Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:15:18 (135782): wrapper (7.7.26015): starting
19:15:18 (135782): wrapper: running run_atlas (--nthreads 8)
[2026-03-19 19:15:18] Arguments: --nthreads 8
[2026-03-19 19:15:18] Threads: 8
[2026-03-19 19:15:18] Checking for CVMFS
[2026-03-19 19:15:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-19 19:15:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-19 19:15:19] Running cvmfs_config stat atlas.cern.ch
[2026-03-19 19:15:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-19 19:15:20] 2.13.3.0 2252556 62167 440184 157476 2 225 27744778 32935936 37230 16776704 1 196194516 99.466 262993357 14412 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-19 19:15:20] CVMFS is ok
[2026-03-19 19:15:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-19 19:15:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-19 19:15:20] Further information can be found at the LHC@home message board.
[2026-03-19 19:15:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-19 19:15:20] Checking for apptainer binary...
[2026-03-19 19:15:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-19 19:15:20] Running /usr/bin/apptainer --version
[2026-03-19 19:15:20] apptainer version 1.4.5-2.el9
[2026-03-19 19:15:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-19 19:15:21] c6-12-27-3.aglt2.org
[2026-03-19 19:15:21] apptainer works
[2026-03-19 19:15:21] Set ATHENA_PROC_NUMBER=8
[2026-03-19 19:15:21] Set ATHENA_CORE_NUMBER=8
[2026-03-19 19:15:21] Starting ATLAS job with PandaID=7050078822
[2026-03-19 19:15:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:11:38 (828590): wrapper (7.7.26015): starting
23:11:38 (828590): wrapper: running run_atlas (--nthreads 9)
[2026-03-19 23:11:38] Arguments: --nthreads 9
[2026-03-19 23:11:38] Threads: 9
[2026-03-19 23:11:38] This job has been restarted, cleaning up previous attempt
[2026-03-19 23:11:38] Checking for CVMFS
[2026-03-19 23:11:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-19 23:11:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-19 23:11:39] Running cvmfs_config stat atlas.cern.ch
[2026-03-19 23:11:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-19 23:11:40] 2.13.3.0 2252556 62403 449468 157481 2 440 29565308 32935937 37286 16776704 1 197095245 99.468 263288107 14419 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-19 23:11:40] CVMFS is ok
[2026-03-19 23:11:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-19 23:11:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-19 23:11:40] Further information can be found at the LHC@home message board.
[2026-03-19 23:11:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-19 23:11:40] Checking for apptainer binary...
[2026-03-19 23:11:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-19 23:11:40] Running /usr/bin/apptainer --version
[2026-03-19 23:11:40] apptainer version 1.4.5-2.el9
[2026-03-19 23:11:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-19 23:11:41] c6-12-27-3.aglt2.org
[2026-03-19 23:11:41] apptainer works
[2026-03-19 23:11:41] Set ATHENA_PROC_NUMBER=9
[2026-03-19 23:11:41] Set ATHENA_CORE_NUMBER=9
[2026-03-19 23:11:41] Starting ATLAS job with PandaID=7050078822
[2026-03-19 23:11:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-20 02:42:06]  *** The last 200 lines of the pilot log: ***
[2026-03-20 02:42:06] 2026-03-20 06:41:15,443 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/1/workernode_map.json
[2026-03-20 02:42:06] 2026-03-20 06:41:15,443 | INFO     | this job has now completed (state=finished)
[2026-03-20 02:42:06] 2026-03-20 06:41:15,443 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-20 02:42:06] 2026-03-20 06:41:15,443 | INFO     | log transfer has been attempted: DONE
[2026-03-20 02:42:06] 2026-03-20 06:41:15,444 | INFO     | job 7050078822 has finished - writing final server update
[2026-03-20 02:42:06] 2026-03-20 06:41:15,478 | INFO     | total number of processed events: 400 (read)
[2026-03-20 02:42:06] 2026-03-20 06:41:15,533 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-7050078822/memory_monitor_summary.json (trf name=prmon)
[2026-03-20 02:42:06] 2026-03-20 06:41:15,534 | INFO     | extracted standard info from prmon json
[2026-03-20 02:42:06] 2026-03-20 06:41:15,534 | INFO     | extracted standard memory fields from prmon json
[2026-03-20 02:42:06] 2026-03-20 06:41:15,534 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-20 02:42:06] 2026-03-20 06:41:15,535 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-20 02:42:06] 2026-03-20 06:41:15,535 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-20 02:42:06] 2026-03-20 06:41:15,544 | INFO     | fitting pss+swap vs Time
[2026-03-20 02:42:06] 2026-03-20 06:41:15,545 | INFO     | sum of square deviations: 2632463994.602953
[2026-03-20 02:42:06] 2026-03-20 06:41:15,546 | INFO     | sum of deviations: -62716347137.75
[2026-03-20 02:42:06] 2026-03-20 06:41:15,546 | INFO     | mean x: 1773982621.0441177
[2026-03-20 02:42:06] 2026-03-20 06:41:15,546 | INFO     | mean y: 2650293.0833333335
[2026-03-20 02:42:06] 2026-03-20 06:41:15,546 | INFO     | intersect: 42266366000.43499
[2026-03-20 02:42:06] 2026-03-20 06:41:15,547 | INFO     | chi2: 3.4973819110835045
[2026-03-20 02:42:06] 2026-03-20 06:41:15,547 | INFO     | sum of square deviations: 2443638493.085425
[2026-03-20 02:42:06] 2026-03-20 06:41:15,549 | INFO     | sum of deviations: -46918349921.76382
[2026-03-20 02:42:06] 2026-03-20 06:41:15,549 | INFO     | mean x: 1773982468.5577888
[2026-03-20 02:42:06] 2026-03-20 06:41:15,549 | INFO     | mean y: 2662840.718592965
[2026-03-20 02:42:06] 2026-03-20 06:41:15,549 | INFO     | intersect: 34063482577.510597
[2026-03-20 02:42:06] 2026-03-20 06:41:15,549 | INFO     | chi2: 2.8284615774843145
[2026-03-20 02:42:06] 2026-03-20 06:41:15,549 | INFO     | current chi2=2.8284615774843145 (change=19.12631650204754 %)
[2026-03-20 02:42:06] 2026-03-20 06:41:15,549 | INFO     | right removable region: 198
[2026-03-20 02:42:06] 2026-03-20 06:41:15,550 | INFO     | sum of square deviations: 2443570783.085425
[2026-03-20 02:42:06] 2026-03-20 06:41:15,551 | INFO     | sum of deviations: -109931779234.10558
[2026-03-20 02:42:06] 2026-03-20 06:41:15,551 | INFO     | mean x: 1773982773.5577888
[2026-03-20 02:42:06] 2026-03-20 06:41:15,551 | INFO     | mean y: 2688131.487437186
[2026-03-20 02:42:06] 2026-03-20 06:41:15,551 | INFO     | intersect: 79810927769.06357
[2026-03-20 02:42:06] 2026-03-20 06:41:15,552 | INFO     | chi2: 1.1263328113902205
[2026-03-20 02:42:06] 2026-03-20 06:41:15,552 | INFO     | current chi2=1.1263328113902205 (change=67.79497235286844 %)
[2026-03-20 02:42:06] 2026-03-20 06:41:15,552 | INFO     | sum of square deviations: 2263933558.9896894
[2026-03-20 02:42:06] 2026-03-20 06:41:15,554 | INFO     | sum of deviations: -110075815501.80411
[2026-03-20 02:42:06] 2026-03-20 06:41:15,554 | INFO     | mean x: 1773982926.072165
[2026-03-20 02:42:06] 2026-03-20 06:41:15,554 | INFO     | mean y: 2688184.1288659796
[2026-03-20 02:42:06] 2026-03-20 06:41:15,554 | INFO     | intersect: 86256375487.92644
[2026-03-20 02:42:06] 2026-03-20 06:41:15,554 | INFO     | chi2: 1.06628811001157
[2026-03-20 02:42:06] 2026-03-20 06:41:15,554 | INFO     | current chi2=1.06628811001157 (change=5.330991050907764 %)
[2026-03-20 02:42:06] 2026-03-20 06:41:15,554 | INFO     | left removable region: 20
[2026-03-20 02:42:06] 2026-03-20 06:41:15,555 | INFO     | sum of square deviations: 1748736216.561795
[2026-03-20 02:42:06] 2026-03-20 06:41:15,556 | INFO     | sum of deviations: -78435336399.19098
[2026-03-20 02:42:06] 2026-03-20 06:41:15,558 | INFO     | mean x: 1773983048.0898876
[2026-03-20 02:42:06] 2026-03-20 06:41:15,559 | INFO     | mean y: 2688529.449438202
[2026-03-20 02:42:06] 2026-03-20 06:41:15,559 | INFO     | intersect: 79570410536.69571
[2026-03-20 02:42:06] 2026-03-20 06:41:15,559 | INFO     | chi2: 0.3520107789377293
[2026-03-20 02:42:06] 2026-03-20 06:41:15,559 | INFO     | current memory leak: -44.85 B/s (using 178 data points, chi2=0.35)
[2026-03-20 02:42:06] 2026-03-20 06:41:15,560 | INFO     | could have reported an average CPU frequency of 2625 MHz (10 samples)
[2026-03-20 02:42:06] 2026-03-20 06:41:15,560 | INFO     | ..............................
[2026-03-20 02:42:06] 2026-03-20 06:41:15,560 | INFO     | . Timing measurements:
[2026-03-20 02:42:06] 2026-03-20 06:41:15,560 | INFO     | . get job = 0 s
[2026-03-20 02:42:06] 2026-03-20 06:41:15,560 | INFO     | . initial setup = 4 s
[2026-03-20 02:42:06] 2026-03-20 06:41:15,560 | INFO     | . payload setup = 44 s
[2026-03-20 02:42:06] 2026-03-20 06:41:15,560 | INFO     | . stage-in = 0 s
[2026-03-20 02:42:06] 2026-03-20 06:41:15,560 | INFO     | . payload execution = 12455 s
[2026-03-20 02:42:06] 2026-03-20 06:41:15,560 | INFO     | . stage-out = 7 s
[2026-03-20 02:42:06] 2026-03-20 06:41:15,560 | INFO     | . log creation = 1 s
[2026-03-20 02:42:06] 2026-03-20 06:41:15,560 | INFO     | ..............................
[2026-03-20 02:42:06] 2026-03-20 06:41:15,581 | INFO     | number of running child processes to parent process 845830: 1
[2026-03-20 02:42:06] 2026-03-20 06:41:15,581 | INFO     | maximum number of monitored processes: 6
[2026-03-20 02:42:06] 2026-03-20 06:41:15,581 | INFO     | aborting job monitoring since job object (job id=7050078822) has expired
[2026-03-20 02:42:06] 2026-03-20 06:41:15,854 | INFO     | 
[2026-03-20 02:42:06] 2026-03-20 06:41:15,854 | INFO     | job summary report
[2026-03-20 02:42:06] 2026-03-20 06:41:15,854 | INFO     | --------------------------------------------------
[2026-03-20 02:42:06] 2026-03-20 06:41:15,854 | INFO     | PanDA job id: 7050078822
[2026-03-20 02:42:06] 2026-03-20 06:41:15,854 | INFO     | task id: 48967094
[2026-03-20 02:42:06] 2026-03-20 06:41:15,854 | INFO     | errors: (none)
[2026-03-20 02:42:06] 2026-03-20 06:41:15,854 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-20 02:42:06] 2026-03-20 06:41:15,854 | INFO     | pilot state: finished 
[2026-03-20 02:42:06] 2026-03-20 06:41:15,854 | INFO     | transexitcode: 0
[2026-03-20 02:42:06] 2026-03-20 06:41:15,854 | INFO     | exeerrorcode: 0
[2026-03-20 02:42:06] 2026-03-20 06:41:15,855 | INFO     | exeerrordiag: 
[2026-03-20 02:42:06] 2026-03-20 06:41:15,859 | INFO     | exitcode: 0
[2026-03-20 02:42:06] 2026-03-20 06:41:15,859 | INFO     | exitmsg: OK
[2026-03-20 02:42:06] 2026-03-20 06:41:15,859 | INFO     | cpuconsumptiontime: 54468 s
[2026-03-20 02:42:06] 2026-03-20 06:41:15,859 | INFO     | nevents: 400
[2026-03-20 02:42:06] 2026-03-20 06:41:15,859 | INFO     | neventsw: 0
[2026-03-20 02:42:06] 2026-03-20 06:41:15,859 | INFO     | pid: 845830
[2026-03-20 02:42:06] 2026-03-20 06:41:15,859 | INFO     | pgrp: 845830
[2026-03-20 02:42:06] 2026-03-20 06:41:15,859 | INFO     | corecount: 9
[2026-03-20 02:42:06] 2026-03-20 06:41:15,859 | INFO     | event service: False
[2026-03-20 02:42:06] 2026-03-20 06:41:15,860 | INFO     | sizes: {0: 2279791, 1: 2279819, 2: 2280280, 3: 2280280, 12504: 2309796, 12512: 2318794, 12514: 2318978, 12515: 2319172}
[2026-03-20 02:42:06] 2026-03-20 06:41:15,860 | INFO     | --------------------------------------------------
[2026-03-20 02:42:06] 2026-03-20 06:41:15,860 | INFO     | 
[2026-03-20 02:42:06] 2026-03-20 06:41:15,860 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-03-20 02:42:06] 2026-03-20 06:41:15,996 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-20 02:42:06] 2026-03-20 06:41:15,996 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-20 02:42:06] 2026-03-20 06:41:16,002 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-20 02:42:06] 2026-03-20 06:41:16,002 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-20 02:42:06] 2026-03-20 06:41:16,002 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-20 02:42:06] 2026-03-20 06:41:16,002 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-20 02:42:06] 2026-03-20 06:41:16,002 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-20 02:42:06] 2026-03-20 06:41:16,002 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-20 02:42:06] 2026-03-20 06:41:16,002 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-20 02:42:06] 2026-03-20 06:41:16,003 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-20 02:42:06] 2026-03-20 06:41:16,003 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-20 02:42:06] 2026-03-20 06:41:16,003 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-20 02:42:06] 2026-03-20 06:41:16,003 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-20 02:42:06] 2026-03-20 06:41:16,012 | INFO     | PID=837287 has CPU usage=17.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-20 02:42:06] 2026-03-20 06:41:16,028 | INFO     | .. there are 63 such processes running
[2026-03-20 02:42:06] 2026-03-20 06:41:16,024 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-20 02:42:06] 2026-03-20 06:41:16,028 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-20 02:42:06] 2026-03-20 06:41:16,028 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-20 02:42:06] 2026-03-20 06:41:16,028 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-20 02:42:06] 2026-03-20 06:41:16,028 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-20 02:42:06] 2026-03-20 06:41:16,029 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-20 02:42:06] 2026-03-20 06:41:16,029 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-20 02:42:06] 2026-03-20 06:41:16,029 | INFO     | job 7050078822 has completed (purged errors)
[2026-03-20 02:42:06] 2026-03-20 06:41:16,029 | INFO     | overall cleanup function is called
[2026-03-20 02:42:06] 2026-03-20 06:41:17,053 | INFO     | --- collectZombieJob: --- 10, [845830]
[2026-03-20 02:42:06] 2026-03-20 06:41:17,053 | INFO     | zombie collector waiting for pid 845830
[2026-03-20 02:42:06] 2026-03-20 06:41:17,053 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-20 02:42:06] 2026-03-20 06:41:17,053 | INFO     | collected zombie processes
[2026-03-20 02:42:06] 2026-03-20 06:41:17,053 | INFO     | will attempt to kill all subprocesses of pid=845830
[2026-03-20 02:42:06] 2026-03-20 06:41:18,750 | INFO     | process IDs to be killed: [845830] (in reverse order)
[2026-03-20 02:42:06] 2026-03-20 06:41:19,670 | WARNING  | found no corresponding commands to process id(s)
[2026-03-20 02:42:06] 2026-03-20 06:41:19,670 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-20 02:42:06] 2026-03-20 06:41:19,784 | INFO     | did not find any defunct processes belonging to 845830
[2026-03-20 02:42:06] 2026-03-20 06:41:19,963 | INFO     | did not find any defunct processes belonging to 845830
[2026-03-20 02:42:06] 2026-03-20 06:41:19,964 | INFO     | ready for new job
[2026-03-20 02:42:06] 2026-03-20 06:41:19,964 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-20 02:42:06] 2026-03-20 06:41:19,990 | INFO     | **************************************
[2026-03-20 02:42:06] 2026-03-20 06:41:19,990 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-20 02:42:06] 2026-03-20 06:41:19,990 | INFO     | **************************************
[2026-03-20 02:42:06] 2026-03-20 06:41:19,991 | INFO     | 
[2026-03-20 02:42:06] 2026-03-20 06:41:19,997 | INFO     | architecture information:
[2026-03-20 02:42:06] 2026-03-20 06:41:19,997 | INFO     | executing command: cat /etc/os-release
[2026-03-20 02:42:06] 2026-03-20 06:41:20,077 | INFO     | cat /etc/os-release:
[2026-03-20 02:42:06] NAME="CentOS Linux"
[2026-03-20 02:42:06] VERSION="7 (Core)"
[2026-03-20 02:42:06] ID="centos"
[2026-03-20 02:42:06] ID_LIKE="rhel fedora"
[2026-03-20 02:42:06] VERSION_ID="7"
[2026-03-20 02:42:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-20 02:42:06] ANSI_COLOR="0;31"
[2026-03-20 02:42:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-20 02:42:06] HOME_URL="https://www.centos.org/"
[2026-03-20 02:42:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-20 02:42:06] 
[2026-03-20 02:42:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-20 02:42:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-20 02:42:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-20 02:42:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-20 02:42:06] 
[2026-03-20 02:42:06] 2026-03-20 06:41:20,077 | INFO     | **************************************
[2026-03-20 02:42:06] 2026-03-20 06:41:20,580 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-03-20 02:42:06] 2026-03-20 06:41:20,644 | INFO     | sufficient remaining disk space (94829019136 B)
[2026-03-20 02:42:06] 2026-03-20 06:41:20,645 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-20 02:42:06] 2026-03-20 06:41:20,645 | INFO     | current server update state: UPDATING_FINAL
[2026-03-20 02:42:06] 2026-03-20 06:41:20,645 | INFO     | update_server=False
[2026-03-20 02:42:06] 2026-03-20 06:41:20,645 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-20 02:42:06] 2026-03-20 06:41:20,800 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-20 02:42:06] 2026-03-20 06:41:21,101 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-20 02:42:06] 2026-03-20 06:41:21,222 | INFO     | all payload control threads have been joined
[2026-03-20 02:42:06] 2026-03-20 06:41:21,494 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-20 02:42:06] 2026-03-20 06:41:21,517 | INFO     | all data control threads have been joined
[2026-03-20 02:42:06] 2026-03-20 06:41:21,614 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-20 02:42:06] 2026-03-20 06:41:21,614 | INFO     | aborting loop
[2026-03-20 02:42:06] 2026-03-20 06:41:21,651 | INFO     | [job] retrieve thread has finished
[2026-03-20 02:42:06] 2026-03-20 06:41:21,682 | INFO     | [payload] execute_payloads thread has finished
[2026-03-20 02:42:06] 2026-03-20 06:41:21,806 | INFO     | [job] queue monitor thread has finished
[2026-03-20 02:42:06] 2026-03-20 06:41:21,859 | INFO     | [job] create_data_payload thread has finished
[2026-03-20 02:42:06] 2026-03-20 06:41:22,004 | INFO     | [data] copytool_in thread has finished
[2026-03-20 02:42:06] 2026-03-20 06:41:22,228 | INFO     | [payload] control thread has finished
[2026-03-20 02:42:06] 2026-03-20 06:41:22,314 | INFO     | [job] validate thread has finished
[2026-03-20 02:42:06] 2026-03-20 06:41:22,318 | INFO     | all job control threads have been joined
[2026-03-20 02:42:06] 2026-03-20 06:41:22,378 | INFO     | [payload] validate_pre thread has finished
[2026-03-20 02:42:06] 2026-03-20 06:41:22,523 | INFO     | [data] control thread has finished
[2026-03-20 02:42:06] 2026-03-20 06:41:22,620 | INFO     | [job] job monitor thread has finished
[2026-03-20 02:42:06] 2026-03-20 06:41:22,807 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-20 02:42:06] 2026-03-20 06:41:23,108 | INFO     | [data] copytool_out thread has finished
[2026-03-20 02:42:06] 2026-03-20 06:41:23,120 | INFO     | [payload] failed_post thread has finished
[2026-03-20 02:42:06] 2026-03-20 06:41:23,120 | INFO     | [payload] validate_post thread has finished
[2026-03-20 02:42:06] 2026-03-20 06:41:23,324 | INFO     | [job] control thread has finished
[2026-03-20 02:42:06] 2026-03-20 06:41:25,503 | INFO     | [data] queue_monitor thread has finished
[2026-03-20 02:42:06] 2026-03-20 06:41:49,337 | INFO     | PID=837287 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-20 02:42:06] 2026-03-20 06:41:49,338 | INFO     | .. there are 63 such processes running
[2026-03-20 02:42:06] 2026-03-20 06:41:49,339 | INFO     | found 0 job(s) in 20 queues
[2026-03-20 02:42:06] 2026-03-20 06:41:49,339 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-20 02:42:06] 2026-03-20 06:41:49,339 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-20 02:42:06] 2026-03-20 06:41:59,107 | INFO     | [monitor] cgroup control has ended
[2026-03-20 02:42:06] 2026-03-20 06:42:00,179 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140649232471872)>', '<ExcThread(monitor, started 140648225171200)>']
[2026-03-20 02:42:06] 2026-03-20 06:42:00,408 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-20 02:42:06] 2026-03-20 06:42:00,408 | INFO     | [monitor] control thread has ended
[2026-03-20 02:42:06] 2026-03-20 06:42:05,208 | INFO     | all workflow threads have been joined
[2026-03-20 02:42:06] 2026-03-20 06:42:05,208 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-20 02:42:06] 2026-03-20 06:42:05,208 | INFO     | traces error code: 0
[2026-03-20 02:42:06] 2026-03-20 06:42:05,208 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-20 02:42:06] 2026-03-20 06:42:05,806 [wrapper] ==== pilot stdout END ====
[2026-03-20 02:42:06] 2026-03-20 06:42:05,825 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-20 02:42:06] 2026-03-20 06:42:05,845 [wrapper] pilotpid: 837287
[2026-03-20 02:42:06] 2026-03-20 06:42:05,877 [wrapper] Pilot exit status: 0
[2026-03-20 02:42:06] 2026-03-20 06:42:05,956 [wrapper] pandaids: 7050078822 7050078822
[2026-03-20 02:42:06] 2026-03-20 06:42:06,435 [wrapper] cleanup supervisor_pilot 1696971 837288
[2026-03-20 02:42:06] 2026-03-20 06:42:06,443 [wrapper] Test setup, not cleaning
[2026-03-20 02:42:06] 2026-03-20 06:42:06,450 [wrapper] apfmon messages muted
[2026-03-20 02:42:06] 2026-03-20 06:42:06,453 [wrapper] ==== wrapper stdout END ====
[2026-03-20 02:42:06] 2026-03-20 06:42:06,456 [wrapper] ==== wrapper stderr END ====
[2026-03-20 02:42:06]  *** Error codes and diagnostics ***
[2026-03-20 02:42:06]     "exeErrorCode": 0,
[2026-03-20 02:42:06]     "exeErrorDiag": "",
[2026-03-20 02:42:06]     "pilotErrorCode": 0,
[2026-03-20 02:42:06]     "pilotErrorDiag": "",
[2026-03-20 02:42:06]  *** Listing of results directory ***
[2026-03-20 02:42:06] total 634688
[2026-03-20 02:42:06] drwx------. 5 boincer umatlas      4096 Mar 10 12:00 pilot3
[2026-03-20 02:42:06] -rw-r--r--. 1 boincer umatlas    585013 Mar 11 15:14 pilot3.tar.gz
[2026-03-20 02:42:06] -rw-r--r--. 1 boincer umatlas      5111 Mar 11 15:14 queuedata.json
[2026-03-20 02:42:06] -rwx------. 1 boincer umatlas     36322 Mar 11 15:14 runpilot2-wrapper.sh
[2026-03-20 02:42:06] -rw-r--r--. 1 boincer umatlas       100 Mar 19 19:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-20 02:42:06] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 19 19:15 run_atlas
[2026-03-20 02:42:06] -rw-r--r--. 1 boincer umatlas       105 Mar 19 19:15 job.xml
[2026-03-20 02:42:06] -rw-r--r--. 3 boincer umatlas 218561780 Mar 19 19:15 EVNT.48967092._000170.pool.root.1
[2026-03-20 02:42:06] -rw-r--r--. 3 boincer umatlas 218561780 Mar 19 19:15 ATLAS.root_0
[2026-03-20 02:42:06] -rw-r--r--. 2 boincer umatlas     15845 Mar 19 19:15 start_atlas.sh
[2026-03-20 02:42:06] drwxrwx--x. 2 boincer umatlas      4096 Mar 19 19:15 shared
[2026-03-20 02:42:06] -rw-r--r--. 2 boincer umatlas    597533 Mar 19 19:15 input.tar.gz
[2026-03-20 02:42:06] -rw-r--r--. 1 boincer umatlas         0 Mar 19 19:15 boinc_lockfile
[2026-03-20 02:42:06] -rw-r--r--. 1 boincer umatlas      2597 Mar 19 23:11 pandaJob.out
[2026-03-20 02:42:06] -rw-------. 1 boincer umatlas        57 Mar 19 23:11 setup.sh.local
[2026-03-20 02:42:06] -rw-------. 1 boincer umatlas   1010740 Mar 19 23:12 agis_schedconf.cvmfs.json
[2026-03-20 02:42:06] -rw-------. 1 boincer umatlas       444 Mar 19 23:12 workernode_map.json
[2026-03-20 02:42:06] -rw-r--r--. 1 boincer umatlas      6879 Mar 20 02:36 init_data.xml
[2026-03-20 02:42:06] -rw-------. 1 boincer umatlas 204927186 Mar 20 02:39 HITS.48967094._003776.pool.root.1
[2026-03-20 02:42:06] -rw-r--r--. 1 boincer umatlas       531 Mar 20 02:39 boinc_task_state.xml
[2026-03-20 02:42:06] -rw-------. 1 boincer umatlas      1055 Mar 20 02:41 memory_monitor_summary.json
[2026-03-20 02:42:06] -rw-------. 1 boincer umatlas   1511579 Mar 20 02:41 agis_ddmendpoints.agis.ALL.json
[2026-03-20 02:42:06] -rw-------. 1 boincer umatlas    450160 Mar 20 02:41 log.48967094._003776.job.log.tgz.1
[2026-03-20 02:42:06] -rw-------. 1 boincer umatlas      6428 Mar 20 02:41 heartbeat.json
[2026-03-20 02:42:06] -rw-r--r--. 1 boincer umatlas      8192 Mar 20 02:41 boinc_mmap_file
[2026-03-20 02:42:06] -rw-r--r--. 1 boincer umatlas        28 Mar 20 02:41 wrapper_checkpoint.txt
[2026-03-20 02:42:06] -rw-------. 1 boincer umatlas        96 Mar 20 02:41 pilot_heartbeat.json
[2026-03-20 02:42:06] -rw-------. 1 boincer umatlas      4819 Mar 20 02:42 pilotlog.txt
[2026-03-20 02:42:06] -rw-------. 1 boincer umatlas   1508451 Mar 20 02:42 log.48967094._003776.job.log.1
[2026-03-20 02:42:06] -rw-------. 1 boincer umatlas       357 Mar 20 02:42 output.list
[2026-03-20 02:42:06] -rw-r--r--. 1 boincer umatlas       620 Mar 20 02:42 runtime_log
[2026-03-20 02:42:06] -rw-------. 1 boincer umatlas   1976320 Mar 20 02:42 result.tar.gz
[2026-03-20 02:42:06] -rw-r--r--. 1 boincer umatlas      9437 Mar 20 02:42 runtime_log.err
[2026-03-20 02:42:06] -rw-------. 1 boincer umatlas       789 Mar 20 02:42 ajaKDmsBeK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmKjkLDmeHGV3m.diag
[2026-03-20 02:42:06] -rw-r--r--. 1 boincer umatlas     23549 Mar 20 02:42 stderr.txt
[2026-03-20 02:42:07] HITS file was successfully produced:
[2026-03-20 02:42:07] -rw-------. 1 boincer umatlas 204927186 Mar 20 02:39 shared/HITS.pool.root.1
[2026-03-20 02:42:07]  *** Contents of shared directory: ***
[2026-03-20 02:42:07] total 416108
[2026-03-20 02:42:07] -rw-r--r--. 3 boincer umatlas 218561780 Mar 19 19:15 ATLAS.root_0
[2026-03-20 02:42:07] -rw-r--r--. 2 boincer umatlas     15845 Mar 19 19:15 start_atlas.sh
[2026-03-20 02:42:07] -rw-r--r--. 2 boincer umatlas    597533 Mar 19 19:15 input.tar.gz
[2026-03-20 02:42:07] -rw-------. 1 boincer umatlas 204927186 Mar 20 02:39 HITS.pool.root.1
[2026-03-20 02:42:07] -rw-------. 1 boincer umatlas   1976320 Mar 20 02:42 result.tar.gz
02:42:08 (828590): run_atlas exited; CPU time 55236.006766
02:42:08 (828590): called boinc_finish(0)

</stderr_txt>
]]>

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