Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
18:11:33 (158575): wrapper (7.7.26015): starting
18:11:33 (158575): wrapper: running run_atlas (--nthreads 4)
[2026-03-21 18:11:33] Arguments: --nthreads 4
[2026-03-21 18:11:33] Threads: 4
[2026-03-21 18:11:33] Checking for CVMFS
[2026-03-21 18:11:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-21 18:11:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-21 18:11:33] Running cvmfs_config stat atlas.cern.ch
[2026-03-21 18:11:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-21 18:11:34] 2.13.3.0 11582 48567 47484 157543 2 50 20839872 33554433 0 130560 0 24300255 99.969 2024132 306 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:25468 1
[2026-03-21 18:11:34] CVMFS is ok
[2026-03-21 18:11:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-21 18:11:34] Checking for apptainer binary...
[2026-03-21 18:11:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-21 18:11:34] Running /usr/bin/apptainer --version
[2026-03-21 18:11:34] apptainer version 1.4.5
[2026-03-21 18:11:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-21 18:11:34] INFO: /etc/singularity/ exists; cleanup by system administrator is not complete (see https://apptainer.org/docs/admin/latest/singularity_migration.html) Evangelos-Katikos
[2026-03-21 18:11:34] apptainer works
[2026-03-21 18:11:34] Set ATHENA_PROC_NUMBER=4
[2026-03-21 18:11:34] Set ATHENA_CORE_NUMBER=4
[2026-03-21 18:11:34] Starting ATLAS job with PandaID=7049312920
[2026-03-21 18:11:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/ek/BOINC/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-21 19:20:11]  *** The last 200 lines of the pilot log: ***
[2026-03-21 19:20:11]  filetype=log
[2026-03-21 19:20:11]  guid=7c6397b1-686e-4b0d-89d5-b2a90f9e1029
[2026-03-21 19:20:11]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-21 19:20:11]  is_altstaged=None
[2026-03-21 19:20:11]  is_tar=False
[2026-03-21 19:20:11]  lfn=log.48967085._004065.job.log.tgz.1
[2026-03-21 19:20:11]  mtime=0
[2026-03-21 19:20:11]  protocol_id=None
[2026-03-21 19:20:11]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-21 19:20:11]  replicas=None
[2026-03-21 19:20:11]  scope=mc23_13p6TeV
[2026-03-21 19:20:11]  status=None
[2026-03-21 19:20:11]  status_code=0
[2026-03-21 19:20:11]  storage_token=
[2026-03-21 19:20:11]  surl=/home/ek/BOINC/slots/0/PanDA_Pilot-7049312920/log.48967085._004065.job.log.tgz.1
[2026-03-21 19:20:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/df/d6/log.48967085._004065.job.log.tgz.1
[2026-03-21 19:20:11]  workdir=None
[2026-03-21 19:20:11] ]
[2026-03-21 19:20:11] 2026-03-21 17:19:37,467 | INFO     | transferring file log.48967085._004065.job.log.tgz.1 from /home/ek/BOINC/slots/0/PanDA_Pilot-7049312920/log.48967085._004065.job.log.tgz.1 to /home/ek/BOINC/slots/
[2026-03-21 19:20:11] 2026-03-21 17:19:37,467 | INFO     | executing command: /usr/bin/env mv /home/ek/BOINC/slots/0/PanDA_Pilot-7049312920/log.48967085._004065.job.log.tgz.1 /home/ek/BOINC/slots/0/log.48967085._004065.job
[2026-03-21 19:20:11] 2026-03-21 17:19:37,478 | INFO     | adding to output.list: log.48967085._004065.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/df/d6/log.48967085._004065.job.log.tg
[2026-03-21 19:20:11] 2026-03-21 17:19:37,478 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-21 19:20:11] 2026-03-21 17:19:37,478 | INFO     | summary of transferred files:
[2026-03-21 19:20:11] 2026-03-21 17:19:37,478 | INFO     |  -- lfn=log.48967085._004065.job.log.tgz.1, status_code=0, status=transferred
[2026-03-21 19:20:11] 2026-03-21 17:19:37,478 | INFO     | stage-out finished correctly
[2026-03-21 19:20:11] 2026-03-21 17:19:37,595 | INFO     | PID=162411 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-21 19:20:11] 2026-03-21 17:19:37,725 | INFO     | monitor loop #313: job 0:7049312920 is in state 'finished'
[2026-03-21 19:20:11] 2026-03-21 17:19:37,725 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-21 19:20:11] 2026-03-21 17:19:38,274 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-21 19:20:11] 2026-03-21 17:19:38,595 | INFO     | time since job start (4077s) is within the limit (345600.0s)
[2026-03-21 19:20:11] 2026-03-21 17:19:40,190 | INFO     | job 7049312920 has state=finished
[2026-03-21 19:20:11] 2026-03-21 17:19:40,190 | INFO     | preparing for final server update for job 7049312920 in state='finished'
[2026-03-21 19:20:11] 2026-03-21 17:19:40,190 | INFO     | reading metadata from: /home/ek/BOINC/slots/0/PanDA_Pilot-7049312920/jobReport.json
[2026-03-21 19:20:11] 2026-03-21 17:19:40,191 | INFO     | added worker_node to metadata from /home/ek/BOINC/slots/0/workernode_map.json
[2026-03-21 19:20:11] 2026-03-21 17:19:40,191 | INFO     | this job has now completed (state=finished)
[2026-03-21 19:20:11] 2026-03-21 17:19:40,191 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-21 19:20:11] 2026-03-21 17:19:40,192 | INFO     | log transfer has been attempted: DONE
[2026-03-21 19:20:11] 2026-03-21 17:19:40,192 | INFO     | job 7049312920 has finished - writing final server update
[2026-03-21 19:20:11] 2026-03-21 17:19:40,192 | INFO     | total number of processed events: 400 (read)
[2026-03-21 19:20:11] 2026-03-21 17:19:40,193 | INFO     | using path: /home/ek/BOINC/slots/0/PanDA_Pilot-7049312920/memory_monitor_summary.json (trf name=prmon)
[2026-03-21 19:20:11] 2026-03-21 17:19:40,194 | INFO     | extracted standard info from prmon json
[2026-03-21 19:20:11] 2026-03-21 17:19:40,194 | INFO     | extracted standard memory fields from prmon json
[2026-03-21 19:20:11] 2026-03-21 17:19:40,194 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-21 19:20:11] 2026-03-21 17:19:40,194 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-21 19:20:11] 2026-03-21 17:19:40,194 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-21 19:20:11] 2026-03-21 17:19:40,194 | INFO     | fitting pss+swap vs Time
[2026-03-21 19:20:11] 2026-03-21 17:19:40,194 | INFO     | sum of square deviations: 66971314.58333342
[2026-03-21 19:20:11] 2026-03-21 17:19:40,194 | INFO     | sum of deviations: -902191097.0833334
[2026-03-21 19:20:11] 2026-03-21 17:19:40,194 | INFO     | mean x: 1774111622.5833333
[2026-03-21 19:20:11] 2026-03-21 17:19:40,195 | INFO     | mean y: 2396315.9166666665
[2026-03-21 19:20:11] 2026-03-21 17:19:40,195 | INFO     | intersect: 23901997527.04587
[2026-03-21 19:20:11] 2026-03-21 17:19:40,195 | INFO     | chi2: 0.048506562095139205
[2026-03-21 19:20:11] 2026-03-21 17:19:40,195 | INFO     | current memory leak: -13.47 B/s (using 60 data points, chi2=0.05)
[2026-03-21 19:20:11] 2026-03-21 17:19:40,195 | INFO     | could have reported an average CPU frequency of 2883 MHz (6 samples)
[2026-03-21 19:20:11] 2026-03-21 17:19:40,195 | INFO     | ..............................
[2026-03-21 19:20:11] 2026-03-21 17:19:40,195 | INFO     | . Timing measurements:
[2026-03-21 19:20:11] 2026-03-21 17:19:40,195 | INFO     | . get job = 0 s
[2026-03-21 19:20:11] 2026-03-21 17:19:40,195 | INFO     | . initial setup = 3 s
[2026-03-21 19:20:11] 2026-03-21 17:19:40,195 | INFO     | . payload setup = 3 s
[2026-03-21 19:20:11] 2026-03-21 17:19:40,195 | INFO     | . stage-in = 0 s
[2026-03-21 19:20:11] 2026-03-21 17:19:40,195 | INFO     | . payload execution = 4057 s
[2026-03-21 19:20:11] 2026-03-21 17:19:40,195 | INFO     | . stage-out = 0 s
[2026-03-21 19:20:11] 2026-03-21 17:19:40,195 | INFO     | . log creation = 0 s
[2026-03-21 19:20:11] 2026-03-21 17:19:40,195 | INFO     | ..............................
[2026-03-21 19:20:11] 2026-03-21 17:19:40,242 | INFO     | 
[2026-03-21 19:20:11] 2026-03-21 17:19:40,242 | INFO     | job summary report
[2026-03-21 19:20:11] 2026-03-21 17:19:40,243 | INFO     | --------------------------------------------------
[2026-03-21 19:20:11] 2026-03-21 17:19:40,243 | INFO     | PanDA job id: 7049312920
[2026-03-21 19:20:11] 2026-03-21 17:19:40,243 | INFO     | task id: 48967085
[2026-03-21 19:20:11] 2026-03-21 17:19:40,243 | INFO     | errors: (none)
[2026-03-21 19:20:11] 2026-03-21 17:19:40,243 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-21 19:20:11] 2026-03-21 17:19:40,243 | INFO     | pilot state: finished 
[2026-03-21 19:20:11] 2026-03-21 17:19:40,243 | INFO     | transexitcode: 0
[2026-03-21 19:20:11] 2026-03-21 17:19:40,243 | INFO     | exeerrorcode: 0
[2026-03-21 19:20:11] 2026-03-21 17:19:40,243 | INFO     | exeerrordiag: 
[2026-03-21 19:20:11] 2026-03-21 17:19:40,243 | INFO     | exitcode: 0
[2026-03-21 19:20:11] 2026-03-21 17:19:40,243 | INFO     | exitmsg: OK
[2026-03-21 19:20:11] 2026-03-21 17:19:40,243 | INFO     | cpuconsumptiontime: 15580 s
[2026-03-21 19:20:11] 2026-03-21 17:19:40,243 | INFO     | nevents: 400
[2026-03-21 19:20:11] 2026-03-21 17:19:40,243 | INFO     | neventsw: 0
[2026-03-21 19:20:11] 2026-03-21 17:19:40,243 | INFO     | pid: 167240
[2026-03-21 19:20:11] 2026-03-21 17:19:40,243 | INFO     | pgrp: 167240
[2026-03-21 19:20:11] 2026-03-21 17:19:40,243 | INFO     | corecount: 4
[2026-03-21 19:20:11] 2026-03-21 17:19:40,243 | INFO     | event service: False
[2026-03-21 19:20:11] 2026-03-21 17:19:40,243 | INFO     | sizes: {0: 2279976, 1: 2280238, 11: 2280266, 4065: 2315305, 4066: 2315305, 4068: 2315499}
[2026-03-21 19:20:11] 2026-03-21 17:19:40,243 | INFO     | --------------------------------------------------
[2026-03-21 19:20:11] 2026-03-21 17:19:40,243 | INFO     | 
[2026-03-21 19:20:11] 2026-03-21 17:19:40,243 | INFO     | executing command: ls -lF /home/ek/BOINC/slots/0
[2026-03-21 19:20:11] 2026-03-21 17:19:40,252 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-21 19:20:11] 2026-03-21 17:19:40,252 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-21 19:20:11] 2026-03-21 17:19:40,252 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-21 19:20:11] 2026-03-21 17:19:40,252 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-21 19:20:11] 2026-03-21 17:19:40,252 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-21 19:20:11] 2026-03-21 17:19:40,252 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-21 19:20:11] 2026-03-21 17:19:40,252 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-21 19:20:11] 2026-03-21 17:19:40,252 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-21 19:20:11] 2026-03-21 17:19:40,252 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-21 19:20:11] 2026-03-21 17:19:40,252 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-21 19:20:11] 2026-03-21 17:19:40,252 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-21 19:20:11] 2026-03-21 17:19:40,252 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-21 19:20:11] 2026-03-21 17:19:40,252 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-21 19:20:11] 2026-03-21 17:19:40,252 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-21 19:20:11] 2026-03-21 17:19:40,253 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-21 19:20:11] 2026-03-21 17:19:40,253 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-21 19:20:11] 2026-03-21 17:19:40,253 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-21 19:20:11] 2026-03-21 17:19:40,253 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-21 19:20:11] 2026-03-21 17:19:40,253 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-21 19:20:11] 2026-03-21 17:19:40,253 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-21 19:20:11] 2026-03-21 17:19:40,253 | INFO     | job 7049312920 has completed (purged errors)
[2026-03-21 19:20:11] 2026-03-21 17:19:40,253 | INFO     | overall cleanup function is called
[2026-03-21 19:20:11] 2026-03-21 17:19:41,257 | INFO     | --- collectZombieJob: --- 10, [167240]
[2026-03-21 19:20:11] 2026-03-21 17:19:41,257 | INFO     | zombie collector waiting for pid 167240
[2026-03-21 19:20:11] 2026-03-21 17:19:41,257 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-21 19:20:11] 2026-03-21 17:19:41,257 | INFO     | collected zombie processes
[2026-03-21 19:20:11] 2026-03-21 17:19:41,257 | INFO     | will attempt to kill all subprocesses of pid=167240
[2026-03-21 19:20:11] 2026-03-21 17:19:41,348 | INFO     | process IDs to be killed: [167240] (in reverse order)
[2026-03-21 19:20:11] 2026-03-21 17:19:41,380 | WARNING  | found no corresponding commands to process id(s)
[2026-03-21 19:20:11] 2026-03-21 17:19:41,380 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-21 19:20:11] 2026-03-21 17:19:41,383 | INFO     | did not find any defunct processes belonging to 167240
[2026-03-21 19:20:11] 2026-03-21 17:19:41,385 | INFO     | did not find any defunct processes belonging to 167240
[2026-03-21 19:20:11] 2026-03-21 17:19:41,385 | INFO     | ready for new job
[2026-03-21 19:20:11] 2026-03-21 17:19:41,385 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-21 19:20:11] 2026-03-21 17:19:41,386 | INFO     | **************************************
[2026-03-21 19:20:11] 2026-03-21 17:19:41,386 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-21 19:20:11] 2026-03-21 17:19:41,386 | INFO     | **************************************
[2026-03-21 19:20:11] 2026-03-21 17:19:41,386 | INFO     | 
[2026-03-21 19:20:11] 2026-03-21 17:19:41,386 | INFO     | architecture information:
[2026-03-21 19:20:11] 2026-03-21 17:19:41,386 | INFO     | executing command: cat /etc/os-release
[2026-03-21 19:20:11] 2026-03-21 17:19:41,392 | INFO     | cat /etc/os-release:
[2026-03-21 19:20:11] NAME="CentOS Linux"
[2026-03-21 19:20:11] VERSION="7 (Core)"
[2026-03-21 19:20:11] ID="centos"
[2026-03-21 19:20:11] ID_LIKE="rhel fedora"
[2026-03-21 19:20:11] VERSION_ID="7"
[2026-03-21 19:20:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-21 19:20:11] ANSI_COLOR="0;31"
[2026-03-21 19:20:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-21 19:20:11] HOME_URL="https://www.centos.org/"
[2026-03-21 19:20:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-21 19:20:11] 
[2026-03-21 19:20:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-21 19:20:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-21 19:20:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-21 19:20:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-21 19:20:11] 
[2026-03-21 19:20:11] 2026-03-21 17:19:41,392 | INFO     | **************************************
[2026-03-21 19:20:11] 2026-03-21 17:19:41,895 | INFO     | executing command: df -mP /home/ek/BOINC/slots/0
[2026-03-21 19:20:11] 2026-03-21 17:19:41,902 | INFO     | sufficient remaining disk space (69866618880 B)
[2026-03-21 19:20:11] 2026-03-21 17:19:41,902 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-21 19:20:11] 2026-03-21 17:19:41,903 | INFO     | current server update state: UPDATING_FINAL
[2026-03-21 19:20:11] 2026-03-21 17:19:41,903 | INFO     | update_server=False
[2026-03-21 19:20:11] 2026-03-21 17:19:41,903 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-21 19:20:11] 2026-03-21 17:19:41,903 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-21 19:20:11] 2026-03-21 17:19:41,903 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-21 19:20:11] 2026-03-21 17:19:41,903 | INFO     | aborting loop
[2026-03-21 19:20:11] 2026-03-21 17:19:42,032 | INFO     | all data control threads have been joined
[2026-03-21 19:20:11] 2026-03-21 17:19:42,555 | INFO     | all payload control threads have been joined
[2026-03-21 19:20:11] 2026-03-21 17:19:42,907 | INFO     | [job] queue monitor thread has finished
[2026-03-21 19:20:11] 2026-03-21 17:19:42,908 | INFO     | [job] retrieve thread has finished
[2026-03-21 19:20:11] 2026-03-21 17:19:42,908 | INFO     | [job] job monitor thread has finished
[2026-03-21 19:20:11] 2026-03-21 17:19:43,009 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-21 19:20:11] 2026-03-21 17:19:43,027 | INFO     | [data] copytool_in thread has finished
[2026-03-21 19:20:11] 2026-03-21 17:19:43,037 | INFO     | [data] control thread has finished
[2026-03-21 19:20:11] 2026-03-21 17:19:43,041 | INFO     | [payload] validate_post thread has finished
[2026-03-21 19:20:11] 2026-03-21 17:19:43,522 | INFO     | all job control threads have been joined
[2026-03-21 19:20:11] 2026-03-21 17:19:43,560 | INFO     | [payload] control thread has finished
[2026-03-21 19:20:11] 2026-03-21 17:19:43,857 | INFO     | job.realtimelogging is not enabled
[2026-03-21 19:20:11] 2026-03-21 17:19:44,174 | INFO     | [payload] execute_payloads thread has finished
[2026-03-21 19:20:11] 2026-03-21 17:19:44,261 | INFO     | [job] create_data_payload thread has finished
[2026-03-21 19:20:11] 2026-03-21 17:19:44,305 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-21 19:20:11] 2026-03-21 17:19:44,356 | INFO     | [payload] failed_post thread has finished
[2026-03-21 19:20:11] 2026-03-21 17:19:44,357 | INFO     | [job] validate thread has finished
[2026-03-21 19:20:11] 2026-03-21 17:19:44,408 | INFO     | [payload] validate_pre thread has finished
[2026-03-21 19:20:11] 2026-03-21 17:19:44,524 | INFO     | [job] control thread has finished
[2026-03-21 19:20:11] 2026-03-21 17:19:44,860 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-21 19:20:11] 2026-03-21 17:19:45,014 | INFO     | [data] copytool_out thread has finished
[2026-03-21 19:20:11] 2026-03-21 17:19:45,829 | INFO     | [monitor] cgroup control has ended
[2026-03-21 19:20:11] 2026-03-21 17:19:48,306 | INFO     | [data] queue_monitor thread has finished
[2026-03-21 19:20:11] 2026-03-21 17:19:48,565 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140381837489984)>', '<ExcThread(monitor, started 140381554751232)>']
[2026-03-21 19:20:11] 2026-03-21 17:19:53,576 | INFO     | all workflow threads have been joined
[2026-03-21 19:20:11] 2026-03-21 17:19:53,576 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-21 19:20:11] 2026-03-21 17:19:53,577 | INFO     | traces error code: 0
[2026-03-21 19:20:11] 2026-03-21 17:19:53,577 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-21 19:20:11] 2026-03-21 17:20:11,767 | INFO     | PID=162411 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-21 19:20:11] 2026-03-21 17:20:11,767 | INFO     | found 0 job(s) in 20 queues
[2026-03-21 19:20:11] 2026-03-21 17:20:11,767 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-21 19:20:11] 2026-03-21 17:20:11,767 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-21 19:20:11] 2026-03-21 17:20:11,768 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-21 19:20:11] 2026-03-21 17:20:11,768 | CRITICAL | thread 'MainThread' is not alive
[2026-03-21 19:20:11] 2026-03-21 17:20:11,768 | INFO     | [monitor] control thread has ended
[2026-03-21 19:20:11] 2026-03-21 17:20:11,808 [wrapper] ==== pilot stdout END ====
[2026-03-21 19:20:11] 2026-03-21 17:20:11,810 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-21 19:20:11] 2026-03-21 17:20:11,811 [wrapper] pilotpid: 162411
[2026-03-21 19:20:11] 2026-03-21 17:20:11,812 [wrapper] Pilot exit status: 0
[2026-03-21 19:20:11] 2026-03-21 17:20:11,817 [wrapper] pandaids: 7049312920
[2026-03-21 19:20:11] 2026-03-21 17:20:11,837 [wrapper] cleanup supervisor_pilot  211669 162412
[2026-03-21 19:20:11] 2026-03-21 17:20:11,839 [wrapper] Test setup, not cleaning
[2026-03-21 19:20:11] 2026-03-21 17:20:11,840 [wrapper] apfmon messages muted
[2026-03-21 19:20:11] 2026-03-21 17:20:11,841 [wrapper] ==== wrapper stdout END ====
[2026-03-21 19:20:11] 2026-03-21 17:20:11,843 [wrapper] ==== wrapper stderr END ====
[2026-03-21 19:20:11]  *** Error codes and diagnostics ***
[2026-03-21 19:20:11]     "exeErrorCode": 0,
[2026-03-21 19:20:11]     "exeErrorDiag": "",
[2026-03-21 19:20:11]     "pilotErrorCode": 0,
[2026-03-21 19:20:11]     "pilotErrorDiag": "",
[2026-03-21 19:20:11]  *** Listing of results directory ***
[2026-03-21 19:20:11] total 411560
[2026-03-21 19:20:11] -rw-r--r-- 1 ek ek    585013 Mar 11 03:23 pilot3.tar.gz
[2026-03-21 19:20:11] -rw-r--r-- 1 ek ek      5111 Mar 11 03:24 queuedata.json
[2026-03-21 19:20:11] -rwx------ 1 ek ek     36322 Mar 11 03:24 runpilot2-wrapper.sh
[2026-03-21 19:20:11] -rw-rw-r-- 1 ek ek       100 Mar 21 18:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-21 19:20:11] -rwxr-xr-x 1 ek ek      7986 Mar 21 18:11 run_atlas
[2026-03-21 19:20:11] -rw-rw-r-- 1 ek ek       105 Mar 21 18:11 job.xml
[2026-03-21 19:20:11] -rw-r--r-- 2 ek ek 213295554 Mar 21 18:11 EVNT.48967083._000163.pool.root.1
[2026-03-21 19:20:11] drwxrwx--x 2 ek ek      4096 Mar 21 18:11 shared
[2026-03-21 19:20:11] -rw-r--r-- 2 ek ek    597519 Mar 21 18:11 input.tar.gz
[2026-03-21 19:20:11] -rw-r--r-- 2 ek ek     15845 Mar 21 18:11 start_atlas.sh
[2026-03-21 19:20:11] -rw-rw-r-- 1 ek ek         0 Mar 21 18:11 boinc_setup_complete
[2026-03-21 19:20:11] -rw-rw-r-- 1 ek ek      9842 Mar 21 18:11 init_data.xml
[2026-03-21 19:20:11] -rw-rw-r-- 1 ek ek         0 Mar 21 18:11 boinc_lockfile
[2026-03-21 19:20:11] -rw-rw-r-- 1 ek ek      2561 Mar 21 18:11 pandaJob.out
[2026-03-21 19:20:11] -rw------- 1 ek ek        50 Mar 21 18:11 setup.sh.local
[2026-03-21 19:20:11] -rw------- 1 ek ek   1010663 Mar 21 18:11 agis_schedconf.cvmfs.json
[2026-03-21 19:20:11] -rw------- 1 ek ek   1511579 Mar 21 18:11 agis_ddmendpoints.agis.ALL.json
[2026-03-21 19:20:11] -rw------- 1 ek ek       426 Mar 21 18:11 workernode_map.json
[2026-03-21 19:20:11] drwx------ 5 ek ek      4096 Mar 21 18:11 pilot3
[2026-03-21 19:20:11] -rw------- 1 ek ek 202468652 Mar 21 19:19 HITS.48967085._004065.pool.root.1
[2026-03-21 19:20:11] -rw------- 1 ek ek      1032 Mar 21 19:19 memory_monitor_summary.json
[2026-03-21 19:20:11] -rw------- 1 ek ek    260948 Mar 21 19:19 log.48967085._004065.job.log.tgz.1
[2026-03-21 19:20:11] -rw------- 1 ek ek      6328 Mar 21 19:19 heartbeat.json
[2026-03-21 19:20:11] -rw-rw-r-- 1 ek ek      8192 Mar 21 19:19 boinc_mmap_file
[2026-03-21 19:20:11] -rw-rw-r-- 1 ek ek        27 Mar 21 19:19 wrapper_checkpoint.txt
[2026-03-21 19:20:11] -rw-rw-r-- 1 ek ek       530 Mar 21 19:19 boinc_task_state.xml
[2026-03-21 19:20:11] -rw------- 1 ek ek       816 Mar 21 19:20 pilotlog.txt
[2026-03-21 19:20:11] -rw------- 1 ek ek        95 Mar 21 19:20 pilot_heartbeat.json
[2026-03-21 19:20:11] -rw------- 1 ek ek    605230 Mar 21 19:20 log.48967085._004065.job.log.1
[2026-03-21 19:20:11] -rw------- 1 ek ek       357 Mar 21 19:20 output.list
[2026-03-21 19:20:11] -rw-rw-r-- 1 ek ek       620 Mar 21 19:20 runtime_log
[2026-03-21 19:20:11] -rw------- 1 ek ek    880640 Mar 21 19:20 result.tar.gz
[2026-03-21 19:20:11] -rw------- 1 ek ek       665 Mar 21 19:20 VUtNDmtUNK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmZphLDm4XOCKm.diag
[2026-03-21 19:20:11] -rw-rw-r-- 1 ek ek      9501 Mar 21 19:20 runtime_log.err
[2026-03-21 19:20:11] -rw-rw-r-- 1 ek ek     21197 Mar 21 19:20 stderr.txt
[2026-03-21 19:20:11] HITS file was successfully produced:
[2026-03-21 19:20:11] -rw------- 1 ek ek 202468652 Mar 21 19:19 shared/HITS.pool.root.1
[2026-03-21 19:20:11]  *** Contents of shared directory: ***
[2026-03-21 19:20:11] total 407492
[2026-03-21 19:20:11] -rw-r--r-- 2 ek ek 213295554 Mar 21 18:11 ATLAS.root_0
[2026-03-21 19:20:11] -rw-r--r-- 2 ek ek    597519 Mar 21 18:11 input.tar.gz
[2026-03-21 19:20:11] -rw-r--r-- 2 ek ek     15845 Mar 21 18:11 start_atlas.sh
[2026-03-21 19:20:11] -rw------- 1 ek ek 202468652 Mar 21 19:19 HITS.pool.root.1
[2026-03-21 19:20:11] -rw------- 1 ek ek    880640 Mar 21 19:20 result.tar.gz
19:20:13 (158575): run_atlas exited; CPU time 15616.172930
19:20:13 (158575): called boinc_finish(0)

</stderr_txt>
]]>

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