Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:22:50 (492978): wrapper (7.7.26015): starting
15:22:50 (492978): wrapper: running run_atlas (--nthreads 12)
[2026-03-19 15:22:50] Arguments: --nthreads 12
[2026-03-19 15:22:50] Threads: 12
[2026-03-19 15:22:50] Checking for CVMFS
[2026-03-19 15:22:50] No cvmfs_config command found, will try listing directly
[2026-03-19 15:22:50] CVMFS is ok
[2026-03-19 15:22:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-19 15:22:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-19 15:22:50] Further information can be found at the LHC@home message board.
[2026-03-19 15:22:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-19 15:22:50] Checking for apptainer binary...
[2026-03-19 15:22:50] which: no apptainer in ((null))
[2026-03-19 15:22:50] apptainer is not installed, using version from CVMFS
[2026-03-19 15:22:50] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-19 15:22:50] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot72/slots/2/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz
[2026-03-19 15:22:50] apptainer works
[2026-03-19 15:22:50] Set ATHENA_PROC_NUMBER=12
[2026-03-19 15:22:50] Set ATHENA_CORE_NUMBER=12
[2026-03-19 15:22:50] Starting ATLAS job with PandaID=7058647642
[2026-03-19 15:22:50] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot72/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-19 16:08:11]  *** The last 200 lines of the pilot log: ***
[2026-03-19 16:08:11]  is_tar=False
[2026-03-19 16:08:11]  lfn=log.49191318._000022.job.log.tgz.1
[2026-03-19 16:08:11]  mtime=0
[2026-03-19 16:08:11]  protocol_id=None
[2026-03-19 16:08:11]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-19 16:08:11]  replicas=None
[2026-03-19 16:08:11]  scope=mc23_13p6TeV
[2026-03-19 16:08:11]  status=None
[2026-03-19 16:08:11]  status_code=0
[2026-03-19 16:08:11]  storage_token=
[2026-03-19 16:08:11]  surl=/var/lib/boinc/var/slot72/slots/2/PanDA_Pilot-7058647642/log.49191318._000022.job.log.tgz.1
[2026-03-19 16:08:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/23/75/log.49191318._000022.job.log.tgz.1
[2026-03-19 16:08:11]  workdir=None
[2026-03-19 16:08:11] ]
[2026-03-19 16:08:11] 2026-03-19 15:07:18,346 | INFO     | transferring file log.49191318._000022.job.log.tgz.1 from /var/lib/boinc/var/slot72/slots/2/PanDA_Pilot-7058647642/log.49191318._000022.job.log.tgz.1 to /var/lib/b
[2026-03-19 16:08:11] 2026-03-19 15:07:18,346 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot72/slots/2/PanDA_Pilot-7058647642/log.49191318._000022.job.log.tgz.1 /var/lib/boinc/var/slot72/slots/2/lo
[2026-03-19 16:08:11] 2026-03-19 15:07:18,363 | INFO     | adding to output.list: log.49191318._000022.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/23/75/log.49191318._000022.job.log.tg
[2026-03-19 16:08:11] 2026-03-19 15:07:18,364 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-19 16:08:11] 2026-03-19 15:07:18,364 | INFO     | summary of transferred files:
[2026-03-19 16:08:11] 2026-03-19 15:07:18,364 | INFO     |  -- lfn=log.49191318._000022.job.log.tgz.1, status_code=0, status=transferred
[2026-03-19 16:08:11] 2026-03-19 15:07:18,364 | INFO     | stage-out finished correctly
[2026-03-19 16:08:11] 2026-03-19 15:07:19,921 | INFO     | monitor loop #201: job 0:7058647642 is in state 'finished'
[2026-03-19 16:08:11] 2026-03-19 15:07:19,921 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-19 16:08:11] 2026-03-19 15:07:20,166 | INFO     | time since job start (2660s) is within the limit (345600.0s)
[2026-03-19 16:08:11] 2026-03-19 15:07:20,250 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-19 16:08:11] 2026-03-19 15:07:22,172 | INFO     | time since job start (2662s) is within the limit (345600.0s)
[2026-03-19 16:08:11] 2026-03-19 15:07:22,424 | INFO     | monitor loop #202: job 0:7058647642 is in state 'finished'
[2026-03-19 16:08:11] 2026-03-19 15:07:22,424 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-19 16:08:11] 2026-03-19 15:07:23,192 | INFO     | job 7058647642 has state=finished
[2026-03-19 16:08:11] 2026-03-19 15:07:23,192 | INFO     | preparing for final server update for job 7058647642 in state='finished'
[2026-03-19 16:08:11] 2026-03-19 15:07:23,193 | INFO     | reading metadata from: /var/lib/boinc/var/slot72/slots/2/PanDA_Pilot-7058647642/jobReport.json
[2026-03-19 16:08:11] 2026-03-19 15:07:23,194 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot72/slots/2/workernode_map.json
[2026-03-19 16:08:11] 2026-03-19 15:07:23,194 | INFO     | this job has now completed (state=finished)
[2026-03-19 16:08:11] 2026-03-19 15:07:23,194 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-19 16:08:11] 2026-03-19 15:07:23,194 | INFO     | log transfer has been attempted: DONE
[2026-03-19 16:08:11] 2026-03-19 15:07:23,194 | INFO     | job 7058647642 has finished - writing final server update
[2026-03-19 16:08:11] 2026-03-19 15:07:23,195 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3870688/.job.ad'
[2026-03-19 16:08:11] 2026-03-19 15:07:23,195 | INFO     | total number of processed events: 400 (read)
[2026-03-19 16:08:11] 2026-03-19 15:07:23,205 | INFO     | using path: /var/lib/boinc/var/slot72/slots/2/PanDA_Pilot-7058647642/memory_monitor_summary.json (trf name=prmon)
[2026-03-19 16:08:11] 2026-03-19 15:07:23,205 | INFO     | extracted standard info from prmon json
[2026-03-19 16:08:11] 2026-03-19 15:07:23,205 | INFO     | extracted standard memory fields from prmon json
[2026-03-19 16:08:11] 2026-03-19 15:07:23,205 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-19 16:08:11] 2026-03-19 15:07:23,205 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-19 16:08:11] 2026-03-19 15:07:23,205 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-19 16:08:11] 2026-03-19 15:07:23,206 | INFO     | fitting pss+swap vs Time
[2026-03-19 16:08:11] 2026-03-19 15:07:23,206 | INFO     | sum of square deviations: 15695178.0
[2026-03-19 16:08:11] 2026-03-19 15:07:23,206 | INFO     | sum of deviations: 57821777.99999999
[2026-03-19 16:08:11] 2026-03-19 15:07:23,206 | INFO     | mean x: 1773931604.0
[2026-03-19 16:08:11] 2026-03-19 15:07:23,206 | INFO     | mean y: 2769146.6756756757
[2026-03-19 16:08:11] 2026-03-19 15:07:23,206 | INFO     | intersect: -6532478774.289088
[2026-03-19 16:08:11] 2026-03-19 15:07:23,206 | INFO     | chi2: 0.00016757462672757428
[2026-03-19 16:08:11] 2026-03-19 15:07:23,206 | INFO     | current memory leak: 3.68 B/s (using 37 data points, chi2=0.00)
[2026-03-19 16:08:11] 2026-03-19 15:07:23,206 | INFO     | could have reported an average CPU frequency of 3619 MHz (5 samples)
[2026-03-19 16:08:11] 2026-03-19 15:07:23,206 | INFO     | ..............................
[2026-03-19 16:08:11] 2026-03-19 15:07:23,206 | INFO     | . Timing measurements:
[2026-03-19 16:08:11] 2026-03-19 15:07:23,206 | INFO     | . get job = 0 s
[2026-03-19 16:08:11] 2026-03-19 15:07:23,206 | INFO     | . initial setup = 4 s
[2026-03-19 16:08:11] 2026-03-19 15:07:23,206 | INFO     | . payload setup = 5 s
[2026-03-19 16:08:11] 2026-03-19 15:07:23,206 | INFO     | . stage-in = 0 s
[2026-03-19 16:08:11] 2026-03-19 15:07:23,206 | INFO     | . payload execution = 2634 s
[2026-03-19 16:08:11] 2026-03-19 15:07:23,206 | INFO     | . stage-out = 0 s
[2026-03-19 16:08:11] 2026-03-19 15:07:23,206 | INFO     | . log creation = 0 s
[2026-03-19 16:08:11] 2026-03-19 15:07:23,206 | INFO     | ..............................
[2026-03-19 16:08:11] 2026-03-19 15:07:23,233 | INFO     | 
[2026-03-19 16:08:11] 2026-03-19 15:07:23,234 | INFO     | job summary report
[2026-03-19 16:08:11] 2026-03-19 15:07:23,234 | INFO     | --------------------------------------------------
[2026-03-19 16:08:11] 2026-03-19 15:07:23,234 | INFO     | PanDA job id: 7058647642
[2026-03-19 16:08:11] 2026-03-19 15:07:23,234 | INFO     | task id: 49191318
[2026-03-19 16:08:11] 2026-03-19 15:07:23,234 | INFO     | errors: (none)
[2026-03-19 16:08:11] 2026-03-19 15:07:23,234 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-19 16:08:11] 2026-03-19 15:07:23,234 | INFO     | pilot state: finished 
[2026-03-19 16:08:11] 2026-03-19 15:07:23,234 | INFO     | transexitcode: 0
[2026-03-19 16:08:11] 2026-03-19 15:07:23,234 | INFO     | exeerrorcode: 0
[2026-03-19 16:08:11] 2026-03-19 15:07:23,234 | INFO     | exeerrordiag: 
[2026-03-19 16:08:11] 2026-03-19 15:07:23,234 | INFO     | exitcode: 0
[2026-03-19 16:08:11] 2026-03-19 15:07:23,234 | INFO     | exitmsg: OK
[2026-03-19 16:08:11] 2026-03-19 15:07:23,234 | INFO     | cpuconsumptiontime: 29218 s
[2026-03-19 16:08:11] 2026-03-19 15:07:23,234 | INFO     | nevents: 400
[2026-03-19 16:08:11] 2026-03-19 15:07:23,234 | INFO     | neventsw: 0
[2026-03-19 16:08:11] 2026-03-19 15:07:23,234 | INFO     | pid: 503306
[2026-03-19 16:08:11] 2026-03-19 15:07:23,234 | INFO     | pgrp: 503306
[2026-03-19 16:08:11] 2026-03-19 15:07:23,234 | INFO     | corecount: 12
[2026-03-19 16:08:11] 2026-03-19 15:07:23,234 | INFO     | event service: False
[2026-03-19 16:08:11] 2026-03-19 15:07:23,234 | INFO     | sizes: {0: 2280179, 10: 2280179, 2644: 2305435, 2646: 2314455, 2648: 2314511, 2651: 2314737}
[2026-03-19 16:08:11] 2026-03-19 15:07:23,234 | INFO     | --------------------------------------------------
[2026-03-19 16:08:11] 2026-03-19 15:07:23,234 | INFO     | 
[2026-03-19 16:08:11] 2026-03-19 15:07:23,234 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot72/slots/2
[2026-03-19 16:08:11] 2026-03-19 15:07:23,248 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-19 16:08:11] 2026-03-19 15:07:23,249 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-19 16:08:11] 2026-03-19 15:07:23,249 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-19 16:08:11] 2026-03-19 15:07:23,249 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-19 16:08:11] 2026-03-19 15:07:23,249 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-19 16:08:11] 2026-03-19 15:07:23,249 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-19 16:08:11] 2026-03-19 15:07:23,249 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-19 16:08:11] 2026-03-19 15:07:23,249 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-19 16:08:11] 2026-03-19 15:07:23,249 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-19 16:08:11] 2026-03-19 15:07:23,249 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-19 16:08:11] 2026-03-19 15:07:23,249 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-19 16:08:11] 2026-03-19 15:07:23,249 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-19 16:08:11] 2026-03-19 15:07:23,249 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-19 16:08:11] 2026-03-19 15:07:23,249 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-19 16:08:11] 2026-03-19 15:07:23,249 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-19 16:08:11] 2026-03-19 15:07:23,249 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-19 16:08:11] 2026-03-19 15:07:23,249 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-19 16:08:11] 2026-03-19 15:07:23,249 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-19 16:08:11] 2026-03-19 15:07:23,249 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-19 16:08:11] 2026-03-19 15:07:23,249 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-19 16:08:11] 2026-03-19 15:07:23,249 | INFO     | job 7058647642 has completed (purged errors)
[2026-03-19 16:08:11] 2026-03-19 15:07:23,249 | INFO     | overall cleanup function is called
[2026-03-19 16:08:11] 2026-03-19 15:07:24,256 | INFO     | --- collectZombieJob: --- 10, [503306]
[2026-03-19 16:08:11] 2026-03-19 15:07:24,256 | INFO     | zombie collector waiting for pid 503306
[2026-03-19 16:08:11] 2026-03-19 15:07:24,256 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-19 16:08:11] 2026-03-19 15:07:24,257 | INFO     | collected zombie processes
[2026-03-19 16:08:11] 2026-03-19 15:07:24,257 | INFO     | will attempt to kill all subprocesses of pid=503306
[2026-03-19 16:08:11] 2026-03-19 15:07:24,609 | INFO     | process IDs to be killed: [503306] (in reverse order)
[2026-03-19 16:08:11] 2026-03-19 15:07:24,756 | WARNING  | found no corresponding commands to process id(s)
[2026-03-19 16:08:11] 2026-03-19 15:07:24,756 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-19 16:08:11] 2026-03-19 15:07:24,779 | INFO     | did not find any defunct processes belonging to 503306
[2026-03-19 16:08:11] 2026-03-19 15:07:24,801 | INFO     | did not find any defunct processes belonging to 503306
[2026-03-19 16:08:11] 2026-03-19 15:07:24,801 | INFO     | ready for new job
[2026-03-19 16:08:11] 2026-03-19 15:07:24,801 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-19 16:08:11] 2026-03-19 15:07:24,802 | INFO     | **************************************
[2026-03-19 16:08:11] 2026-03-19 15:07:24,802 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-19 16:08:11] 2026-03-19 15:07:24,802 | INFO     | **************************************
[2026-03-19 16:08:11] 2026-03-19 15:07:24,802 | INFO     | 
[2026-03-19 16:08:11] 2026-03-19 15:07:24,808 | INFO     | architecture information:
[2026-03-19 16:08:11] 2026-03-19 15:07:24,808 | INFO     | executing command: cat /etc/os-release
[2026-03-19 16:08:11] 2026-03-19 15:07:24,821 | INFO     | cat /etc/os-release:
[2026-03-19 16:08:11] NAME="CentOS Linux"
[2026-03-19 16:08:11] VERSION="7 (Core)"
[2026-03-19 16:08:11] ID="centos"
[2026-03-19 16:08:11] ID_LIKE="rhel fedora"
[2026-03-19 16:08:11] VERSION_ID="7"
[2026-03-19 16:08:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-19 16:08:11] ANSI_COLOR="0;31"
[2026-03-19 16:08:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-19 16:08:11] HOME_URL="https://www.centos.org/"
[2026-03-19 16:08:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-19 16:08:11] 
[2026-03-19 16:08:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-19 16:08:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-19 16:08:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-19 16:08:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-19 16:08:11] 
[2026-03-19 16:08:11] 2026-03-19 15:07:24,821 | INFO     | **************************************
[2026-03-19 16:08:11] 2026-03-19 15:07:25,323 | INFO     | executing command: df -mP /var/lib/boinc/var/slot72/slots/2
[2026-03-19 16:08:11] 2026-03-19 15:07:25,335 | INFO     | sufficient remaining disk space (263537557504 B)
[2026-03-19 16:08:11] 2026-03-19 15:07:25,336 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-19 16:08:11] 2026-03-19 15:07:25,336 | INFO     | current server update state: UPDATING_FINAL
[2026-03-19 16:08:11] 2026-03-19 15:07:25,336 | INFO     | update_server=False
[2026-03-19 16:08:11] 2026-03-19 15:07:25,336 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-19 16:08:11] 2026-03-19 15:07:25,863 | INFO     | all job control threads have been joined
[2026-03-19 16:08:11] 2026-03-19 15:07:25,929 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-19 16:08:11] 2026-03-19 15:07:25,929 | INFO     | aborting loop
[2026-03-19 16:08:11] 2026-03-19 15:07:26,300 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-19 16:08:11] 2026-03-19 15:07:26,337 | INFO     | [job] retrieve thread has finished
[2026-03-19 16:08:11] 2026-03-19 15:07:26,421 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-19 16:08:11] 2026-03-19 15:07:26,424 | INFO     | all data control threads have been joined
[2026-03-19 16:08:11] 2026-03-19 15:07:26,531 | INFO     | [job] validate thread has finished
[2026-03-19 16:08:11] 2026-03-19 15:07:26,604 | INFO     | [payload] failed_post thread has finished
[2026-03-19 16:08:11] 2026-03-19 15:07:26,738 | INFO     | [job] create_data_payload thread has finished
[2026-03-19 16:08:11] 2026-03-19 15:07:26,772 | INFO     | [payload] validate_pre thread has finished
[2026-03-19 16:08:11] 2026-03-19 15:07:26,836 | INFO     | all payload control threads have been joined
[2026-03-19 16:08:11] 2026-03-19 15:07:26,871 | INFO     | [job] control thread has finished
[2026-03-19 16:08:11] 2026-03-19 15:07:26,935 | INFO     | [job] job monitor thread has finished
[2026-03-19 16:08:11] 2026-03-19 15:07:27,006 | INFO     | [payload] validate_post thread has finished
[2026-03-19 16:08:11] 2026-03-19 15:07:27,051 | INFO     | [data] copytool_in thread has finished
[2026-03-19 16:08:11] 2026-03-19 15:07:27,331 | INFO     | [payload] execute_payloads thread has finished
[2026-03-19 16:08:11] 2026-03-19 15:07:27,429 | INFO     | [data] control thread has finished
[2026-03-19 16:08:11] 2026-03-19 15:07:27,841 | INFO     | [payload] control thread has finished
[2026-03-19 16:08:11] 2026-03-19 15:07:28,243 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-19 16:08:11] 2026-03-19 15:07:28,426 | INFO     | [data] copytool_out thread has finished
[2026-03-19 16:08:11] 2026-03-19 15:07:29,248 | INFO     | [job] queue monitor thread has finished
[2026-03-19 16:08:11] 2026-03-19 15:07:30,306 | INFO     | [data] queue_monitor thread has finished
[2026-03-19 16:08:11] 2026-03-19 15:07:35,870 | INFO     | job.realtimelogging is not enabled
[2026-03-19 16:08:11] 2026-03-19 15:07:36,870 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-19 16:08:11] 2026-03-19 15:07:55,690 | INFO     | PID=497508 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-19 16:08:11] 2026-03-19 15:07:55,690 | INFO     | .. there are 14 such processes running
[2026-03-19 16:08:11] 2026-03-19 15:07:55,690 | INFO     | found 0 job(s) in 20 queues
[2026-03-19 16:08:11] 2026-03-19 15:07:55,690 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-19 16:08:11] 2026-03-19 15:07:55,690 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-19 16:08:11] 2026-03-19 15:07:56,321 [wrapper] supervise_pilot (15 min periods counter: 4)
[2026-03-19 16:08:11] 2026-03-19 15:08:04,638 | INFO     | [monitor] cgroup control has ended
[2026-03-19 16:08:11] 2026-03-19 15:08:06,061 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22796648515392)>', '<ExcThread(monitor, started 22796340025088)>']
[2026-03-19 16:08:11] 2026-03-19 15:08:06,735 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-19 16:08:11] 2026-03-19 15:08:06,735 | INFO     | [monitor] control thread has ended
[2026-03-19 16:08:11] 2026-03-19 15:08:11,086 | INFO     | all workflow threads have been joined
[2026-03-19 16:08:11] 2026-03-19 15:08:11,086 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-19 16:08:11] 2026-03-19 15:08:11,086 | INFO     | traces error code: 0
[2026-03-19 16:08:11] 2026-03-19 15:08:11,086 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-19 16:08:11] 2026-03-19 15:08:11,203 [wrapper] ==== pilot stdout END ====
[2026-03-19 16:08:11] 2026-03-19 15:08:11,206 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-19 16:08:11] 2026-03-19 15:08:11,208 [wrapper] pilotpid: 497508
[2026-03-19 16:08:11] 2026-03-19 15:08:11,210 [wrapper] Pilot exit status: 0
[2026-03-19 16:08:11] 2026-03-19 15:08:11,218 [wrapper] pandaids: 7058647642
[2026-03-19 16:08:11] 2026-03-19 15:08:11,322 [wrapper] cleanup supervisor_pilot  687120 497509
[2026-03-19 16:08:11] 2026-03-19 15:08:11,324 [wrapper] Test setup, not cleaning
[2026-03-19 16:08:11] 2026-03-19 15:08:11,327 [wrapper] apfmon messages muted
[2026-03-19 16:08:11] 2026-03-19 15:08:11,329 [wrapper] ==== wrapper stdout END ====
[2026-03-19 16:08:11] 2026-03-19 15:08:11,331 [wrapper] ==== wrapper stderr END ====
[2026-03-19 16:08:11]  *** Error codes and diagnostics ***
[2026-03-19 16:08:11]     "exeErrorCode": 0,
[2026-03-19 16:08:11]     "exeErrorDiag": "",
[2026-03-19 16:08:11]     "pilotErrorCode": 0,
[2026-03-19 16:08:11]     "pilotErrorDiag": "",
[2026-03-19 16:08:11]  *** Listing of results directory ***
[2026-03-19 16:08:11] total 460912
[2026-03-19 16:08:11] -rwx------. 1 boinc boinc     36322 Mar 18 09:58 runpilot2-wrapper.sh
[2026-03-19 16:08:11] -rw-r--r--. 1 boinc boinc      5111 Mar 18 10:03 queuedata.json
[2026-03-19 16:08:11] -rw-r--r--. 1 boinc boinc    585013 Mar 18 10:03 pilot3.tar.gz
[2026-03-19 16:08:11] -rw-r--r--. 1 boinc boinc       100 Mar 19 15:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-19 16:08:11] -rwxr-xr-x. 1 boinc boinc      7986 Mar 19 15:22 run_atlas
[2026-03-19 16:08:11] -rw-r--r--. 1 boinc boinc       105 Mar 19 15:22 job.xml
[2026-03-19 16:08:11] -rw-r--r--. 2 boinc boinc 249216761 Mar 19 15:22 EVNT.49126557._000001.pool.root.1
[2026-03-19 16:08:11] -rw-r--r--. 1 boinc boinc      6709 Mar 19 15:22 init_data.xml
[2026-03-19 16:08:11] -rw-r--r--. 2 boinc boinc     15845 Mar 19 15:22 start_atlas.sh
[2026-03-19 16:08:11] drwxrwx--x. 2 boinc boinc      4096 Mar 19 15:22 shared
[2026-03-19 16:08:11] -rw-r--r--. 2 boinc boinc    597523 Mar 19 15:22 input.tar.gz
[2026-03-19 16:08:11] -rw-r--r--. 1 boinc boinc         0 Mar 19 15:22 boinc_lockfile
[2026-03-19 16:08:11] -rw-r--r--. 1 boinc boinc      2592 Mar 19 15:22 pandaJob.out
[2026-03-19 16:08:11] -rw-------. 1 boinc boinc   1010732 Mar 19 15:22 agis_schedconf.cvmfs.json
[2026-03-19 16:08:11] -rw-------. 1 boinc boinc   1511579 Mar 19 15:22 agis_ddmendpoints.agis.ALL.json
[2026-03-19 16:08:11] -rw-------. 1 boinc boinc       438 Mar 19 15:22 workernode_map.json
[2026-03-19 16:08:11] drwx------. 5 boinc boinc      4096 Mar 19 15:23 pilot3
[2026-03-19 16:08:11] -rw-------. 1 boinc boinc 217231575 Mar 19 16:06 HITS.49191318._000022.pool.root.1
[2026-03-19 16:08:11] -rw-r--r--. 1 boinc boinc       529 Mar 19 16:06 boinc_task_state.xml
[2026-03-19 16:08:11] -rw-------. 1 boinc boinc        95 Mar 19 16:06 pilot_heartbeat.json
[2026-03-19 16:08:11] -rw-------. 1 boinc boinc      1022 Mar 19 16:07 memory_monitor_summary.json
[2026-03-19 16:08:11] -rw-------. 1 boinc boinc    368845 Mar 19 16:07 log.49191318._000022.job.log.tgz.1
[2026-03-19 16:08:11] -rw-------. 1 boinc boinc      6330 Mar 19 16:07 heartbeat.json
[2026-03-19 16:08:11] -rw-r--r--. 1 boinc boinc        27 Mar 19 16:07 wrapper_checkpoint.txt
[2026-03-19 16:08:11] -rw-r--r--. 1 boinc boinc      8192 Mar 19 16:07 boinc_mmap_file
[2026-03-19 16:08:11] -rw-------. 1 boinc boinc      4901 Mar 19 16:08 pilotlog.txt
[2026-03-19 16:08:11] -rw-------. 1 boinc boinc    419948 Mar 19 16:08 log.49191318._000022.job.log.1
[2026-03-19 16:08:11] -rw-------. 1 boinc boinc       357 Mar 19 16:08 output.list
[2026-03-19 16:08:11] -rw-r--r--. 1 boinc boinc       620 Mar 19 16:08 runtime_log
[2026-03-19 16:08:11] -rw-------. 1 boinc boinc    808960 Mar 19 16:08 result.tar.gz
[2026-03-19 16:08:11] -rw-r--r--. 1 boinc boinc      9206 Mar 19 16:08 runtime_log.err
[2026-03-19 16:08:11] -rw-------. 1 boinc boinc       662 Mar 19 16:08 iLQKDmwu1M9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmB11LDmot9ZLo.diag
[2026-03-19 16:08:11] -rw-r--r--. 1 boinc boinc     21401 Mar 19 16:08 stderr.txt
[2026-03-19 16:08:11] HITS file was successfully produced:
[2026-03-19 16:08:11] -rw-------. 1 boinc boinc 217231575 Mar 19 16:06 shared/HITS.pool.root.1
[2026-03-19 16:08:11]  *** Contents of shared directory: ***
[2026-03-19 16:08:11] total 456920
[2026-03-19 16:08:11] -rw-r--r--. 2 boinc boinc 249216761 Mar 19 15:22 ATLAS.root_0
[2026-03-19 16:08:11] -rw-r--r--. 2 boinc boinc     15845 Mar 19 15:22 start_atlas.sh
[2026-03-19 16:08:11] -rw-r--r--. 2 boinc boinc    597523 Mar 19 15:22 input.tar.gz
[2026-03-19 16:08:11] -rw-------. 1 boinc boinc 217231575 Mar 19 16:06 HITS.pool.root.1
[2026-03-19 16:08:11] -rw-------. 1 boinc boinc    808960 Mar 19 16:08 result.tar.gz
16:08:12 (492978): run_atlas exited; CPU time 29298.425232
16:08:12 (492978): called boinc_finish(0)

</stderr_txt>
]]>

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