Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
23:08:04 (24807): wrapper (7.7.26015): starting
23:08:04 (24807): wrapper: running run_atlas (--nthreads 8)
[2026-03-18 23:08:04] Arguments: --nthreads 8
[2026-03-18 23:08:04] Threads: 8
[2026-03-18 23:08:04] Checking for CVMFS
[2026-03-18 23:08:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-18 23:08:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-18 23:08:04] Running cvmfs_config stat atlas.cern.ch
[2026-03-18 23:08:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-18 23:08:05] 2.11.0.0 5945 13663 77308 157430 2 50 2633385 4096001 0 130560 0 5562727 99.872 1106922 275 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-18 23:08:05] CVMFS is ok
[2026-03-18 23:08:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-18 23:08:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-18 23:08:05] Further information can be found at the LHC@home message board.
[2026-03-18 23:08:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-18 23:08:05] Checking for apptainer binary...
[2026-03-18 23:08:05] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-18 23:08:05] apptainer is not installed, using version from CVMFS
[2026-03-18 23:08:05] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-18 23:08:05] WARNING: Environment variable TMPDIR already has value [/tmp/job_11341387/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node006
[2026-03-18 23:08:05] apptainer works
[2026-03-18 23:08:05] Set ATHENA_PROC_NUMBER=8
[2026-03-18 23:08:05] Set ATHENA_CORE_NUMBER=8
[2026-03-18 23:08:05] Starting ATLAS job with PandaID=7058834326
[2026-03-18 23:08:05] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11341387/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-19 00:50:26]  *** The last 200 lines of the pilot log: ***
[2026-03-19 00:50:26] 2026-03-18 23:49:41,013 | INFO     | job 7058834326 has finished - writing final server update
[2026-03-19 00:50:26] 2026-03-18 23:49:41,013 | INFO     | total number of processed events: 400 (read)
[2026-03-19 00:50:26] 2026-03-18 23:49:41,029 | INFO     | using path: /tmp/job_11341387/atlas/pilot/slots/0/PanDA_Pilot-7058834326/memory_monitor_summary.json (trf name=prmon)
[2026-03-19 00:50:26] 2026-03-18 23:49:41,030 | INFO     | extracted standard info from prmon json
[2026-03-19 00:50:26] 2026-03-18 23:49:41,030 | INFO     | extracted standard memory fields from prmon json
[2026-03-19 00:50:26] 2026-03-18 23:49:41,030 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-19 00:50:26] 2026-03-18 23:49:41,030 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-19 00:50:26] 2026-03-18 23:49:41,030 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-19 00:50:26] 2026-03-18 23:49:41,031 | INFO     | fitting pss+swap vs Time
[2026-03-19 00:50:26] 2026-03-18 23:49:41,031 | INFO     | sum of square deviations: 310052325.0
[2026-03-19 00:50:26] 2026-03-18 23:49:41,032 | INFO     | sum of deviations: 6065510600.0
[2026-03-19 00:50:26] 2026-03-18 23:49:41,032 | INFO     | mean x: 1773874728.5
[2026-03-19 00:50:26] 2026-03-18 23:49:41,032 | INFO     | mean y: 2531128.7
[2026-03-19 00:50:26] 2026-03-18 23:49:41,032 | INFO     | intersect: -34699533978.50044
[2026-03-19 00:50:26] 2026-03-18 23:49:41,032 | INFO     | chi2: 1.0899454468921477
[2026-03-19 00:50:26] 2026-03-18 23:49:41,032 | INFO     | sum of square deviations: 265828240.0
[2026-03-19 00:50:26] 2026-03-18 23:49:41,032 | INFO     | sum of deviations: 5745225037.0
[2026-03-19 00:50:26] 2026-03-18 23:49:41,032 | INFO     | mean x: 1773874576.0
[2026-03-19 00:50:26] 2026-03-18 23:49:41,032 | INFO     | mean y: 2530024.505263158
[2026-03-19 00:50:26] 2026-03-18 23:49:41,032 | INFO     | intersect: -38335415660.02005
[2026-03-19 00:50:26] 2026-03-18 23:49:41,032 | INFO     | chi2: 1.0920743139774116
[2026-03-19 00:50:26] 2026-03-18 23:49:41,032 | INFO     | current chi2=1.0920743139774116 (change=-0.19531868235553967 %)
[2026-03-19 00:50:26] 2026-03-18 23:49:41,032 | INFO     | right removable region: 94
[2026-03-19 00:50:26] 2026-03-18 23:49:41,033 | INFO     | sum of square deviations: 265828240.0
[2026-03-19 00:50:26] 2026-03-18 23:49:41,033 | INFO     | sum of deviations: -1356344089.0000005
[2026-03-19 00:50:26] 2026-03-18 23:49:41,033 | INFO     | mean x: 1773874881.0
[2026-03-19 00:50:26] 2026-03-18 23:49:41,033 | INFO     | mean y: 2555450.3263157895
[2026-03-19 00:50:26] 2026-03-18 23:49:41,033 | INFO     | intersect: 9053455044.25181
[2026-03-19 00:50:26] 2026-03-18 23:49:41,033 | INFO     | chi2: 0.022402517767277155
[2026-03-19 00:50:26] 2026-03-18 23:49:41,033 | INFO     | current chi2=0.022402517767277155 (change=97.9446202714865 %)
[2026-03-19 00:50:26] 2026-03-18 23:49:41,033 | INFO     | sum of square deviations: 226022842.5
[2026-03-19 00:50:26] 2026-03-18 23:49:41,033 | INFO     | sum of deviations: -634084233.5
[2026-03-19 00:50:26] 2026-03-18 23:49:41,033 | INFO     | mean x: 1773875033.5
[2026-03-19 00:50:26] 2026-03-18 23:49:41,033 | INFO     | mean y: 2552854.033333333
[2026-03-19 00:50:26] 2026-03-18 23:49:41,033 | INFO     | intersect: 4978979919.990768
[2026-03-19 00:50:26] 2026-03-18 23:49:41,034 | INFO     | chi2: 0.0008984108396870559
[2026-03-19 00:50:26] 2026-03-18 23:49:41,034 | INFO     | current chi2=0.0008984108396870559 (change=95.98968808318794 %)
[2026-03-19 00:50:26] 2026-03-18 23:49:41,034 | INFO     | sum of square deviations: 190403570.0
[2026-03-19 00:50:26] 2026-03-18 23:49:41,034 | INFO     | sum of deviations: -565291148.000001
[2026-03-19 00:50:26] 2026-03-18 23:49:41,034 | INFO     | mean x: 1773875186.0
[2026-03-19 00:50:26] 2026-03-18 23:49:41,034 | INFO     | mean y: 2552547.505882353
[2026-03-19 00:50:26] 2026-03-18 23:49:41,034 | INFO     | intersect: 5269029117.785815
[2026-03-19 00:50:26] 2026-03-18 23:49:41,034 | INFO     | chi2: 0.0008474677180127916
[2026-03-19 00:50:26] 2026-03-18 23:49:41,034 | INFO     | current chi2=0.0008474677180127916 (change=5.670359196913672 %)
[2026-03-19 00:50:26] 2026-03-18 23:49:41,034 | INFO     | left removable region: 30
[2026-03-19 00:50:26] 2026-03-18 23:49:41,034 | INFO     | sum of square deviations: 81266640.0
[2026-03-19 00:50:26] 2026-03-18 23:49:41,034 | INFO     | sum of deviations: 37479925.0
[2026-03-19 00:50:26] 2026-03-18 23:49:41,034 | INFO     | mean x: 1773875460.5
[2026-03-19 00:50:26] 2026-03-18 23:49:41,034 | INFO     | mean y: 2548909.375
[2026-03-19 00:50:26] 2026-03-18 23:49:41,034 | INFO     | intersect: -815557009.8420423
[2026-03-19 00:50:26] 2026-03-18 23:49:41,035 | INFO     | chi2: 4.8375413357742176e-05
[2026-03-19 00:50:26] 2026-03-18 23:49:41,035 | INFO     | current memory leak: 0.46 B/s (using 64 data points, chi2=0.00)
[2026-03-19 00:50:26] 2026-03-18 23:49:41,035 | INFO     | could have reported an average CPU frequency of 2364 MHz (7 samples)
[2026-03-19 00:50:26] 2026-03-18 23:49:41,035 | INFO     | ..............................
[2026-03-19 00:50:26] 2026-03-18 23:49:41,035 | INFO     | . Timing measurements:
[2026-03-19 00:50:26] 2026-03-18 23:49:41,035 | INFO     | . get job = 0 s
[2026-03-19 00:50:26] 2026-03-18 23:49:41,035 | INFO     | . initial setup = 2 s
[2026-03-19 00:50:26] 2026-03-18 23:49:41,035 | INFO     | . payload setup = 3 s
[2026-03-19 00:50:26] 2026-03-18 23:49:41,035 | INFO     | . stage-in = 0 s
[2026-03-19 00:50:26] 2026-03-18 23:49:41,035 | INFO     | . payload execution = 6068 s
[2026-03-19 00:50:26] 2026-03-18 23:49:41,035 | INFO     | . stage-out = 0 s
[2026-03-19 00:50:26] 2026-03-18 23:49:41,035 | INFO     | . log creation = 0 s
[2026-03-19 00:50:26] 2026-03-18 23:49:41,035 | INFO     | ..............................
[2026-03-19 00:50:26] 2026-03-18 23:49:41,084 | INFO     | 
[2026-03-19 00:50:26] 2026-03-18 23:49:41,084 | INFO     | job summary report
[2026-03-19 00:50:26] 2026-03-18 23:49:41,084 | INFO     | --------------------------------------------------
[2026-03-19 00:50:26] 2026-03-18 23:49:41,084 | INFO     | PanDA job id: 7058834326
[2026-03-19 00:50:26] 2026-03-18 23:49:41,084 | INFO     | task id: 49180110
[2026-03-19 00:50:26] 2026-03-18 23:49:41,084 | INFO     | errors: (none)
[2026-03-19 00:50:26] 2026-03-18 23:49:41,084 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-19 00:50:26] 2026-03-18 23:49:41,084 | INFO     | pilot state: finished 
[2026-03-19 00:50:26] 2026-03-18 23:49:41,084 | INFO     | transexitcode: 0
[2026-03-19 00:50:26] 2026-03-18 23:49:41,084 | INFO     | exeerrorcode: 0
[2026-03-19 00:50:26] 2026-03-18 23:49:41,084 | INFO     | exeerrordiag: 
[2026-03-19 00:50:26] 2026-03-18 23:49:41,084 | INFO     | exitcode: 0
[2026-03-19 00:50:26] 2026-03-18 23:49:41,084 | INFO     | exitmsg: OK
[2026-03-19 00:50:26] 2026-03-18 23:49:41,084 | INFO     | cpuconsumptiontime: 45727 s
[2026-03-19 00:50:26] 2026-03-18 23:49:41,084 | INFO     | nevents: 400
[2026-03-19 00:50:26] 2026-03-18 23:49:41,084 | INFO     | neventsw: 0
[2026-03-19 00:50:26] 2026-03-18 23:49:41,085 | INFO     | pid: 695
[2026-03-19 00:50:26] 2026-03-18 23:49:41,085 | INFO     | pgrp: 695
[2026-03-19 00:50:26] 2026-03-18 23:49:41,085 | INFO     | corecount: 8
[2026-03-19 00:50:26] 2026-03-18 23:49:41,085 | INFO     | event service: False
[2026-03-19 00:50:26] 2026-03-18 23:49:41,085 | INFO     | sizes: {0: 2279684, 1: 2280255, 11: 2280255, 6075: 2307214, 6077: 2316298, 6078: 2316436}
[2026-03-19 00:50:26] 2026-03-18 23:49:41,085 | INFO     | --------------------------------------------------
[2026-03-19 00:50:26] 2026-03-18 23:49:41,085 | INFO     | 
[2026-03-19 00:50:26] 2026-03-18 23:49:41,085 | INFO     | executing command: ls -lF /tmp/job_11341387/atlas/pilot/slots/0
[2026-03-19 00:50:26] 2026-03-18 23:49:41,095 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-19 00:50:26] 2026-03-18 23:49:41,095 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-19 00:50:26] 2026-03-18 23:49:41,095 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-19 00:50:26] 2026-03-18 23:49:41,095 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-19 00:50:26] 2026-03-18 23:49:41,095 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-19 00:50:26] 2026-03-18 23:49:41,095 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-19 00:50:26] 2026-03-18 23:49:41,095 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-19 00:50:26] 2026-03-18 23:49:41,095 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-19 00:50:26] 2026-03-18 23:49:41,095 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-19 00:50:26] 2026-03-18 23:49:41,095 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-19 00:50:26] 2026-03-18 23:49:41,095 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-19 00:50:26] 2026-03-18 23:49:41,095 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-19 00:50:26] 2026-03-18 23:49:41,095 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-19 00:50:26] 2026-03-18 23:49:41,095 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-19 00:50:26] 2026-03-18 23:49:41,095 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-19 00:50:26] 2026-03-18 23:49:41,095 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-19 00:50:26] 2026-03-18 23:49:41,095 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-19 00:50:26] 2026-03-18 23:49:41,095 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-19 00:50:26] 2026-03-18 23:49:41,095 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-19 00:50:26] 2026-03-18 23:49:41,095 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-19 00:50:26] 2026-03-18 23:49:41,096 | INFO     | job 7058834326 has completed (purged errors)
[2026-03-19 00:50:26] 2026-03-18 23:49:41,096 | INFO     | overall cleanup function is called
[2026-03-19 00:50:26] 2026-03-18 23:49:42,102 | INFO     | --- collectZombieJob: --- 10, [695]
[2026-03-19 00:50:26] 2026-03-18 23:49:42,102 | INFO     | zombie collector waiting for pid 695
[2026-03-19 00:50:26] 2026-03-18 23:49:42,102 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-19 00:50:26] 2026-03-18 23:49:42,102 | INFO     | collected zombie processes
[2026-03-19 00:50:26] 2026-03-18 23:49:42,102 | INFO     | will attempt to kill all subprocesses of pid=695
[2026-03-19 00:50:26] 2026-03-18 23:49:42,216 | INFO     | process IDs to be killed: [695] (in reverse order)
[2026-03-19 00:50:26] 2026-03-18 23:49:42,255 | WARNING  | found no corresponding commands to process id(s)
[2026-03-19 00:50:26] 2026-03-18 23:49:42,255 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-19 00:50:26] 2026-03-18 23:49:42,259 | INFO     | did not find any defunct processes belonging to 695
[2026-03-19 00:50:26] 2026-03-18 23:49:42,262 | INFO     | did not find any defunct processes belonging to 695
[2026-03-19 00:50:26] 2026-03-18 23:49:42,263 | INFO     | ready for new job
[2026-03-19 00:50:26] 2026-03-18 23:49:42,263 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-19 00:50:26] 2026-03-18 23:49:42,263 | INFO     | **************************************
[2026-03-19 00:50:26] 2026-03-18 23:49:42,263 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-19 00:50:26] 2026-03-18 23:49:42,263 | INFO     | **************************************
[2026-03-19 00:50:26] 2026-03-18 23:49:42,263 | INFO     | 
[2026-03-19 00:50:26] 2026-03-18 23:49:42,277 | INFO     | architecture information:
[2026-03-19 00:50:26] 2026-03-18 23:49:42,277 | INFO     | executing command: cat /etc/os-release
[2026-03-19 00:50:26] 2026-03-18 23:49:42,284 | INFO     | cat /etc/os-release:
[2026-03-19 00:50:26] NAME="CentOS Linux"
[2026-03-19 00:50:26] VERSION="7 (Core)"
[2026-03-19 00:50:26] ID="centos"
[2026-03-19 00:50:26] ID_LIKE="rhel fedora"
[2026-03-19 00:50:26] VERSION_ID="7"
[2026-03-19 00:50:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-19 00:50:26] ANSI_COLOR="0;31"
[2026-03-19 00:50:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-19 00:50:26] HOME_URL="https://www.centos.org/"
[2026-03-19 00:50:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-19 00:50:26] 
[2026-03-19 00:50:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-19 00:50:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-19 00:50:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-19 00:50:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-19 00:50:26] 
[2026-03-19 00:50:26] 2026-03-18 23:49:42,284 | INFO     | **************************************
[2026-03-19 00:50:26] 2026-03-18 23:49:42,787 | INFO     | executing command: df -mP /tmp/job_11341387/atlas/pilot/slots/0
[2026-03-19 00:50:26] 2026-03-18 23:49:42,794 | INFO     | sufficient remaining disk space (224630145024 B)
[2026-03-19 00:50:26] 2026-03-18 23:49:42,794 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-19 00:50:26] 2026-03-18 23:49:42,794 | INFO     | current server update state: UPDATING_FINAL
[2026-03-19 00:50:26] 2026-03-18 23:49:42,794 | INFO     | update_server=False
[2026-03-19 00:50:26] 2026-03-18 23:49:42,794 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-19 00:50:26] 2026-03-18 23:49:42,794 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-19 00:50:26] 2026-03-18 23:49:42,794 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-19 00:50:26] 2026-03-18 23:49:42,957 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-19 00:50:26] 2026-03-18 23:49:42,957 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-19 00:50:26] 2026-03-18 23:49:42,957 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-19 00:50:26] 2026-03-18 23:49:42,957 | INFO     | will abort loop
[2026-03-19 00:50:26] 2026-03-18 23:49:43,456 | INFO     | all job control threads have been joined
[2026-03-19 00:50:26] 2026-03-18 23:49:43,503 | INFO     | all data control threads have been joined
[2026-03-19 00:50:26] 2026-03-18 23:49:43,799 | INFO     | [job] retrieve thread has finished
[2026-03-19 00:50:26] 2026-03-18 23:49:43,799 | INFO     | [job] queue monitor thread has finished
[2026-03-19 00:50:26] 2026-03-18 23:49:43,889 | INFO     | [payload] validate_post thread has finished
[2026-03-19 00:50:26] 2026-03-18 23:49:43,963 | INFO     | [job] job monitor thread has finished
[2026-03-19 00:50:26] 2026-03-18 23:49:44,038 | INFO     | all payload control threads have been joined
[2026-03-19 00:50:26] 2026-03-18 23:49:44,084 | INFO     | [job] create_data_payload thread has finished
[2026-03-19 00:50:26] 2026-03-18 23:49:44,119 | INFO     | [payload] failed_post thread has finished
[2026-03-19 00:50:26] 2026-03-18 23:49:44,228 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-19 00:50:26] 2026-03-18 23:49:44,461 | INFO     | [job] control thread has finished
[2026-03-19 00:50:26] 2026-03-18 23:49:44,508 | INFO     | [data] control thread has finished
[2026-03-19 00:50:26] 2026-03-18 23:49:44,575 | INFO     | [job] validate thread has finished
[2026-03-19 00:50:26] 2026-03-18 23:49:44,723 | INFO     | [payload] validate_pre thread has finished
[2026-03-19 00:50:26] 2026-03-18 23:49:44,786 | INFO     | [data] copytool_in thread has finished
[2026-03-19 00:50:26] 2026-03-18 23:49:44,799 | INFO     | [data] copytool_out thread has finished
[2026-03-19 00:50:26] 2026-03-18 23:49:45,035 | INFO     | [payload] execute_payloads thread has finished
[2026-03-19 00:50:26] 2026-03-18 23:49:45,043 | INFO     | [payload] control thread has finished
[2026-03-19 00:50:26] 2026-03-18 23:49:45,756 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-19 00:50:26] 2026-03-18 23:49:49,761 | INFO     | [data] queue_monitor thread has finished
[2026-03-19 00:50:26] 2026-03-18 23:50:12,354 | INFO     | PID=28557 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-19 00:50:26] 2026-03-18 23:50:12,354 | INFO     | .. there are 7 such processes running
[2026-03-19 00:50:26] 2026-03-18 23:50:12,355 | INFO     | found 0 job(s) in 20 queues
[2026-03-19 00:50:26] 2026-03-18 23:50:12,355 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-19 00:50:26] 2026-03-18 23:50:12,355 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-19 00:50:26] 2026-03-18 23:50:21,405 | INFO     | [monitor] cgroup control has ended
[2026-03-19 00:50:26] 2026-03-18 23:50:21,605 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456063190784)>']
[2026-03-19 00:50:26] 2026-03-18 23:50:22,404 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-19 00:50:26] 2026-03-18 23:50:22,404 | INFO     | [monitor] control thread has ended
[2026-03-19 00:50:26] 2026-03-18 23:50:26,630 | INFO     | all workflow threads have been joined
[2026-03-19 00:50:26] 2026-03-18 23:50:26,630 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-19 00:50:26] 2026-03-18 23:50:26,630 | INFO     | traces error code: 0
[2026-03-19 00:50:26] 2026-03-18 23:50:26,630 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-19 00:50:26] 2026-03-18 23:50:26,681 [wrapper] ==== pilot stdout END ====
[2026-03-19 00:50:26] 2026-03-18 23:50:26,683 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-19 00:50:26] 2026-03-18 23:50:26,683 [wrapper] pilotpid: 28557
[2026-03-19 00:50:26] 2026-03-18 23:50:26,684 [wrapper] Pilot exit status: 0
[2026-03-19 00:50:26] 2026-03-18 23:50:26,688 [wrapper] pandaids: 7058834326
[2026-03-19 00:50:26] 2026-03-18 23:50:26,713 [wrapper] cleanup supervisor_pilot  7204 28558
[2026-03-19 00:50:26] 2026-03-18 23:50:26,714 [wrapper] Test setup, not cleaning
[2026-03-19 00:50:26] 2026-03-18 23:50:26,715 [wrapper] apfmon messages muted
[2026-03-19 00:50:26] 2026-03-18 23:50:26,716 [wrapper] ==== wrapper stdout END ====
[2026-03-19 00:50:26] 2026-03-18 23:50:26,717 [wrapper] ==== wrapper stderr END ====
[2026-03-19 00:50:26]  *** Error codes and diagnostics ***
[2026-03-19 00:50:26]     "exeErrorCode": 0,
[2026-03-19 00:50:26]     "exeErrorDiag": "",
[2026-03-19 00:50:26]     "pilotErrorCode": 0,
[2026-03-19 00:50:26]     "pilotErrorDiag": "",
[2026-03-19 00:50:26]  *** Listing of results directory ***
[2026-03-19 00:50:26] total 492480
[2026-03-19 00:50:26] -rw------- 1 mf493845 unix-user    585013 Mar 18 14:20 pilot3.tar.gz
[2026-03-19 00:50:26] -rwx------ 1 mf493845 unix-user     36322 Mar 18 14:21 runpilot2-wrapper.sh
[2026-03-19 00:50:26] -rw------- 1 mf493845 unix-user      5111 Mar 18 14:22 queuedata.json
[2026-03-19 00:50:26] -rw------- 1 mf493845 unix-user       100 Mar 18 22:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-19 00:50:26] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 18 22:04 run_atlas
[2026-03-19 00:50:26] -rw------- 1 mf493845 unix-user       105 Mar 18 22:04 job.xml
[2026-03-19 00:50:26] -rw-r--r-- 2 mf493845 unix-user 251088871 Mar 18 23:08 EVNT.49132718._000037.pool.root.1
[2026-03-19 00:50:26] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 18 23:08 start_atlas.sh
[2026-03-19 00:50:26] drwxrwx--x 2 mf493845 unix-user       100 Mar 18 23:08 shared
[2026-03-19 00:50:26] -rw-r--r-- 2 mf493845 unix-user    597543 Mar 18 23:08 input.tar.gz
[2026-03-19 00:50:26] -rw------- 1 mf493845 unix-user      6389 Mar 18 23:08 init_data.xml
[2026-03-19 00:50:26] -rw------- 1 mf493845 unix-user         0 Mar 18 23:08 boinc_setup_complete
[2026-03-19 00:50:26] -rw------- 1 mf493845 unix-user      8192 Mar 18 23:08 boinc_mmap_file
[2026-03-19 00:50:26] -rw------- 1 mf493845 unix-user         0 Mar 18 23:08 boinc_lockfile
[2026-03-19 00:50:26] -rw------- 1 mf493845 unix-user      2575 Mar 18 23:08 pandaJob.out
[2026-03-19 00:50:26] -rw------- 1 mf493845 unix-user   1010366 Mar 18 23:08 agis_schedconf.cvmfs.json
[2026-03-19 00:50:26] -rw------- 1 mf493845 unix-user   1511579 Mar 18 23:08 agis_ddmendpoints.agis.ALL.json
[2026-03-19 00:50:26] -rw------- 1 mf493845 unix-user       416 Mar 18 23:08 workernode_map.json
[2026-03-19 00:50:26] drwx------ 5 mf493845 unix-user       440 Mar 18 23:08 pilot3
[2026-03-19 00:50:26] -rw------- 1 mf493845 unix-user 246807721 Mar 19 00:49 HITS.49180110._000656.pool.root.1
[2026-03-19 00:50:26] -rw------- 1 mf493845 unix-user        95 Mar 19 00:49 pilot_heartbeat.json
[2026-03-19 00:50:26] -rw------- 1 mf493845 unix-user      1014 Mar 19 00:49 memory_monitor_summary.json
[2026-03-19 00:50:26] -rw------- 1 mf493845 unix-user    349441 Mar 19 00:49 log.49180110._000656.job.log.tgz.1
[2026-03-19 00:50:26] -rw------- 1 mf493845 unix-user      6299 Mar 19 00:49 heartbeat.json
[2026-03-19 00:50:26] -rw------- 1 mf493845 unix-user      5017 Mar 19 00:50 pilotlog.txt
[2026-03-19 00:50:26] -rw------- 1 mf493845 unix-user    897408 Mar 19 00:50 log.49180110._000656.job.log.1
[2026-03-19 00:50:26] -rw------- 1 mf493845 unix-user       357 Mar 19 00:50 output.list
[2026-03-19 00:50:26] -rw------- 1 mf493845 unix-user       620 Mar 19 00:50 runtime_log
[2026-03-19 00:50:26] -rw------- 1 mf493845 unix-user   1259520 Mar 19 00:50 result.tar.gz
[2026-03-19 00:50:26] -rw------- 1 mf493845 unix-user      9219 Mar 19 00:50 runtime_log.err
[2026-03-19 00:50:26] -rw------- 1 mf493845 unix-user       645 Mar 19 00:50 9wEMDmu05M9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmC91LDmsgnobn.diag
[2026-03-19 00:50:26] -rw------- 1 mf493845 unix-user     21460 Mar 19 00:50 stderr.txt
[2026-03-19 00:50:26] HITS file was successfully produced:
[2026-03-19 00:50:26] -rw------- 1 mf493845 unix-user 246807721 Mar 19 00:49 shared/HITS.pool.root.1
[2026-03-19 00:50:26]  *** Contents of shared directory: ***
[2026-03-19 00:50:26] total 488060
[2026-03-19 00:50:26] -rw-r--r-- 2 mf493845 unix-user 251088871 Mar 18 23:08 ATLAS.root_0
[2026-03-19 00:50:26] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 18 23:08 start_atlas.sh
[2026-03-19 00:50:26] -rw-r--r-- 2 mf493845 unix-user    597543 Mar 18 23:08 input.tar.gz
[2026-03-19 00:50:26] -rw------- 1 mf493845 unix-user 246807721 Mar 19 00:49 HITS.pool.root.1
[2026-03-19 00:50:26] -rw------- 1 mf493845 unix-user   1259520 Mar 19 00:50 result.tar.gz
00:50:28 (24807): run_atlas exited; CPU time 45817.072081
00:50:28 (24807): called boinc_finish(0)

</stderr_txt>
]]>

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