53] 2026-03-20 08:21:19,764 | INFO     | intersect: -3237185071.231631
[2026-03-20 04:21:53] 2026-03-20 08:21:19,764 | INFO     | chi2: 2.384939592285927
[2026-03-20 04:21:53] 2026-03-20 08:21:19,765 | INFO     | sum of square deviations: 832722590.0
[2026-03-20 04:21:53] 2026-03-20 08:21:19,765 | INFO     | sum of deviations: 11066939884.000008
[2026-03-20 04:21:53] 2026-03-20 08:21:19,765 | INFO     | mean x: 1773990353.0
[2026-03-20 04:21:53] 2026-03-20 08:21:19,766 | INFO     | mean y: 2506131.4244604316
[2026-03-20 04:21:53] 2026-03-20 08:21:19,766 | INFO     | intersect: -23573946371.73983
[2026-03-20 04:21:53] 2026-03-20 08:21:19,766 | INFO     | chi2: 1.6227482086857195
[2026-03-20 04:21:53] 2026-03-20 08:21:19,766 | INFO     | current chi2=1.6227482086857195 (change=31.958519455398836 %)
[2026-03-20 04:21:53] 2026-03-20 08:21:19,766 | INFO     | sum of square deviations: 746051197.5
[2026-03-20 04:21:53] 2026-03-20 08:21:19,767 | INFO     | sum of deviations: 10672199825.499998
[2026-03-20 04:21:53] 2026-03-20 08:21:19,767 | INFO     | mean x: 1773990200.5
[2026-03-20 04:21:53] 2026-03-20 08:21:19,767 | INFO     | mean y: 2505436.574626866
[2026-03-20 04:21:53] 2026-03-20 08:21:19,767 | INFO     | intersect: -25374275636.435856
[2026-03-20 04:21:53] 2026-03-20 08:21:19,768 | INFO     | chi2: 1.6249738796627569
[2026-03-20 04:21:53] 2026-03-20 08:21:19,768 | INFO     | current chi2=1.6249738796627569 (change=-0.1371544251366022 %)
[2026-03-20 04:21:53] 2026-03-20 08:21:19,768 | INFO     | right removable region: 133
[2026-03-20 04:21:53] 2026-03-20 08:21:19,768 | INFO     | sum of square deviations: 832722590.0
[2026-03-20 04:21:53] 2026-03-20 08:21:19,769 | INFO     | sum of deviations: -19880759916.999992
[2026-03-20 04:21:53] 2026-03-20 08:21:19,769 | INFO     | mean x: 1773990658.0
[2026-03-20 04:21:53] 2026-03-20 08:21:19,769 | INFO     | mean y: 2525947.6258992804
[2026-03-20 04:21:53] 2026-03-20 08:21:19,769 | INFO     | intersect: 42355504947.14943
[2026-03-20 04:21:53] 2026-03-20 08:21:19,770 | INFO     | chi2: 0.8980347235068807
[2026-03-20 04:21:53] 2026-03-20 08:21:19,770 | INFO     | current chi2=0.8980347235068807 (change=62.345598755978195 %)
[2026-03-20 04:21:53] 2026-03-20 08:21:19,770 | INFO     | sum of square deviations: 746051197.5
[2026-03-20 04:21:53] 2026-03-20 08:21:19,771 | INFO     | sum of deviations: -18025231142.5
[2026-03-20 04:21:53] 2026-03-20 08:21:19,771 | INFO     | mean x: 1773990810.5
[2026-03-20 04:21:53] 2026-03-20 08:21:19,771 | INFO     | mean y: 2522583.4402985075
[2026-03-20 04:21:53] 2026-03-20 08:21:19,771 | INFO     | intersect: 42863648617.53317
[2026-03-20 04:21:53] 2026-03-20 08:21:19,771 | INFO     | chi2: 0.8830161548349209
[2026-03-20 04:21:53] 2026-03-20 08:21:19,771 | INFO     | current chi2=0.8830161548349209 (change=1.6723817330037527 %)
[2026-03-20 04:21:53] 2026-03-20 08:21:19,771 | INFO     | left removable region: 20
[2026-03-20 04:21:53] 2026-03-20 08:21:19,772 | INFO     | sum of square deviations: 447383272.0
[2026-03-20 04:21:53] 2026-03-20 08:21:19,772 | INFO     | sum of deviations: 498894843.99999994
[2026-03-20 04:21:53] 2026-03-20 08:21:19,772 | INFO     | mean x: 1773990780.0
[2026-03-20 04:21:53] 2026-03-20 08:21:19,773 | INFO     | mean y: 2519847.4955752213
[2026-03-20 04:21:53] 2026-03-20 08:21:19,773 | INFO     | intersect: -1975727683.9533393
[2026-03-20 04:21:53] 2026-03-20 08:21:19,773 | INFO     | chi2: 0.013120668221534322
[2026-03-20 04:21:53] 2026-03-20 08:21:19,773 | INFO     | current memory leak: 1.12 B/s (using 113 data points, chi2=0.01)
[2026-03-20 04:21:53] 2026-03-20 08:21:19,773 | INFO     | could have reported an average CPU frequency of 1679 MHz (8 samples)
[2026-03-20 04:21:53] 2026-03-20 08:21:19,774 | INFO     | ..............................
[2026-03-20 04:21:53] 2026-03-20 08:21:19,774 | INFO     | . Timing measurements:
[2026-03-20 04:21:53] 2026-03-20 08:21:19,774 | INFO     | . get job = 0 s
[2026-03-20 04:21:53] 2026-03-20 08:21:19,774 | INFO     | . initial setup = 8 s
[2026-03-20 04:21:53] 2026-03-20 08:21:19,774 | INFO     | . payload setup = 17 s
[2026-03-20 04:21:53] 2026-03-20 08:21:19,774 | INFO     | . stage-in = 0 s
[2026-03-20 04:21:53] 2026-03-20 08:21:19,774 | INFO     | . payload execution = 8735 s
[2026-03-20 04:21:53] 2026-03-20 08:21:19,774 | INFO     | . stage-out = 0 s
[2026-03-20 04:21:53] 2026-03-20 08:21:19,774 | INFO     | . log creation = 0 s
[2026-03-20 04:21:53] 2026-03-20 08:21:19,775 | INFO     | ..............................
[2026-03-20 04:21:53] 2026-03-20 08:21:20,047 | INFO     | 
[2026-03-20 04:21:53] 2026-03-20 08:21:20,047 | INFO     | job summary report
[2026-03-20 04:21:53] 2026-03-20 08:21:20,048 | INFO     | --------------------------------------------------
[2026-03-20 04:21:53] 2026-03-20 08:21:20,048 | INFO     | PanDA job id: 7050586018
[2026-03-20 04:21:53] 2026-03-20 08:21:20,048 | INFO     | task id: 48967085
[2026-03-20 04:21:53] 2026-03-20 08:21:20,048 | INFO     | errors: (none)
[2026-03-20 04:21:53] 2026-03-20 08:21:20,048 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-20 04:21:53] 2026-03-20 08:21:20,048 | INFO     | pilot state: finished 
[2026-03-20 04:21:53] 2026-03-20 08:21:20,048 | INFO     | transexitcode: 0
[2026-03-20 04:21:53] 2026-03-20 08:21:20,049 | INFO     | exeerrorcode: 0
[2026-03-20 04:21:53] 2026-03-20 08:21:20,049 | INFO     | exeerrordiag: 
[2026-03-20 04:21:53] 2026-03-20 08:21:20,049 | INFO     | exitcode: 0
[2026-03-20 04:21:53] 2026-03-20 08:21:20,049 | INFO     | exitmsg: OK
[2026-03-20 04:21:53] 2026-03-20 08:21:20,049 | INFO     | cpuconsumptiontime: 65220 s
[2026-03-20 04:21:53] 2026-03-20 08:21:20,049 | INFO     | nevents: 400
[2026-03-20 04:21:53] 2026-03-20 08:21:20,049 | INFO     | neventsw: 0
[2026-03-20 04:21:53] 2026-03-20 08:21:20,049 | INFO     | pid: 6087
[2026-03-20 04:21:53] 2026-03-20 08:21:20,050 | INFO     | pgrp: 6087
[2026-03-20 04:21:53] 2026-03-20 08:21:20,050 | INFO     | corecount: 8
[2026-03-20 04:21:53] 2026-03-20 08:21:20,050 | INFO     | event service: False
[2026-03-20 04:21:53] 2026-03-20 08:21:20,050 | INFO     | sizes: {0: 2280036, 1: 2280242, 11: 2280270, 8757: 2308316, 8758: 2317314, 8759: 2317370, 8760: 2317692}
[2026-03-20 04:21:53] 2026-03-20 08:21:20,050 | INFO     | --------------------------------------------------
[2026-03-20 04:21:53] 2026-03-20 08:21:20,050 | INFO     | 
[2026-03-20 04:21:53] 2026-03-20 08:21:20,050 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-20 04:21:53] 2026-03-20 08:21:20,078 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-20 04:21:53] 2026-03-20 08:21:20,078 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-20 04:21:53] 2026-03-20 08:21:20,078 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-20 04:21:53] 2026-03-20 08:21:20,079 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-20 04:21:53] 2026-03-20 08:21:20,079 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-20 04:21:53] 2026-03-20 08:21:20,079 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-20 04:21:53] 2026-03-20 08:21:20,079 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-20 04:21:53] 2026-03-20 08:21:20,079 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-20 04:21:53] 2026-03-20 08:21:20,080 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-20 04:21:53] 2026-03-20 08:21:20,080 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-20 04:21:53] 2026-03-20 08:21:20,080 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-20 04:21:53] 2026-03-20 08:21:20,080 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-20 04:21:53] 2026-03-20 08:21:20,080 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-20 04:21:53] 2026-03-20 08:21:20,080 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-20 04:21:53] 2026-03-20 08:21:20,081 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-20 04:21:53] 2026-03-20 08:21:20,081 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-20 04:21:53] 2026-03-20 08:21:20,081 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-20 04:21:53] 2026-03-20 08:21:20,081 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-20 04:21:53] 2026-03-20 08:21:20,081 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-20 04:21:53] 2026-03-20 08:21:20,081 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-20 04:21:53] 2026-03-20 08:21:20,082 | INFO     | job 7050586018 has completed (purged errors)
[2026-03-20 04:21:53] 2026-03-20 08:21:20,082 | INFO     | overall cleanup function is called
[2026-03-20 04:21:53] 2026-03-20 08:21:20,429 | INFO     | PID=1459 has CPU usage=7.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-20 04:21:53] 2026-03-20 08:21:21,090 | INFO     | --- collectZombieJob: --- 10, [6087]
[2026-03-20 04:21:53] 2026-03-20 08:21:21,090 | INFO     | zombie collector waiting for pid 6087
[2026-03-20 04:21:53] 2026-03-20 08:21:21,091 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-20 04:21:53] 2026-03-20 08:21:21,091 | INFO     | collected zombie processes
[2026-03-20 04:21:53] 2026-03-20 08:21:21,091 | INFO     | will attempt to kill all subprocesses of pid=6087
[2026-03-20 04:21:53] 2026-03-20 08:21:21,182 | INFO     | process IDs to be killed: [6087] (in reverse order)
[2026-03-20 04:21:53] 2026-03-20 08:21:21,242 | WARNING  | found no corresponding commands to process id(s)
[2026-03-20 04:21:53] 2026-03-20 08:21:21,243 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-20 04:21:53] 2026-03-20 08:21:21,247 | INFO     | did not find any defunct processes belonging to 6087
[2026-03-20 04:21:53] 2026-03-20 08:21:21,251 | INFO     | did not find any defunct processes belonging to 6087
[2026-03-20 04:21:53] 2026-03-20 08:21:21,251 | INFO     | ready for new job
[2026-03-20 04:21:53] 2026-03-20 08:21:21,251 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-20 04:21:53] 2026-03-20 08:21:21,253 | INFO     | **************************************
[2026-03-20 04:21:53] 2026-03-20 08:21:21,253 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-20 04:21:53] 2026-03-20 08:21:21,253 | INFO     | **************************************
[2026-03-20 04:21:53] 2026-03-20 08:21:21,254 | INFO     | 
[2026-03-20 04:21:53] 2026-03-20 08:21:21,254 | INFO     | architecture information:
[2026-03-20 04:21:53] 2026-03-20 08:21:21,255 | INFO     | executing command: cat /etc/os-release
[2026-03-20 04:21:53] 2026-03-20 08:21:21,272 | INFO     | cat /etc/os-release:
[2026-03-20 04:21:53] NAME="CentOS Linux"
[2026-03-20 04:21:53] VERSION="7 (Core)"
[2026-03-20 04:21:53] ID="centos"
[2026-03-20 04:21:53] ID_LIKE="rhel fedora"
[2026-03-20 04:21:53] VERSION_ID="7"
[2026-03-20 04:21:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-20 04:21:53] ANSI_COLOR="0;31"
[2026-03-20 04:21:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-20 04:21:53] HOME_URL="https://www.centos.org/"
[2026-03-20 04:21:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-20 04:21:53] 
[2026-03-20 04:21:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-20 04:21:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-20 04:21:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-20 04:21:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-20 04:21:53] 
[2026-03-20 04:21:53] 2026-03-20 08:21:21,273 | INFO     | **************************************
[2026-03-20 04:21:53] 2026-03-20 08:21:21,776 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-20 04:21:53] 2026-03-20 08:21:21,794 | INFO     | sufficient remaining disk space (17934843904 B)
[2026-03-20 04:21:53] 2026-03-20 08:21:21,795 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-20 04:21:53] 2026-03-20 08:21:21,795 | INFO     | current server update state: UPDATING_FINAL
[2026-03-20 04:21:53] 2026-03-20 08:21:21,795 | INFO     | update_server=False
[2026-03-20 04:21:53] 2026-03-20 08:21:21,795 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-20 04:21:53] 2026-03-20 08:21:21,796 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-20 04:21:53] 2026-03-20 08:21:21,796 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-20 04:21:53] 2026-03-20 08:21:22,353 | WARNING  | process 6087 can no longer be monitored (due to stat problems) - aborting
[2026-03-20 04:21:53] 2026-03-20 08:21:22,426 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-20 04:21:53] 2026-03-20 08:21:22,465 | INFO     | [monitor] cgroup control has ended
[2026-03-20 04:21:53] 2026-03-20 08:21:22,514 | INFO     | number of running child processes to parent process 6087: 1
[2026-03-20 04:21:53] 2026-03-20 08:21:22,514 | INFO     | maximum number of monitored processes: 6
[2026-03-20 04:21:53] 2026-03-20 08:21:22,514 | INFO     | aborting job monitoring since job object (job id=7050586018) has expired
[2026-03-20 04:21:53] 2026-03-20 08:21:22,515 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-20 04:21:53] 2026-03-20 08:21:22,515 | INFO     | will abort loop
[2026-03-20 04:21:53] 2026-03-20 08:21:22,543 | INFO     | all data control threads have been joined
[2026-03-20 04:21:53] 2026-03-20 08:21:22,666 | INFO     | all job control threads have been joined
[2026-03-20 04:21:53] 2026-03-20 08:21:22,801 | INFO     | [job] retrieve thread has finished
[2026-03-20 04:21:53] 2026-03-20 08:21:22,802 | INFO     | [job] queue monitor thread has finished
[2026-03-20 04:21:53] 2026-03-20 08:21:23,123 | INFO     | [payload] failed_post thread has finished
[2026-03-20 04:21:53] 2026-03-20 08:21:23,155 | INFO     | all payload control threads have been joined
[2026-03-20 04:21:53] 2026-03-20 08:21:23,292 | INFO     | [data] copytool_in thread has finished
[2026-03-20 04:21:53] 2026-03-20 08:21:23,293 | INFO     | [payload] validate_pre thread has finished
[2026-03-20 04:21:53] 2026-03-20 08:21:23,520 | INFO     | [job] job monitor thread has finished
[2026-03-20 04:21:53] 2026-03-20 08:21:23,549 | INFO     | [data] control thread has finished
[2026-03-20 04:21:53] 2026-03-20 08:21:23,675 | INFO     | [job] control thread has finished
[2026-03-20 04:21:53] 2026-03-20 08:21:23,802 | INFO     | [data] copytool_out thread has finished
[2026-03-20 04:21:53] 2026-03-20 08:21:23,824 | INFO     | [payload] execute_payloads thread has finished
[2026-03-20 04:21:53] 2026-03-20 08:21:24,008 | INFO     | [job] create_data_payload thread has finished
[2026-03-20 04:21:53] 2026-03-20 08:21:24,027 | INFO     | [job] validate thread has finished
[2026-03-20 04:21:53] 2026-03-20 08:21:24,159 | INFO     | [payload] control thread has finished
[2026-03-20 04:21:53] 2026-03-20 08:21:24,251 | INFO     | [payload] validate_post thread has finished
[2026-03-20 04:21:53] 2026-03-20 08:21:24,884 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-20 04:21:53] 2026-03-20 08:21:28,889 | INFO     | [data] queue_monitor thread has finished
[2026-03-20 04:21:53] 2026-03-20 08:21:32,201 | INFO     | job.realtimelogging is not enabled
[2026-03-20 04:21:53] 2026-03-20 08:21:33,206 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-20 04:21:53] 2026-03-20 08:21:34,125 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140216478205760)>', '<ExcThread(monitor, started 140215867905792)>']
[2026-03-20 04:21:53] 2026-03-20 08:21:39,156 | INFO     | all workflow threads have been joined
[2026-03-20 04:21:53] 2026-03-20 08:21:39,158 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-20 04:21:53] 2026-03-20 08:21:39,173 | INFO     | traces error code: 0
[2026-03-20 04:21:53] 2026-03-20 08:21:39,173 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-20 04:21:53] 2026-03-20 08:21:52,646 | INFO     | PID=1459 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-20 04:21:53] 2026-03-20 08:21:52,647 | INFO     | found 0 job(s) in 20 queues
[2026-03-20 04:21:53] 2026-03-20 08:21:52,647 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-20 04:21:53] 2026-03-20 08:21:52,647 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-20 04:21:53] 2026-03-20 08:21:52,647 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-20 04:21:53] 2026-03-20 08:21:52,647 | INFO     | [monitor] control thread has ended
[2026-03-20 04:21:53] 2026-03-20 08:21:52,773 [wrapper] ==== pilot stdout END ====
[2026-03-20 04:21:53] 2026-03-20 08:21:52,777 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-20 04:21:53] 2026-03-20 08:21:52,782 [wrapper] pilotpid: 1459
[2026-03-20 04:21:53] 2026-03-20 08:21:52,786 [wrapper] Pilot exit status: 0
[2026-03-20 04:21:53] 2026-03-20 08:21:52,806 [wrapper] pandaids: 7050586018
[2026-03-20 04:21:53] 2026-03-20 08:21:52,849 [wrapper] cleanup supervisor_pilot 27199 1460
[2026-03-20 04:21:53] 2026-03-20 08:21:52,854 [wrapper] Test setup, not cleaning
[2026-03-20 04:21:53] 2026-03-20 08:21:52,859 [wrapper] apfmon messages muted
[2026-03-20 04:21:53] 2026-03-20 08:21:52,863 [wrapper] ==== wrapper stdout END ====
[2026-03-20 04:21:53] 2026-03-20 08:21:52,868 [wrapper] ==== wrapper stderr END ====
[2026-03-20 04:21:53]  *** Error codes and diagnostics ***
[2026-03-20 04:21:53]     "exeErrorCode": 0,
[2026-03-20 04:21:53]     "exeErrorDiag": "",
[2026-03-20 04:21:53]     "pilotErrorCode": 0,
[2026-03-20 04:21:53]     "pilotErrorDiag": "",
[2026-03-20 04:21:53]  *** Listing of results directory ***
[2026-03-20 04:21:53] total 406776
[2026-03-20 04:21:53] -rw-r--r-- 1 boincer umatlas    585013 Mar 11 21:00 pilot3.tar.gz
[2026-03-20 04:21:53] -rw-r--r-- 1 boincer umatlas      5111 Mar 11 21:01 queuedata.json
[2026-03-20 04:21:53] -rwx------ 1 boincer umatlas     36322 Mar 11 21:01 runpilot2-wrapper.sh
[2026-03-20 04:21:53] -rw-r--r-- 1 boincer umatlas       100 Mar 20 01:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-20 04:21:53] -rwxr-xr-x 1 boincer umatlas      7986 Mar 20 01:54 run_atlas
[2026-03-20 04:21:53] -rw-r--r-- 1 boincer umatlas       105 Mar 20 01:54 job.xml
[2026-03-20 04:21:53] -rw-r--r-- 2 boincer umatlas 212617779 Mar 20 01:54 EVNT.48967083._000516.pool.root.1
[2026-03-20 04:21:53] -rw-r--r-- 2 boincer umatlas     15845 Mar 20 01:54 start_atlas.sh
[2026-03-20 04:21:53] drwxrwx--x 2 boincer umatlas      4096 Mar 20 01:54 shared
[2026-03-20 04:21:53] -rw-r--r-- 2 boincer umatlas    597523 Mar 20 01:54 input.tar.gz
[2026-03-20 04:21:53] -rw-r--r-- 1 boincer umatlas         0 Mar 20 01:54 boinc_lockfile
[2026-03-20 04:21:53] -rw-r--r-- 1 boincer umatlas      2563 Mar 20 01:54 pandaJob.out
[2026-03-20 04:21:53] -rw------- 1 boincer umatlas        57 Mar 20 01:54 setup.sh.local
[2026-03-20 04:21:53] -rw------- 1 boincer umatlas   1010740 Mar 20 01:55 agis_schedconf.cvmfs.json
[2026-03-20 04:21:53] -rw------- 1 boincer umatlas   1511579 Mar 20 01:55 agis_ddmendpoints.agis.ALL.json
[2026-03-20 04:21:53] -rw------- 1 boincer umatlas       432 Mar 20 01:55 workernode_map.json
[2026-03-20 04:21:53] drwx------ 5 boincer umatlas      4096 Mar 20 01:55 pilot3
[2026-03-20 04:21:53] -rw-r--r-- 1 boincer umatlas      5909 Mar 20 04:09 init_data.xml
[2026-03-20 04:21:53] -rw------- 1 boincer umatlas 196736530 Mar 20 04:20 HITS.48967085._012544.pool.root.1
[2026-03-20 04:21:53] -rw------- 1 boincer umatlas        95 Mar 20 04:21 pilot_heartbeat.json
[2026-03-20 04:21:53] -rw-r--r-- 1 boincer umatlas       529 Mar 20 04:21 boinc_task_state.xml
[2026-03-20 04:21:53] -rw------- 1 boincer umatlas      1049 Mar 20 04:21 memory_monitor_summary.json
[2026-03-20 04:21:53] -rw------- 1 boincer umatlas    396120 Mar 20 04:21 log.48967085._012544.job.log.tgz.1
[2026-03-20 04:21:53] -rw------- 1 boincer umatlas      6395 Mar 20 04:21 heartbeat.json
[2026-03-20 04:21:53] -rw-r--r-- 1 boincer umatlas      8192 Mar 20 04:21 boinc_mmap_file
[2026-03-20 04:21:53] -rw-r--r-- 1 boincer umatlas        27 Mar 20 04:21 wrapper_checkpoint.txt
[2026-03-20 04:21:53] -rw------- 1 boincer umatlas       744 Mar 20 04:21 pilotlog.txt
[2026-03-20 04:21:53] -rw------- 1 boincer umatlas   1228639 Mar 20 04:21 log.48967085._012544.job.log.1
[2026-03-20 04:21:53] -rw------- 1 boincer umatlas       357 Mar 20 04:21 output.list
[2026-03-20 04:21:53] -rw-r--r-- 1 boincer umatlas       620 Mar 20 04:21 runtime_log
[2026-03-20 04:21:53] -rw------- 1 boincer umatlas   1638400 Mar 20 04:21 result.tar.gz
[2026-03-20 04:21:53] -rw-r--r-- 1 boincer umatlas      9341 Mar 20 04:21 runtime_log.err
[2026-03-20 04:21:53] -rw------- 1 boincer umatlas       661 Mar 20 04:21 k95NDmwbjK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmxXlLDm9yznwm.diag
[2026-03-20 04:21:53] -rw-r--r-- 1 boincer umatlas     21151 Mar 20 04:21 stderr.txt
[2026-03-20 04:21:53] HITS file was successfully produced:
[2026-03-20 04:21:53] -rw------- 1 boincer umatlas 196736530 Mar 20 04:20 shared/HITS.pool.root.1
[2026-03-20 04:21:53]  *** Contents of shared directory: ***
[2026-03-20 04:21:53] total 401972
[2026-03-20 04:21:53] -rw-r--r-- 2 boincer umatlas 212617779 Mar 20 01:54 ATLAS.root_0
[2026-03-20 04:21:53] -rw-r--r-- 2 boincer umatlas     15845 Mar 20 01:54 start_atlas.sh
[2026-03-20 04:21:53] -rw-r--r-- 2 boincer umatlas    597523 Mar 20 01:54 input.tar.gz
[2026-03-20 04:21:53] -rw------- 1 boincer umatlas 196736530 Mar 20 04:20 HITS.pool.root.1
[2026-03-20 04:21:53] -rw------- 1 boincer umatlas   1638400 Mar 20 04:21 result.tar.gz
04:21:54 (30167): run_atlas exited; CPU time 65251.636642
04:21:54 (30167): called boinc_finish(0)

</stderr_txt>
]]>

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