Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:22:25 (9039): wrapper (7.7.26015): starting
06:22:25 (9039): wrapper: running run_atlas (--nthreads 8)
[2026-03-20 06:22:25] Arguments: --nthreads 8
[2026-03-20 06:22:25] Threads: 8
[2026-03-20 06:22:25] Checking for CVMFS
[2026-03-20 06:22:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-20 06:22:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-20 06:22:27] Running cvmfs_config stat atlas.cern.ch
[2026-03-20 06:22:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-20 06:22:29] 2.11.2.0 29161 135771 139588 157486 3 53 18152110 25165824 4390 130560 155 45508351 99.814 33516951 1166 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-20 06:22:29] CVMFS is ok
[2026-03-20 06:22:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-20 06:22:29] Checking for apptainer binary...
[2026-03-20 06:22:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-20 06:22:29] Running /usr/bin/apptainer --version
[2026-03-20 06:22:29] apptainer version 1.3.2-1.el7
[2026-03-20 06:22:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-20 06:22:31] cg-vwn454.simple-grid.lan
[2026-03-20 06:22:31] apptainer works
[2026-03-20 06:22:31] Set ATHENA_PROC_NUMBER=8
[2026-03-20 06:22:31] Set ATHENA_CORE_NUMBER=8
[2026-03-20 06:22:32] Starting ATLAS job with PandaID=7050074031
[2026-03-20 06:22:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-20 14:18:20]  *** The last 200 lines of the pilot log: ***
[2026-03-20 14:18:20] 2026-03-20 13:17:07,551 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-7050074031/memory_monitor_summary.json (trf name=prmon)
[2026-03-20 14:18:20] 2026-03-20 13:17:07,552 | INFO     | extracted standard info from prmon json
[2026-03-20 14:18:20] 2026-03-20 13:17:07,552 | INFO     | extracted standard memory fields from prmon json
[2026-03-20 14:18:20] 2026-03-20 13:17:07,552 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-20 14:18:20] 2026-03-20 13:17:07,552 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-20 14:18:20] 2026-03-20 13:17:07,552 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-20 14:18:20] 2026-03-20 13:17:07,560 | INFO     | fitting pss+swap vs Time
[2026-03-20 14:18:20] 2026-03-20 13:17:07,561 | INFO     | sum of square deviations: 29595449788.0
[2026-03-20 14:18:20] 2026-03-20 13:17:07,566 | INFO     | sum of deviations: 116682501961.0
[2026-03-20 14:18:20] 2026-03-20 13:17:07,566 | INFO     | mean x: 1773998652.0
[2026-03-20 14:18:20] 2026-03-20 13:17:07,566 | INFO     | mean y: 2513346.43107221
[2026-03-20 14:18:20] 2026-03-20 13:17:07,566 | INFO     | intersect: -6991622666.826309
[2026-03-20 14:18:20] 2026-03-20 13:17:07,569 | INFO     | chi2: 4.970105426110009
[2026-03-20 14:18:20] 2026-03-20 13:17:07,570 | INFO     | sum of square deviations: 28634631773.0
[2026-03-20 14:18:20] 2026-03-20 13:17:07,575 | INFO     | sum of deviations: 115191366294.00003
[2026-03-20 14:18:20] 2026-03-20 13:17:07,575 | INFO     | mean x: 1773998499.5
[2026-03-20 14:18:20] 2026-03-20 13:17:07,575 | INFO     | mean y: 2513109.7123893807
[2026-03-20 14:18:20] 2026-03-20 13:17:07,575 | INFO     | intersect: -7133926170.557833
[2026-03-20 14:18:20] 2026-03-20 13:17:07,576 | INFO     | chi2: 4.97201793860135
[2026-03-20 14:18:20] 2026-03-20 13:17:07,576 | INFO     | current chi2=4.97201793860135 (change=-0.03848032038301681 %)
[2026-03-20 14:18:20] 2026-03-20 13:17:07,576 | INFO     | right removable region: 451
[2026-03-20 14:18:20] 2026-03-20 13:17:07,577 | INFO     | sum of square deviations: 28634631773.0
[2026-03-20 14:18:20] 2026-03-20 13:17:07,586 | INFO     | sum of deviations: -40651207578.99996
[2026-03-20 14:18:20] 2026-03-20 13:17:07,586 | INFO     | mean x: 1773998804.5
[2026-03-20 14:18:20] 2026-03-20 13:17:07,586 | INFO     | mean y: 2538303.902654867
[2026-03-20 14:18:20] 2026-03-20 13:17:07,587 | INFO     | intersect: 2520998964.3475957
[2026-03-20 14:18:20] 2026-03-20 13:17:07,587 | INFO     | chi2: 0.6852896386249225
[2026-03-20 14:18:20] 2026-03-20 13:17:07,587 | INFO     | current chi2=0.6852896386249225 (change=86.21176856682327 %)
[2026-03-20 14:18:20] 2026-03-20 13:17:07,588 | INFO     | sum of square deviations: 27694837408.0
[2026-03-20 14:18:20] 2026-03-20 13:17:07,593 | INFO     | sum of deviations: -77399947782.99998
[2026-03-20 14:18:20] 2026-03-20 13:17:07,593 | INFO     | mean x: 1773998957.0
[2026-03-20 14:18:20] 2026-03-20 13:17:07,593 | INFO     | mean y: 2544235.7718120804
[2026-03-20 14:18:20] 2026-03-20 13:17:07,593 | INFO     | intersect: 4960415069.822402
[2026-03-20 14:18:20] 2026-03-20 13:17:07,594 | INFO     | chi2: 0.24205083691525467
[2026-03-20 14:18:20] 2026-03-20 13:17:07,594 | INFO     | current chi2=0.24205083691525467 (change=64.67904616200748 %)
[2026-03-20 14:18:20] 2026-03-20 13:17:07,595 | INFO     | sum of square deviations: 26775834130.5
[2026-03-20 14:18:20] 2026-03-20 13:17:07,600 | INFO     | sum of deviations: -74255475893.49997
[2026-03-20 14:18:20] 2026-03-20 13:17:07,600 | INFO     | mean x: 1773999109.5
[2026-03-20 14:18:20] 2026-03-20 13:17:07,600 | INFO     | mean y: 2543705.165158371
[2026-03-20 14:18:20] 2026-03-20 13:17:07,600 | INFO     | intersect: 4922246578.604934
[2026-03-20 14:18:20] 2026-03-20 13:17:07,601 | INFO     | chi2: 0.22765931738767275
[2026-03-20 14:18:20] 2026-03-20 13:17:07,601 | INFO     | current chi2=0.22765931738767275 (change=5.945659891529556 %)
[2026-03-20 14:18:20] 2026-03-20 13:17:07,601 | INFO     | left removable region: 30
[2026-03-20 14:18:20] 2026-03-20 13:17:07,602 | INFO     | sum of square deviations: 23137810570.0
[2026-03-20 14:18:20] 2026-03-20 13:17:07,606 | INFO     | sum of deviations: -31277914273.000008
[2026-03-20 14:18:20] 2026-03-20 13:17:07,606 | INFO     | mean x: 1773999384.0
[2026-03-20 14:18:20] 2026-03-20 13:17:07,610 | INFO     | mean y: 2536274.624703088
[2026-03-20 14:18:20] 2026-03-20 13:17:07,610 | INFO     | intersect: 2400645658.623641
[2026-03-20 14:18:20] 2026-03-20 13:17:07,610 | INFO     | chi2: 0.1488858740933989
[2026-03-20 14:18:20] 2026-03-20 13:17:07,611 | INFO     | current memory leak: -1.35 B/s (using 421 data points, chi2=0.15)
[2026-03-20 14:18:20] 2026-03-20 13:17:07,611 | INFO     | could have reported an average CPU frequency of 2250 MHz (19 samples)
[2026-03-20 14:18:20] 2026-03-20 13:17:07,612 | INFO     | ..............................
[2026-03-20 14:18:20] 2026-03-20 13:17:07,612 | INFO     | . Timing measurements:
[2026-03-20 14:18:20] 2026-03-20 13:17:07,612 | INFO     | . get job = 0 s
[2026-03-20 14:18:20] 2026-03-20 13:17:07,612 | INFO     | . initial setup = 95 s
[2026-03-20 14:18:20] 2026-03-20 13:17:07,612 | INFO     | . payload setup = 160 s
[2026-03-20 14:18:20] 2026-03-20 13:17:07,612 | INFO     | . stage-in = 0 s
[2026-03-20 14:18:20] 2026-03-20 13:17:07,612 | INFO     | . payload execution = 28004 s
[2026-03-20 14:18:20] 2026-03-20 13:17:07,612 | INFO     | . stage-out = 2 s
[2026-03-20 14:18:20] 2026-03-20 13:17:07,612 | INFO     | . log creation = 0 s
[2026-03-20 14:18:20] 2026-03-20 13:17:07,612 | INFO     | ..............................
[2026-03-20 14:18:20] 2026-03-20 13:17:07,732 | INFO     | 
[2026-03-20 14:18:20] 2026-03-20 13:17:07,732 | INFO     | job summary report
[2026-03-20 14:18:20] 2026-03-20 13:17:07,732 | INFO     | --------------------------------------------------
[2026-03-20 14:18:20] 2026-03-20 13:17:07,732 | INFO     | PanDA job id: 7050074031
[2026-03-20 14:18:20] 2026-03-20 13:17:07,732 | INFO     | task id: 48966951
[2026-03-20 14:18:20] 2026-03-20 13:17:07,732 | INFO     | errors: (none)
[2026-03-20 14:18:20] 2026-03-20 13:17:07,732 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-20 14:18:20] 2026-03-20 13:17:07,732 | INFO     | pilot state: finished 
[2026-03-20 14:18:20] 2026-03-20 13:17:07,732 | INFO     | transexitcode: 0
[2026-03-20 14:18:20] 2026-03-20 13:17:07,733 | INFO     | exeerrorcode: 0
[2026-03-20 14:18:20] 2026-03-20 13:17:07,733 | INFO     | exeerrordiag: 
[2026-03-20 14:18:20] 2026-03-20 13:17:07,733 | INFO     | exitcode: 0
[2026-03-20 14:18:20] 2026-03-20 13:17:07,733 | INFO     | exitmsg: OK
[2026-03-20 14:18:20] 2026-03-20 13:17:07,733 | INFO     | cpuconsumptiontime: 109620 s
[2026-03-20 14:18:20] 2026-03-20 13:17:07,733 | INFO     | nevents: 400
[2026-03-20 14:18:20] 2026-03-20 13:17:07,733 | INFO     | neventsw: 0
[2026-03-20 14:18:20] 2026-03-20 13:17:07,733 | INFO     | pid: 17616
[2026-03-20 14:18:20] 2026-03-20 13:17:07,733 | INFO     | pgrp: 17616
[2026-03-20 14:18:20] 2026-03-20 13:17:07,733 | INFO     | corecount: 8
[2026-03-20 14:18:20] 2026-03-20 13:17:07,733 | INFO     | event service: False
[2026-03-20 14:18:20] 2026-03-20 13:17:07,733 | INFO     | sizes: {0: 2279716, 1: 2280173, 2: 2280233, 12: 2280261, 28169: 2317096, 28171: 2326094, 28173: 2326472}
[2026-03-20 14:18:20] 2026-03-20 13:17:07,733 | INFO     | --------------------------------------------------
[2026-03-20 14:18:20] 2026-03-20 13:17:07,734 | INFO     | 
[2026-03-20 14:18:20] 2026-03-20 13:17:07,734 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-03-20 14:18:20] 2026-03-20 13:17:08,063 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-20 14:18:20] 2026-03-20 13:17:08,064 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-20 14:18:20] 2026-03-20 13:17:08,064 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-20 14:18:20] 2026-03-20 13:17:08,064 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-20 14:18:20] 2026-03-20 13:17:08,064 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-20 14:18:20] 2026-03-20 13:17:08,064 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-20 14:18:20] 2026-03-20 13:17:08,064 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-20 14:18:20] 2026-03-20 13:17:08,064 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-20 14:18:20] 2026-03-20 13:17:08,064 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-20 14:18:20] 2026-03-20 13:17:08,064 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-20 14:18:20] 2026-03-20 13:17:08,065 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-20 14:18:20] 2026-03-20 13:17:08,065 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-20 14:18:20] 2026-03-20 13:17:08,065 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-20 14:18:20] 2026-03-20 13:17:08,065 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-20 14:18:20] 2026-03-20 13:17:08,065 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-20 14:18:20] 2026-03-20 13:17:08,065 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-20 14:18:20] 2026-03-20 13:17:08,065 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-20 14:18:20] 2026-03-20 13:17:08,065 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-20 14:18:20] 2026-03-20 13:17:08,065 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-20 14:18:20] 2026-03-20 13:17:08,065 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-20 14:18:20] 2026-03-20 13:17:08,065 | INFO     | job 7050074031 has completed (purged errors)
[2026-03-20 14:18:20] 2026-03-20 13:17:08,066 | INFO     | overall cleanup function is called
[2026-03-20 14:18:20] 2026-03-20 13:17:09,074 | INFO     | --- collectZombieJob: --- 10, [17616]
[2026-03-20 14:18:20] 2026-03-20 13:17:09,074 | INFO     | zombie collector waiting for pid 17616
[2026-03-20 14:18:20] 2026-03-20 13:17:09,074 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-20 14:18:20] 2026-03-20 13:17:09,074 | INFO     | collected zombie processes
[2026-03-20 14:18:20] 2026-03-20 13:17:09,074 | INFO     | will attempt to kill all subprocesses of pid=17616
[2026-03-20 14:18:20] 2026-03-20 13:17:09,151 | INFO     | process IDs to be killed: [17616] (in reverse order)
[2026-03-20 14:18:20] 2026-03-20 13:17:09,918 | WARNING  | found no corresponding commands to process id(s)
[2026-03-20 14:18:20] 2026-03-20 13:17:09,919 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-20 14:18:20] 2026-03-20 13:17:09,921 | INFO     | did not find any defunct processes belonging to 17616
[2026-03-20 14:18:20] 2026-03-20 13:17:09,924 | INFO     | did not find any defunct processes belonging to 17616
[2026-03-20 14:18:20] 2026-03-20 13:17:09,924 | INFO     | ready for new job
[2026-03-20 14:18:20] 2026-03-20 13:17:09,924 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-20 14:18:20] 2026-03-20 13:17:09,927 | INFO     | **************************************
[2026-03-20 14:18:20] 2026-03-20 13:17:09,927 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-20 14:18:20] 2026-03-20 13:17:09,927 | INFO     | **************************************
[2026-03-20 14:18:20] 2026-03-20 13:17:09,927 | INFO     | 
[2026-03-20 14:18:20] 2026-03-20 13:17:09,928 | INFO     | pilot is running in a VM
[2026-03-20 14:18:20] 2026-03-20 13:17:09,928 | INFO     | architecture information:
[2026-03-20 14:18:20] 2026-03-20 13:17:09,938 | INFO     | executing command: cat /etc/os-release
[2026-03-20 14:18:20] 2026-03-20 13:17:10,241 | INFO     | cat /etc/os-release:
[2026-03-20 14:18:20] NAME="CentOS Linux"
[2026-03-20 14:18:20] VERSION="7 (Core)"
[2026-03-20 14:18:20] ID="centos"
[2026-03-20 14:18:20] ID_LIKE="rhel fedora"
[2026-03-20 14:18:20] VERSION_ID="7"
[2026-03-20 14:18:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-20 14:18:20] ANSI_COLOR="0;31"
[2026-03-20 14:18:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-20 14:18:20] HOME_URL="https://www.centos.org/"
[2026-03-20 14:18:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-20 14:18:20] 
[2026-03-20 14:18:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-20 14:18:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-20 14:18:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-20 14:18:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-20 14:18:20] 
[2026-03-20 14:18:20] 2026-03-20 13:17:10,241 | INFO     | **************************************
[2026-03-20 14:18:20] 2026-03-20 13:17:10,745 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-03-20 14:18:20] 2026-03-20 13:17:10,977 | INFO     | sufficient remaining disk space (495610494976 B)
[2026-03-20 14:18:20] 2026-03-20 13:17:10,978 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-20 14:18:20] 2026-03-20 13:17:10,978 | INFO     | current server update state: UPDATING_FINAL
[2026-03-20 14:18:20] 2026-03-20 13:17:10,978 | INFO     | update_server=False
[2026-03-20 14:18:20] 2026-03-20 13:17:10,978 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-20 14:18:20] 2026-03-20 13:17:11,150 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-20 14:18:20] 2026-03-20 13:17:11,299 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-20 14:18:20] 2026-03-20 13:17:11,299 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-20 14:18:20] 2026-03-20 13:17:11,299 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-20 14:18:20] 2026-03-20 13:17:11,299 | INFO     | will abort loop
[2026-03-20 14:18:20] 2026-03-20 13:17:11,881 | INFO     | all data control threads have been joined
[2026-03-20 14:18:20] 2026-03-20 13:17:11,885 | INFO     | all payload control threads have been joined
[2026-03-20 14:18:20] 2026-03-20 13:17:11,984 | INFO     | [job] retrieve thread has finished
[2026-03-20 14:18:20] 2026-03-20 13:17:12,005 | INFO     | [data] copytool_in thread has finished
[2026-03-20 14:18:20] 2026-03-20 13:17:12,265 | INFO     | [job] create_data_payload thread has finished
[2026-03-20 14:18:20] 2026-03-20 13:17:12,286 | INFO     | all job control threads have been joined
[2026-03-20 14:18:20] 2026-03-20 13:17:12,305 | INFO     | [job] job monitor thread has finished
[2026-03-20 14:18:20] 2026-03-20 13:17:12,533 | INFO     | [payload] validate_post thread has finished
[2026-03-20 14:18:20] 2026-03-20 13:17:12,647 | INFO     | [payload] validate_pre thread has finished
[2026-03-20 14:18:20] 2026-03-20 13:17:12,743 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-20 14:18:20] 2026-03-20 13:17:12,887 | INFO     | [data] control thread has finished
[2026-03-20 14:18:20] 2026-03-20 13:17:12,891 | INFO     | [payload] control thread has finished
[2026-03-20 14:18:20] 2026-03-20 13:17:13,035 | INFO     | [job] validate thread has finished
[2026-03-20 14:18:20] 2026-03-20 13:17:13,108 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-20 14:18:20] 2026-03-20 13:17:13,156 | INFO     | [data] copytool_out thread has finished
[2026-03-20 14:18:20] 2026-03-20 13:17:13,292 | INFO     | [job] control thread has finished
[2026-03-20 14:18:20] 2026-03-20 13:17:13,390 | INFO     | [payload] execute_payloads thread has finished
[2026-03-20 14:18:20] 2026-03-20 13:17:13,563 | INFO     | [payload] failed_post thread has finished
[2026-03-20 14:18:20] 2026-03-20 13:17:13,749 | INFO     | [job] queue monitor thread has finished
[2026-03-20 14:18:20] 2026-03-20 13:17:17,115 | INFO     | [data] queue_monitor thread has finished
[2026-03-20 14:18:20] 2026-03-20 13:17:21,634 | INFO     | job.realtimelogging is not enabled
[2026-03-20 14:18:20] 2026-03-20 13:17:22,639 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-20 14:18:20] 2026-03-20 13:17:40,309 | INFO     | PID=13117 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-20 14:18:20] 2026-03-20 13:17:40,309 | INFO     | .. there are 9 such processes running
[2026-03-20 14:18:20] 2026-03-20 13:17:40,310 | INFO     | found 0 job(s) in 20 queues
[2026-03-20 14:18:20] 2026-03-20 13:17:40,310 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-20 14:18:20] 2026-03-20 13:17:40,311 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-20 14:18:20] 2026-03-20 13:18:10,259 | INFO     | [monitor] cgroup control has ended
[2026-03-20 14:18:20] 2026-03-20 13:18:10,748 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139899493173056)>', '<ExcThread(monitor, started 139898761770752)>']
[2026-03-20 14:18:20] 2026-03-20 13:18:11,495 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-20 14:18:20] 2026-03-20 13:18:11,495 | INFO     | [monitor] control thread has ended
[2026-03-20 14:18:20] 2026-03-20 13:18:15,773 | INFO     | all workflow threads have been joined
[2026-03-20 14:18:20] 2026-03-20 13:18:15,773 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-20 14:18:20] 2026-03-20 13:18:15,773 | INFO     | traces error code: 0
[2026-03-20 14:18:20] 2026-03-20 13:18:15,773 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-20 14:18:20] 2026-03-20 13:18:16,065 [wrapper] ==== pilot stdout END ====
[2026-03-20 14:18:20] 2026-03-20 13:18:16,143 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-20 14:18:20] 2026-03-20 13:18:16,204 [wrapper] pilotpid: 13117
[2026-03-20 14:18:20] 2026-03-20 13:18:16,312 [wrapper] Pilot exit status: 0
[2026-03-20 14:18:20] 2026-03-20 13:18:16,782 [wrapper] pandaids: 7050074031
[2026-03-20 14:18:20] 2026-03-20 13:18:17,412 [wrapper] cleanup supervisor_pilot 27912 13118
[2026-03-20 14:18:20] 2026-03-20 13:18:17,457 [wrapper] Test setup, not cleaning
[2026-03-20 14:18:20] 2026-03-20 13:18:17,514 [wrapper] apfmon messages muted
[2026-03-20 14:18:20] 2026-03-20 13:18:17,600 [wrapper] ==== wrapper stdout END ====
[2026-03-20 14:18:20] 2026-03-20 13:18:17,687 [wrapper] ==== wrapper stderr END ====
[2026-03-20 14:18:20]  *** Error codes and diagnostics ***
[2026-03-20 14:18:20]     "exeErrorCode": 0,
[2026-03-20 14:18:20]     "exeErrorDiag": "",
[2026-03-20 14:18:20]     "pilotErrorCode": 0,
[2026-03-20 14:18:20]     "pilotErrorDiag": "",
[2026-03-20 14:18:20]  *** Listing of results directory ***
[2026-03-20 14:18:20] total 517032
[2026-03-20 14:18:20] -rw-r--r--. 1 boinc boinc    585013 Mar 11 18:53 pilot3.tar.gz
[2026-03-20 14:18:20] -rw-r--r--. 1 boinc boinc      5111 Mar 11 19:05 queuedata.json
[2026-03-20 14:18:20] -rwx------. 1 boinc boinc     36322 Mar 11 19:05 runpilot2-wrapper.sh
[2026-03-20 14:18:20] -rw-r--r--. 1 boinc boinc       100 Mar 20 06:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-20 14:18:20] -rwxr-xr-x. 1 boinc boinc      7986 Mar 20 06:22 run_atlas
[2026-03-20 14:18:20] -rw-r--r--. 1 boinc boinc       105 Mar 20 06:22 job.xml
[2026-03-20 14:18:20] -rw-r--r--. 2 boinc boinc    597511 Mar 20 06:22 input.tar.gz
[2026-03-20 14:18:20] -rw-r--r--. 1 boinc boinc      6390 Mar 20 06:22 init_data.xml
[2026-03-20 14:18:20] -rw-r--r--. 2 boinc boinc 238237052 Mar 20 06:22 EVNT.48966948._000088.pool.root.1
[2026-03-20 14:18:20] -rw-r--r--. 2 boinc boinc     15845 Mar 20 06:22 start_atlas.sh
[2026-03-20 14:18:20] drwxrwx--x. 2 boinc boinc        68 Mar 20 06:22 shared
[2026-03-20 14:18:20] -rw-r--r--. 1 boinc boinc         0 Mar 20 06:22 boinc_lockfile
[2026-03-20 14:18:20] -rw-r--r--. 1 boinc boinc      2539 Mar 20 06:22 pandaJob.out
[2026-03-20 14:18:20] -rw-------. 1 boinc boinc       413 Mar 20 06:27 workernode_map.json
[2026-03-20 14:18:20] -rw-------. 1 boinc boinc   1010740 Mar 20 06:27 agis_schedconf.cvmfs.json
[2026-03-20 14:18:20] drwx------. 5 boinc boinc      4096 Mar 20 06:27 pilot3
[2026-03-20 14:18:20] -rw-------. 1 boinc boinc 278132839 Mar 20 14:16 HITS.48966951._002225.pool.root.1
[2026-03-20 14:18:20] -rw-r--r--. 1 boinc boinc       531 Mar 20 14:16 boinc_task_state.xml
[2026-03-20 14:18:20] -rw-------. 1 boinc boinc      1013 Mar 20 14:16 memory_monitor_summary.json
[2026-03-20 14:18:20] -rw-------. 1 boinc boinc   1511579 Mar 20 14:17 agis_ddmendpoints.agis.ALL.json
[2026-03-20 14:18:20] -rw-------. 1 boinc boinc    668722 Mar 20 14:17 log.48966951._002225.job.log.tgz.1
[2026-03-20 14:18:20] -rw-------. 1 boinc boinc      6312 Mar 20 14:17 heartbeat.json
[2026-03-20 14:18:20] -rw-------. 1 boinc boinc        95 Mar 20 14:17 pilot_heartbeat.json
[2026-03-20 14:18:20] -rw-r--r--. 1 boinc boinc      8192 Mar 20 14:17 boinc_mmap_file
[2026-03-20 14:18:20] -rw-r--r--. 1 boinc boinc        29 Mar 20 14:17 wrapper_checkpoint.txt
[2026-03-20 14:18:20] -rw-------. 1 boinc boinc      5138 Mar 20 14:18 pilotlog.txt
[2026-03-20 14:18:20] -rw-------. 1 boinc boinc   3904284 Mar 20 14:18 log.48966951._002225.job.log.1
[2026-03-20 14:18:20] -rw-------. 1 boinc boinc       357 Mar 20 14:18 output.list
[2026-03-20 14:18:20] -rw-r--r--. 1 boinc boinc       620 Mar 20 14:18 runtime_log
[2026-03-20 14:18:20] -rw-------. 1 boinc boinc   4587520 Mar 20 14:18 result.tar.gz
[2026-03-20 14:18:20] -rw-r--r--. 1 boinc boinc      8816 Mar 20 14:18 runtime_log.err
[2026-03-20 14:18:20] -rw-------. 1 boinc boinc       658 Mar 20 14:18 doWNDmS7cK9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm2ZkLDmMqcRLn.diag
[2026-03-20 14:18:20] -rw-r--r--. 1 boinc boinc     20650 Mar 20 14:18 stderr.txt
[2026-03-20 14:18:20] HITS file was successfully produced:
[2026-03-20 14:18:20] -rw-------. 1 boinc boinc 278132839 Mar 20 14:16 shared/HITS.pool.root.1
[2026-03-20 14:18:20]  *** Contents of shared directory: ***
[2026-03-20 14:18:20] total 509352
[2026-03-20 14:18:20] -rw-r--r--. 2 boinc boinc    597511 Mar 20 06:22 input.tar.gz
[2026-03-20 14:18:20] -rw-r--r--. 2 boinc boinc 238237052 Mar 20 06:22 ATLAS.root_0
[2026-03-20 14:18:20] -rw-r--r--. 2 boinc boinc     15845 Mar 20 06:22 start_atlas.sh
[2026-03-20 14:18:20] -rw-------. 1 boinc boinc 278132839 Mar 20 14:16 HITS.pool.root.1
[2026-03-20 14:18:20] -rw-------. 1 boinc boinc   4587520 Mar 20 14:18 result.tar.gz
14:18:21 (9039): run_atlas exited; CPU time 109990.040320
14:18:21 (9039): called boinc_finish(0)

</stderr_txt>
]]>

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