Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
12:54:50 (1616279): wrapper (7.7.26015): starting
12:54:50 (1616279): wrapper: running run_atlas (--nthreads 12)
[2026-03-20 12:54:50] Arguments: --nthreads 12
[2026-03-20 12:54:50] Threads: 12
[2026-03-20 12:54:50] Checking for CVMFS
[2026-03-20 12:54:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-20 12:54:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-20 12:54:50] Running cvmfs_config stat atlas.cern.ch
[2026-03-20 12:54:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-20 12:54:50] 2.12.7.0 1392863 304 52988 157508 3 188 3186653 4194304 2742 130560 0 649351 99.994 13943 3106 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2026-03-20 12:54:50] CVMFS is ok
[2026-03-20 12:54:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-20 12:54:50] Checking for apptainer binary...
[2026-03-20 12:54:50] apptainer is not installed, using version from CVMFS
[2026-03-20 12:54:50] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-20 12:54:51] Trebeth
[2026-03-20 12:54:51] apptainer works
[2026-03-20 12:54:51] Set ATHENA_PROC_NUMBER=12
[2026-03-20 12:54:51] Set ATHENA_CORE_NUMBER=12
[2026-03-20 12:54:51] Starting ATLAS job with PandaID=7058951342
[2026-03-20 12:54:51] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-20 15:34:23]  *** The last 200 lines of the pilot log: ***
[2026-03-20 15:34:23] 2026-03-20 19:33:22,860 | INFO     | extracted standard memory fields from prmon json
[2026-03-20 15:34:23] 2026-03-20 19:33:22,861 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-20 15:34:23] 2026-03-20 19:33:22,861 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-20 15:34:23] 2026-03-20 19:33:22,861 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-20 15:34:23] 2026-03-20 19:33:22,864 | INFO     | fitting pss+swap vs Time
[2026-03-20 15:34:23] 2026-03-20 19:33:22,864 | INFO     | sum of square deviations: 1177156955.0
[2026-03-20 15:34:23] 2026-03-20 19:33:22,865 | INFO     | sum of deviations: 31242390984.000008
[2026-03-20 15:34:23] 2026-03-20 19:33:22,865 | INFO     | mean x: 1774030454.5
[2026-03-20 15:34:23] 2026-03-20 19:33:22,865 | INFO     | mean y: 2619644.769230769
[2026-03-20 15:34:23] 2026-03-20 19:33:22,866 | INFO     | intersect: -47081121263.01161
[2026-03-20 15:34:23] 2026-03-20 19:33:22,866 | INFO     | chi2: 2.6689942300641962
[2026-03-20 15:34:23] 2026-03-20 19:33:22,866 | INFO     | sum of square deviations: 1067554900.0
[2026-03-20 15:34:23] 2026-03-20 19:33:22,867 | INFO     | sum of deviations: 41108315898.0
[2026-03-20 15:34:23] 2026-03-20 19:33:22,867 | INFO     | mean x: 1774030302.0
[2026-03-20 15:34:23] 2026-03-20 19:33:22,867 | INFO     | mean y: 2632965.715231788
[2026-03-20 15:34:23] 2026-03-20 19:33:22,867 | INFO     | intersect: -68309917580.62233
[2026-03-20 15:34:23] 2026-03-20 19:33:22,868 | INFO     | chi2: 1.8763098741042945
[2026-03-20 15:34:23] 2026-03-20 19:33:22,868 | INFO     | current chi2=1.8763098741042945 (change=29.699740337798918 %)
[2026-03-20 15:34:23] 2026-03-20 19:33:22,868 | INFO     | sum of square deviations: 964976232.5
[2026-03-20 15:34:23] 2026-03-20 19:33:22,869 | INFO     | sum of deviations: 39590324096.5
[2026-03-20 15:34:23] 2026-03-20 19:33:22,869 | INFO     | mean x: 1774030149.5
[2026-03-20 15:34:23] 2026-03-20 19:33:22,869 | INFO     | mean y: 2630707.9520547944
[2026-03-20 15:34:23] 2026-03-20 19:33:22,869 | INFO     | intersect: -72780953187.90036
[2026-03-20 15:34:23] 2026-03-20 19:33:22,870 | INFO     | chi2: 1.8761419253443112
[2026-03-20 15:34:23] 2026-03-20 19:33:22,870 | INFO     | current chi2=1.8761419253443112 (change=0.008951014024985961 %)
[2026-03-20 15:34:23] 2026-03-20 19:33:22,870 | INFO     | right removable region: 145
[2026-03-20 15:34:23] 2026-03-20 19:33:22,870 | INFO     | sum of square deviations: 1067554900.0
[2026-03-20 15:34:23] 2026-03-20 19:33:22,871 | INFO     | sum of deviations: -477238685.0000019
[2026-03-20 15:34:23] 2026-03-20 19:33:22,871 | INFO     | mean x: 1774030607.0
[2026-03-20 15:34:23] 2026-03-20 19:33:22,871 | INFO     | mean y: 2663332.794701987
[2026-03-20 15:34:23] 2026-03-20 19:33:22,871 | INFO     | intersect: 795724218.0329554
[2026-03-20 15:34:23] 2026-03-20 19:33:22,872 | INFO     | chi2: 0.9063832242531742
[2026-03-20 15:34:23] 2026-03-20 19:33:22,872 | INFO     | current chi2=0.9063832242531742 (change=66.04027037438094 %)
[2026-03-20 15:34:23] 2026-03-20 19:33:22,872 | INFO     | sum of square deviations: 964976232.5
[2026-03-20 15:34:23] 2026-03-20 19:33:22,873 | INFO     | sum of deviations: -8142139486.5
[2026-03-20 15:34:23] 2026-03-20 19:33:22,873 | INFO     | mean x: 1774030759.5
[2026-03-20 15:34:23] 2026-03-20 19:33:22,873 | INFO     | mean y: 2674730.7328767125
[2026-03-20 15:34:23] 2026-03-20 19:33:22,873 | INFO     | intersect: 14971339668.488775
[2026-03-20 15:34:23] 2026-03-20 19:33:22,873 | INFO     | chi2: 0.8301488333087096
[2026-03-20 15:34:23] 2026-03-20 19:33:22,874 | INFO     | current chi2=0.8301488333087096 (change=8.410834281192582 %)
[2026-03-20 15:34:23] 2026-03-20 19:33:22,874 | INFO     | left removable region: 20
[2026-03-20 15:34:23] 2026-03-20 19:33:22,874 | INFO     | sum of square deviations: 605592750.0
[2026-03-20 15:34:23] 2026-03-20 19:33:22,875 | INFO     | sum of deviations: 2803632590.0
[2026-03-20 15:34:23] 2026-03-20 19:33:22,875 | INFO     | mean x: 1774030729.0
[2026-03-20 15:34:23] 2026-03-20 19:33:22,875 | INFO     | mean y: 2689454.04
[2026-03-20 15:34:23] 2026-03-20 19:33:22,875 | INFO     | intersect: -8210305776.642431
[2026-03-20 15:34:23] 2026-03-20 19:33:22,875 | INFO     | chi2: 0.00041427906335059493
[2026-03-20 15:34:23] 2026-03-20 19:33:22,875 | INFO     | current memory leak: 4.63 B/s (using 125 data points, chi2=0.00)
[2026-03-20 15:34:23] 2026-03-20 19:33:22,876 | INFO     | could have reported an average CPU frequency of 2426 MHz (9 samples)
[2026-03-20 15:34:23] 2026-03-20 19:33:22,876 | INFO     | ..............................
[2026-03-20 15:34:23] 2026-03-20 19:33:22,876 | INFO     | . Timing measurements:
[2026-03-20 15:34:23] 2026-03-20 19:33:22,876 | INFO     | . get job = 0 s
[2026-03-20 15:34:23] 2026-03-20 19:33:22,876 | INFO     | . initial setup = 5 s
[2026-03-20 15:34:23] 2026-03-20 19:33:22,876 | INFO     | . payload setup = 8 s
[2026-03-20 15:34:23] 2026-03-20 19:33:22,876 | INFO     | . stage-in = 0 s
[2026-03-20 15:34:23] 2026-03-20 19:33:22,876 | INFO     | . payload execution = 9472 s
[2026-03-20 15:34:23] 2026-03-20 19:33:22,876 | INFO     | . stage-out = 0 s
[2026-03-20 15:34:23] 2026-03-20 19:33:22,877 | INFO     | . log creation = 0 s
[2026-03-20 15:34:23] 2026-03-20 19:33:22,877 | INFO     | ..............................
[2026-03-20 15:34:23] 2026-03-20 19:33:22,967 | INFO     | 
[2026-03-20 15:34:23] 2026-03-20 19:33:22,967 | INFO     | job summary report
[2026-03-20 15:34:23] 2026-03-20 19:33:22,967 | INFO     | --------------------------------------------------
[2026-03-20 15:34:23] 2026-03-20 19:33:22,968 | INFO     | PanDA job id: 7058951342
[2026-03-20 15:34:23] 2026-03-20 19:33:22,968 | INFO     | task id: 49176206
[2026-03-20 15:34:23] 2026-03-20 19:33:22,968 | INFO     | errors: (none)
[2026-03-20 15:34:23] 2026-03-20 19:33:22,968 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-20 15:34:23] 2026-03-20 19:33:22,968 | INFO     | pilot state: finished 
[2026-03-20 15:34:23] 2026-03-20 19:33:22,968 | INFO     | transexitcode: 0
[2026-03-20 15:34:23] 2026-03-20 19:33:22,968 | INFO     | exeerrorcode: 0
[2026-03-20 15:34:23] 2026-03-20 19:33:22,968 | INFO     | exeerrordiag: 
[2026-03-20 15:34:23] 2026-03-20 19:33:22,968 | INFO     | exitcode: 0
[2026-03-20 15:34:23] 2026-03-20 19:33:22,968 | INFO     | exitmsg: OK
[2026-03-20 15:34:23] 2026-03-20 19:33:22,968 | INFO     | cpuconsumptiontime: 105235 s
[2026-03-20 15:34:23] 2026-03-20 19:33:22,969 | INFO     | nevents: 400
[2026-03-20 15:34:23] 2026-03-20 19:33:22,969 | INFO     | neventsw: 0
[2026-03-20 15:34:23] 2026-03-20 19:33:22,969 | INFO     | pid: 1625418
[2026-03-20 15:34:23] 2026-03-20 19:33:22,969 | INFO     | pgrp: 1625418
[2026-03-20 15:34:23] 2026-03-20 19:33:22,969 | INFO     | corecount: 12
[2026-03-20 15:34:23] 2026-03-20 19:33:22,969 | INFO     | event service: False
[2026-03-20 15:34:23] 2026-03-20 19:33:22,969 | INFO     | sizes: {0: 2279736, 1: 2280196, 12: 2280196, 9484: 2308665, 9485: 2317677, 9487: 2318119}
[2026-03-20 15:34:23] 2026-03-20 19:33:22,969 | INFO     | --------------------------------------------------
[2026-03-20 15:34:23] 2026-03-20 19:33:22,969 | INFO     | 
[2026-03-20 15:34:23] 2026-03-20 19:33:22,969 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2026-03-20 15:34:23] 2026-03-20 19:33:22,990 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-20 15:34:23] 2026-03-20 19:33:22,990 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-20 15:34:23] 2026-03-20 19:33:22,990 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-20 15:34:23] 2026-03-20 19:33:22,991 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-20 15:34:23] 2026-03-20 19:33:22,991 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-20 15:34:23] 2026-03-20 19:33:22,991 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-20 15:34:23] 2026-03-20 19:33:22,991 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-20 15:34:23] 2026-03-20 19:33:22,991 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-20 15:34:23] 2026-03-20 19:33:22,991 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-20 15:34:23] 2026-03-20 19:33:22,991 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-20 15:34:23] 2026-03-20 19:33:22,991 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-20 15:34:23] 2026-03-20 19:33:22,991 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-20 15:34:23] 2026-03-20 19:33:22,991 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-20 15:34:23] 2026-03-20 19:33:22,992 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-20 15:34:23] 2026-03-20 19:33:22,992 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-20 15:34:23] 2026-03-20 19:33:22,992 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-20 15:34:23] 2026-03-20 19:33:22,992 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-20 15:34:23] 2026-03-20 19:33:22,992 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-20 15:34:23] 2026-03-20 19:33:22,992 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-20 15:34:23] 2026-03-20 19:33:22,992 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-20 15:34:23] 2026-03-20 19:33:22,992 | INFO     | job 7058951342 has completed (purged errors)
[2026-03-20 15:34:23] 2026-03-20 19:33:22,993 | INFO     | overall cleanup function is called
[2026-03-20 15:34:23] 2026-03-20 19:33:24,001 | INFO     | --- collectZombieJob: --- 10, [1625418]
[2026-03-20 15:34:23] 2026-03-20 19:33:24,001 | INFO     | zombie collector waiting for pid 1625418
[2026-03-20 15:34:23] 2026-03-20 19:33:24,001 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-20 15:34:23] 2026-03-20 19:33:24,002 | INFO     | collected zombie processes
[2026-03-20 15:34:23] 2026-03-20 19:33:24,002 | INFO     | will attempt to kill all subprocesses of pid=1625418
[2026-03-20 15:34:23] 2026-03-20 19:33:24,148 | INFO     | process IDs to be killed: [1625418] (in reverse order)
[2026-03-20 15:34:23] 2026-03-20 19:33:24,196 | WARNING  | found no corresponding commands to process id(s)
[2026-03-20 15:34:23] 2026-03-20 19:33:24,197 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-20 15:34:23] 2026-03-20 19:33:24,204 | INFO     | did not find any defunct processes belonging to 1625418
[2026-03-20 15:34:23] 2026-03-20 19:33:24,209 | INFO     | did not find any defunct processes belonging to 1625418
[2026-03-20 15:34:23] 2026-03-20 19:33:24,210 | INFO     | ready for new job
[2026-03-20 15:34:23] 2026-03-20 19:33:24,210 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-20 15:34:23] 2026-03-20 19:33:24,212 | INFO     | **************************************
[2026-03-20 15:34:23] 2026-03-20 19:33:24,212 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-20 15:34:23] 2026-03-20 19:33:24,212 | INFO     | **************************************
[2026-03-20 15:34:23] 2026-03-20 19:33:24,212 | INFO     | 
[2026-03-20 15:34:23] 2026-03-20 19:33:24,215 | INFO     | architecture information:
[2026-03-20 15:34:23] 2026-03-20 19:33:24,215 | INFO     | executing command: cat /etc/os-release
[2026-03-20 15:34:23] 2026-03-20 19:33:24,224 | INFO     | cat /etc/os-release:
[2026-03-20 15:34:23] NAME="CentOS Linux"
[2026-03-20 15:34:23] VERSION="7 (Core)"
[2026-03-20 15:34:23] ID="centos"
[2026-03-20 15:34:23] ID_LIKE="rhel fedora"
[2026-03-20 15:34:23] VERSION_ID="7"
[2026-03-20 15:34:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-20 15:34:23] ANSI_COLOR="0;31"
[2026-03-20 15:34:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-20 15:34:23] HOME_URL="https://www.centos.org/"
[2026-03-20 15:34:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-20 15:34:23] 
[2026-03-20 15:34:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-20 15:34:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-20 15:34:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-20 15:34:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-20 15:34:23] 
[2026-03-20 15:34:23] 2026-03-20 19:33:24,224 | INFO     | **************************************
[2026-03-20 15:34:23] 2026-03-20 19:33:24,726 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2026-03-20 15:34:23] 2026-03-20 19:33:24,741 | INFO     | sufficient remaining disk space (404950614016 B)
[2026-03-20 15:34:23] 2026-03-20 19:33:24,742 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-20 15:34:23] 2026-03-20 19:33:24,742 | INFO     | current server update state: UPDATING_FINAL
[2026-03-20 15:34:23] 2026-03-20 19:33:24,742 | INFO     | update_server=False
[2026-03-20 15:34:23] 2026-03-20 19:33:24,742 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-20 15:34:23] 2026-03-20 19:33:24,743 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-20 15:34:23] 2026-03-20 19:33:24,743 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-20 15:34:23] 2026-03-20 19:33:25,080 | INFO     | job.realtimelogging is not enabled
[2026-03-20 15:34:23] 2026-03-20 19:33:25,297 | INFO     | all payload control threads have been joined
[2026-03-20 15:34:23] 2026-03-20 19:33:25,601 | WARNING  | process 1625418 can no longer be monitored (due to stat problems) - aborting
[2026-03-20 15:34:23] 2026-03-20 19:33:25,748 | INFO     | [job] retrieve thread has finished
[2026-03-20 15:34:23] 2026-03-20 19:33:25,748 | INFO     | [job] queue monitor thread has finished
[2026-03-20 15:34:23] 2026-03-20 19:33:25,800 | INFO     | using path: /var/lib/boinc-client/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-03-20 15:34:23] 2026-03-20 19:33:25,836 | INFO     | all data control threads have been joined
[2026-03-20 15:34:23] 2026-03-20 19:33:26,050 | INFO     | number of running child processes to parent process 1625418: 1
[2026-03-20 15:34:23] 2026-03-20 19:33:26,050 | INFO     | maximum number of monitored processes: 6
[2026-03-20 15:34:23] 2026-03-20 19:33:26,051 | INFO     | aborting job monitoring since job object (job id=7058951342) has expired
[2026-03-20 15:34:23] 2026-03-20 19:33:26,051 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-20 15:34:23] 2026-03-20 19:33:26,051 | INFO     | will abort loop
[2026-03-20 15:34:23] 2026-03-20 19:33:26,074 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-20 15:34:23] 2026-03-20 19:33:26,085 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-20 15:34:23] 2026-03-20 19:33:26,141 | INFO     | all job control threads have been joined
[2026-03-20 15:34:23] 2026-03-20 19:33:26,298 | INFO     | [payload] control thread has finished
[2026-03-20 15:34:23] 2026-03-20 19:33:26,580 | INFO     | [payload] execute_payloads thread has finished
[2026-03-20 15:34:23] 2026-03-20 19:33:26,581 | INFO     | [job] validate thread has finished
[2026-03-20 15:34:23] 2026-03-20 19:33:26,739 | INFO     | [job] create_data_payload thread has finished
[2026-03-20 15:34:23] 2026-03-20 19:33:26,743 | INFO     | [payload] validate_pre thread has finished
[2026-03-20 15:34:23] 2026-03-20 19:33:26,841 | INFO     | [data] control thread has finished
[2026-03-20 15:34:23] 2026-03-20 19:33:27,021 | INFO     | [data] copytool_in thread has finished
[2026-03-20 15:34:23] 2026-03-20 19:33:27,034 | INFO     | [payload] validate_post thread has finished
[2026-03-20 15:34:23] 2026-03-20 19:33:27,056 | INFO     | [job] job monitor thread has finished
[2026-03-20 15:34:23] 2026-03-20 19:33:27,147 | INFO     | [job] control thread has finished
[2026-03-20 15:34:23] 2026-03-20 19:33:27,299 | INFO     | [payload] failed_post thread has finished
[2026-03-20 15:34:23] 2026-03-20 19:33:28,079 | INFO     | [data] copytool_out thread has finished
[2026-03-20 15:34:23] 2026-03-20 19:33:28,748 | INFO     | [data] queue_monitor thread has finished
[2026-03-20 15:34:23] 2026-03-20 19:33:55,260 | INFO     | PID=1620479 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-20 15:34:23] 2026-03-20 19:33:55,260 | INFO     | .. there are 4 such processes running
[2026-03-20 15:34:23] 2026-03-20 19:33:55,261 | INFO     | found 0 job(s) in 20 queues
[2026-03-20 15:34:23] 2026-03-20 19:33:55,261 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-20 15:34:23] 2026-03-20 19:33:55,261 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-20 15:34:23] 2026-03-20 19:34:17,735 | INFO     | [monitor] cgroup control has ended
[2026-03-20 15:34:23] 2026-03-20 19:34:18,763 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 128123568772928)>', '<ExcThread(monitor, started 128122900969216)>']
[2026-03-20 15:34:23] 2026-03-20 19:34:19,367 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-20 15:34:23] 2026-03-20 19:34:19,368 | INFO     | [monitor] control thread has ended
[2026-03-20 15:34:23] 2026-03-20 19:34:23,764 | INFO     | all workflow threads have been joined
[2026-03-20 15:34:23] 2026-03-20 19:34:23,764 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-20 15:34:23] 2026-03-20 19:34:23,764 | INFO     | traces error code: 0
[2026-03-20 15:34:23] 2026-03-20 19:34:23,764 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-20 15:34:23] 2026-03-20 19:34:23,862 [wrapper] ==== pilot stdout END ====
[2026-03-20 15:34:23] 2026-03-20 19:34:23,864 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-20 15:34:23] 2026-03-20 19:34:23,867 [wrapper] pilotpid: 1620479
[2026-03-20 15:34:23] 2026-03-20 19:34:23,869 [wrapper] Pilot exit status: 0
[2026-03-20 15:34:23] 2026-03-20 19:34:23,877 [wrapper] pandaids: 7058951342
[2026-03-20 15:34:23] 2026-03-20 19:34:23,924 [wrapper] cleanup supervisor_pilot 1706376 1620480
[2026-03-20 15:34:23] 2026-03-20 19:34:23,927 [wrapper] Test setup, not cleaning
[2026-03-20 15:34:23] 2026-03-20 19:34:23,929 [wrapper] apfmon messages muted
[2026-03-20 15:34:23] 2026-03-20 19:34:23,931 [wrapper] ==== wrapper stdout END ====
[2026-03-20 15:34:23] 2026-03-20 19:34:23,933 [wrapper] ==== wrapper stderr END ====
[2026-03-20 15:34:23]  *** Error codes and diagnostics ***
[2026-03-20 15:34:23]     "exeErrorCode": 0,
[2026-03-20 15:34:23]     "exeErrorDiag": "",
[2026-03-20 15:34:23]     "pilotErrorCode": 0,
[2026-03-20 15:34:23]     "pilotErrorDiag": "",
[2026-03-20 15:34:23]  *** Listing of results directory ***
[2026-03-20 15:34:23] total 487184
[2026-03-20 15:34:23] -rw-r--r-- 1 boinc boinc      5111 Mar 18 09:20 queuedata.json
[2026-03-20 15:34:23] -rw-r--r-- 1 boinc boinc    585013 Mar 18 09:20 pilot3.tar.gz
[2026-03-20 15:34:23] -rwx------ 1 boinc boinc     36322 Mar 18 09:20 runpilot2-wrapper.sh
[2026-03-20 15:34:23] -rw-r--r-- 1 boinc boinc       100 Mar 20 12:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-20 15:34:23] -rwxr-xr-x 1 boinc boinc      7986 Mar 20 12:54 run_atlas
[2026-03-20 15:34:23] -rw-r--r-- 1 boinc boinc       105 Mar 20 12:54 job.xml
[2026-03-20 15:34:23] -rw-r--r-- 2 boinc boinc 245456271 Mar 20 12:54 EVNT.49133006._000016.pool.root.1
[2026-03-20 15:34:23] -rw-r--r-- 2 boinc boinc     15845 Mar 20 12:54 start_atlas.sh
[2026-03-20 15:34:23] drwxrwx--x 2 boinc boinc      4096 Mar 20 12:54 shared
[2026-03-20 15:34:23] -rw-r--r-- 2 boinc boinc    597537 Mar 20 12:54 input.tar.gz
[2026-03-20 15:34:23] -rw-r--r-- 1 boinc boinc      7688 Mar 20 12:54 init_data.xml
[2026-03-20 15:34:23] -rw-r--r-- 1 boinc boinc         0 Mar 20 12:54 boinc_lockfile
[2026-03-20 15:34:23] -rw-r--r-- 1 boinc boinc      2583 Mar 20 12:54 pandaJob.out
[2026-03-20 15:34:23] -rw------- 1 boinc boinc        50 Mar 20 12:54 setup.sh.local
[2026-03-20 15:34:23] -rw------- 1 boinc boinc   1010639 Mar 20 12:54 agis_schedconf.cvmfs.json
[2026-03-20 15:34:23] -rw------- 1 boinc boinc   1511579 Mar 20 12:54 agis_ddmendpoints.agis.ALL.json
[2026-03-20 15:34:23] -rw------- 1 boinc boinc       430 Mar 20 12:55 workernode_map.json
[2026-03-20 15:34:23] drwx------ 5 boinc boinc      4096 Mar 20 12:55 pilot3
[2026-03-20 15:34:23] -rw------- 1 boinc boinc 245788295 Mar 20 15:32 HITS.49176206._000400.pool.root.1
[2026-03-20 15:34:23] -rw-r--r-- 1 boinc boinc       530 Mar 20 15:32 boinc_task_state.xml
[2026-03-20 15:34:23] -rw------- 1 boinc boinc      1029 Mar 20 15:33 memory_monitor_summary.json
[2026-03-20 15:34:23] -rw------- 1 boinc boinc    473428 Mar 20 15:33 log.49176206._000400.job.log.tgz.1
[2026-03-20 15:34:23] -rw------- 1 boinc boinc      6328 Mar 20 15:33 heartbeat.json
[2026-03-20 15:34:23] -rw------- 1 boinc boinc        95 Mar 20 15:33 pilot_heartbeat.json
[2026-03-20 15:34:23] -rw-r--r-- 1 boinc boinc        28 Mar 20 15:34 wrapper_checkpoint.txt
[2026-03-20 15:34:23] -rw-r--r-- 1 boinc boinc      8192 Mar 20 15:34 boinc_mmap_file
[2026-03-20 15:34:23] -rw------- 1 boinc boinc      5427 Mar 20 15:34 pilotlog.txt
[2026-03-20 15:34:23] -rw------- 1 boinc boinc   1368767 Mar 20 15:34 log.49176206._000400.job.log.1
[2026-03-20 15:34:23] -rw------- 1 boinc boinc       357 Mar 20 15:34 output.list
[2026-03-20 15:34:23] -rw-r--r-- 1 boinc boinc       620 Mar 20 15:34 runtime_log
[2026-03-20 15:34:23] -rw------- 1 boinc boinc   1863680 Mar 20 15:34 result.tar.gz
[2026-03-20 15:34:23] -rw-r--r-- 1 boinc boinc      9403 Mar 20 15:34 runtime_log.err
[2026-03-20 15:34:23] -rw------- 1 boinc boinc       651 Mar 20 15:34 1awLDmI05M9n9Rq4apOajLDm4fhM0noT9bVooX4SDmIAzLDm3QiA7m.diag
[2026-03-20 15:34:23] -rw-r--r-- 1 boinc boinc     20770 Mar 20 15:34 stderr.txt
[2026-03-20 15:34:24] HITS file was successfully produced:
[2026-03-20 15:34:24] -rw------- 1 boinc boinc 245788295 Mar 20 15:32 shared/HITS.pool.root.1
[2026-03-20 15:34:24]  *** Contents of shared directory: ***
[2026-03-20 15:34:24] total 482160
[2026-03-20 15:34:24] -rw-r--r-- 2 boinc boinc 245456271 Mar 20 12:54 ATLAS.root_0
[2026-03-20 15:34:24] -rw-r--r-- 2 boinc boinc     15845 Mar 20 12:54 start_atlas.sh
[2026-03-20 15:34:24] -rw-r--r-- 2 boinc boinc    597537 Mar 20 12:54 input.tar.gz
[2026-03-20 15:34:24] -rw------- 1 boinc boinc 245788295 Mar 20 15:32 HITS.pool.root.1
[2026-03-20 15:34:24] -rw------- 1 boinc boinc   1863680 Mar 20 15:34 result.tar.gz
15:34:25 (1616279): run_atlas exited; CPU time 105477.176508
15:34:25 (1616279): called boinc_finish(0)

</stderr_txt>
]]>

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