Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
20:40:56 (13594): wrapper (7.7.26015): starting
20:40:56 (13594): wrapper: running run_atlas (--nthreads 8)
[2026-03-18 20:40:56] Arguments: --nthreads 8
[2026-03-18 20:40:56] Threads: 8
[2026-03-18 20:40:56] Checking for CVMFS
[2026-03-18 20:40:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-18 20:40:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-18 20:40:56] Running cvmfs_config stat atlas.cern.ch
[2026-03-18 20:40:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-18 20:40:56] 2.11.0.0 4936 227268 103960 157428 3 188 2106458 4096000 3624 130560 3 24891115 99.634 17193281 468 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-18 20:40:56] CVMFS is ok
[2026-03-18 20:40:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-18 20:40:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-18 20:40:56] Further information can be found at the LHC@home message board.
[2026-03-18 20:40:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-18 20:40:56] Checking for apptainer binary...
[2026-03-18 20:40:56] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-18 20:40:56] apptainer is not installed, using version from CVMFS
[2026-03-18 20:40:56] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-18 20:40:57] WARNING: Environment variable TMPDIR already has value [/tmp/job_11340895/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node008
[2026-03-18 20:40:57] apptainer works
[2026-03-18 20:40:57] Set ATHENA_PROC_NUMBER=8
[2026-03-18 20:40:57] Set ATHENA_CORE_NUMBER=8
[2026-03-18 20:40:57] Starting ATLAS job with PandaID=7058631899
[2026-03-18 20:40:57] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11340895/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 22:35:22]  *** The last 200 lines of the pilot log: ***
[2026-03-18 22:35:22] 2026-03-18 21:34:21,522 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-18 22:35:22] 2026-03-18 21:34:21,522 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-18 22:35:22] 2026-03-18 21:34:21,522 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-18 22:35:22] 2026-03-18 21:34:21,523 | INFO     | fitting pss+swap vs Time
[2026-03-18 22:35:22] 2026-03-18 21:34:21,524 | INFO     | sum of square deviations: 435610028.0
[2026-03-18 22:35:22] 2026-03-18 21:34:21,524 | INFO     | sum of deviations: 2167978643.5
[2026-03-18 22:35:22] 2026-03-18 21:34:21,524 | INFO     | mean x: 1773866268.5
[2026-03-18 22:35:22] 2026-03-18 21:34:21,524 | INFO     | mean y: 2522347.776785714
[2026-03-18 22:35:22] 2026-03-18 21:34:21,524 | INFO     | intersect: -8825796422.08642
[2026-03-18 22:35:22] 2026-03-18 21:34:21,524 | INFO     | chi2: 2.1491509691288915
[2026-03-18 22:35:22] 2026-03-18 21:34:21,524 | INFO     | sum of square deviations: 379832238.0
[2026-03-18 22:35:22] 2026-03-18 21:34:21,525 | INFO     | sum of deviations: 10288497839.0
[2026-03-18 22:35:22] 2026-03-18 21:34:21,525 | INFO     | mean x: 1773866116.0
[2026-03-18 22:35:22] 2026-03-18 21:34:21,525 | INFO     | mean y: 2543702.887850467
[2026-03-18 22:35:22] 2026-03-18 21:34:21,525 | INFO     | intersect: -48046083757.589386
[2026-03-18 22:35:22] 2026-03-18 21:34:21,525 | INFO     | chi2: 1.1531081880772396
[2026-03-18 22:35:22] 2026-03-18 21:34:21,525 | INFO     | current chi2=1.1531081880772396 (change=46.34587310799179 %)
[2026-03-18 22:35:22] 2026-03-18 21:34:21,525 | INFO     | sum of square deviations: 329031285.5
[2026-03-18 22:35:22] 2026-03-18 21:34:21,525 | INFO     | sum of deviations: 9712773952.5
[2026-03-18 22:35:22] 2026-03-18 21:34:21,525 | INFO     | mean x: 1773865963.5
[2026-03-18 22:35:22] 2026-03-18 21:34:21,525 | INFO     | mean y: 2541973.5196078434
[2026-03-18 22:35:22] 2026-03-18 21:34:21,525 | INFO     | intersect: -52360743479.191895
[2026-03-18 22:35:22] 2026-03-18 21:34:21,526 | INFO     | chi2: 1.1552027125606739
[2026-03-18 22:35:22] 2026-03-18 21:34:21,526 | INFO     | current chi2=1.1552027125606739 (change=-0.18164162782737778 %)
[2026-03-18 22:35:22] 2026-03-18 21:34:21,526 | INFO     | right removable region: 101
[2026-03-18 22:35:22] 2026-03-18 21:34:21,526 | INFO     | sum of square deviations: 379832238.0
[2026-03-18 22:35:22] 2026-03-18 21:34:21,526 | INFO     | sum of deviations: -10493595882.0
[2026-03-18 22:35:22] 2026-03-18 21:34:21,526 | INFO     | mean x: 1773866421.0
[2026-03-18 22:35:22] 2026-03-18 21:34:21,526 | INFO     | mean y: 2556056.355140187
[2026-03-18 22:35:22] 2026-03-18 21:34:21,526 | INFO     | intersect: 49009026567.222305
[2026-03-18 22:35:22] 2026-03-18 21:34:21,526 | INFO     | time since job start (6796s) is within the limit (345600.0s)
[2026-03-18 22:35:22] 2026-03-18 21:34:21,526 | INFO     | chi2: 1.0452259548345966
[2026-03-18 22:35:22] 2026-03-18 21:34:21,527 | INFO     | current chi2=1.0452259548345966 (change=51.36563369216195 %)
[2026-03-18 22:35:22] 2026-03-18 21:34:21,527 | INFO     | sum of square deviations: 329031285.5
[2026-03-18 22:35:22] 2026-03-18 21:34:21,527 | INFO     | sum of deviations: -9331205898.5
[2026-03-18 22:35:22] 2026-03-18 21:34:21,527 | INFO     | mean x: 1773866573.5
[2026-03-18 22:35:22] 2026-03-18 21:34:21,527 | INFO     | mean y: 2552562.5392156863
[2026-03-18 22:35:22] 2026-03-18 21:34:21,527 | INFO     | intersect: 50308754322.78242
[2026-03-18 22:35:22] 2026-03-18 21:34:21,527 | INFO     | chi2: 1.0461941392898906
[2026-03-18 22:35:22] 2026-03-18 21:34:21,527 | INFO     | current chi2=1.0461941392898906 (change=-0.0926292014483337 %)
[2026-03-18 22:35:22] 2026-03-18 21:34:21,527 | INFO     | left removable region: 20
[2026-03-18 22:35:22] 2026-03-18 21:34:21,527 | INFO     | sum of square deviations: 164765880.0
[2026-03-18 22:35:22] 2026-03-18 21:34:21,528 | INFO     | sum of deviations: -426781376.0000001
[2026-03-18 22:35:22] 2026-03-18 21:34:21,528 | INFO     | mean x: 1773866543.0
[2026-03-18 22:35:22] 2026-03-18 21:34:21,528 | INFO     | mean y: 2573022.5555555555
[2026-03-18 22:35:22] 2026-03-18 21:34:21,528 | INFO     | intersect: 4597293750.305156
[2026-03-18 22:35:22] 2026-03-18 21:34:21,528 | INFO     | chi2: 0.005086678004536412
[2026-03-18 22:35:22] 2026-03-18 21:34:21,528 | INFO     | current memory leak: -2.59 B/s (using 81 data points, chi2=0.01)
[2026-03-18 22:35:22] 2026-03-18 21:34:21,528 | INFO     | could have reported an average CPU frequency of 2474 MHz (7 samples)
[2026-03-18 22:35:22] 2026-03-18 21:34:21,528 | INFO     | ..............................
[2026-03-18 22:35:22] 2026-03-18 21:34:21,528 | INFO     | . Timing measurements:
[2026-03-18 22:35:22] 2026-03-18 21:34:21,528 | INFO     | . get job = 0 s
[2026-03-18 22:35:22] 2026-03-18 21:34:21,528 | INFO     | . initial setup = 3 s
[2026-03-18 22:35:22] 2026-03-18 21:34:21,528 | INFO     | . payload setup = 4 s
[2026-03-18 22:35:22] 2026-03-18 21:34:21,528 | INFO     | . stage-in = 0 s
[2026-03-18 22:35:22] 2026-03-18 21:34:21,528 | INFO     | . payload execution = 6774 s
[2026-03-18 22:35:22] 2026-03-18 21:34:21,528 | INFO     | . stage-out = 0 s
[2026-03-18 22:35:22] 2026-03-18 21:34:21,529 | INFO     | . log creation = 0 s
[2026-03-18 22:35:22] 2026-03-18 21:34:21,529 | INFO     | ..............................
[2026-03-18 22:35:22] 2026-03-18 21:34:21,579 | INFO     | 
[2026-03-18 22:35:22] 2026-03-18 21:34:21,580 | INFO     | job summary report
[2026-03-18 22:35:22] 2026-03-18 21:34:21,580 | INFO     | --------------------------------------------------
[2026-03-18 22:35:22] 2026-03-18 21:34:21,580 | INFO     | PanDA job id: 7058631899
[2026-03-18 22:35:22] 2026-03-18 21:34:21,580 | INFO     | task id: 49190634
[2026-03-18 22:35:22] 2026-03-18 21:34:21,580 | INFO     | errors: (none)
[2026-03-18 22:35:22] 2026-03-18 21:34:21,580 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-18 22:35:22] 2026-03-18 21:34:21,580 | INFO     | pilot state: finished 
[2026-03-18 22:35:22] 2026-03-18 21:34:21,580 | INFO     | transexitcode: 0
[2026-03-18 22:35:22] 2026-03-18 21:34:21,580 | INFO     | exeerrorcode: 0
[2026-03-18 22:35:22] 2026-03-18 21:34:21,580 | INFO     | exeerrordiag: 
[2026-03-18 22:35:22] 2026-03-18 21:34:21,580 | INFO     | exitcode: 0
[2026-03-18 22:35:22] 2026-03-18 21:34:21,580 | INFO     | exitmsg: OK
[2026-03-18 22:35:22] 2026-03-18 21:34:21,580 | INFO     | cpuconsumptiontime: 51366 s
[2026-03-18 22:35:22] 2026-03-18 21:34:21,580 | INFO     | nevents: 400
[2026-03-18 22:35:22] 2026-03-18 21:34:21,580 | INFO     | neventsw: 0
[2026-03-18 22:35:22] 2026-03-18 21:34:21,580 | INFO     | pid: 24451
[2026-03-18 22:35:22] 2026-03-18 21:34:21,580 | INFO     | pgrp: 24451
[2026-03-18 22:35:22] 2026-03-18 21:34:21,580 | INFO     | corecount: 8
[2026-03-18 22:35:22] 2026-03-18 21:34:21,580 | INFO     | event service: False
[2026-03-18 22:35:22] 2026-03-18 21:34:21,580 | INFO     | sizes: {0: 2280274, 11: 2280274, 6781: 2307533, 6782: 2316617, 6785: 2316755}
[2026-03-18 22:35:22] 2026-03-18 21:34:21,580 | INFO     | --------------------------------------------------
[2026-03-18 22:35:22] 2026-03-18 21:34:21,580 | INFO     | 
[2026-03-18 22:35:22] 2026-03-18 21:34:21,580 | INFO     | executing command: ls -lF /tmp/job_11340895/atlas/pilot/slots/0
[2026-03-18 22:35:22] 2026-03-18 21:34:21,592 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-18 22:35:22] 2026-03-18 21:34:21,592 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-18 22:35:22] 2026-03-18 21:34:21,592 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-18 22:35:22] 2026-03-18 21:34:21,592 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-18 22:35:22] 2026-03-18 21:34:21,592 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-18 22:35:22] 2026-03-18 21:34:21,592 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-18 22:35:22] 2026-03-18 21:34:21,592 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-18 22:35:22] 2026-03-18 21:34:21,592 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-18 22:35:22] 2026-03-18 21:34:21,592 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-18 22:35:22] 2026-03-18 21:34:21,592 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-18 22:35:22] 2026-03-18 21:34:21,592 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-18 22:35:22] 2026-03-18 21:34:21,592 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-18 22:35:22] 2026-03-18 21:34:21,592 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-18 22:35:22] 2026-03-18 21:34:21,592 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-18 22:35:22] 2026-03-18 21:34:21,592 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-18 22:35:22] 2026-03-18 21:34:21,592 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-18 22:35:22] 2026-03-18 21:34:21,592 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-18 22:35:22] 2026-03-18 21:34:21,592 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-18 22:35:22] 2026-03-18 21:34:21,592 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-18 22:35:22] 2026-03-18 21:34:21,593 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-18 22:35:22] 2026-03-18 21:34:21,593 | INFO     | job 7058631899 has completed (purged errors)
[2026-03-18 22:35:22] 2026-03-18 21:34:21,593 | INFO     | overall cleanup function is called
[2026-03-18 22:35:22] 2026-03-18 21:34:22,583 | WARNING  | process 24451 can no longer be monitored (due to stat problems) - aborting
[2026-03-18 22:35:22] 2026-03-18 21:34:22,599 | INFO     | --- collectZombieJob: --- 10, [24451]
[2026-03-18 22:35:22] 2026-03-18 21:34:22,599 | INFO     | zombie collector waiting for pid 24451
[2026-03-18 22:35:22] 2026-03-18 21:34:22,599 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 22:35:22] 2026-03-18 21:34:22,599 | INFO     | collected zombie processes
[2026-03-18 22:35:22] 2026-03-18 21:34:22,599 | INFO     | will attempt to kill all subprocesses of pid=24451
[2026-03-18 22:35:22] 2026-03-18 21:34:23,015 | INFO     | using path: /tmp/job_11340895/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 22:35:22] 2026-03-18 21:34:23,158 | INFO     | process IDs to be killed: [24451] (in reverse order)
[2026-03-18 22:35:22] 2026-03-18 21:34:23,212 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 22:35:22] 2026-03-18 21:34:23,213 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 22:35:22] 2026-03-18 21:34:23,227 | INFO     | did not find any defunct processes belonging to 24451
[2026-03-18 22:35:22] 2026-03-18 21:34:23,235 | INFO     | did not find any defunct processes belonging to 24451
[2026-03-18 22:35:22] 2026-03-18 21:34:23,235 | INFO     | ready for new job
[2026-03-18 22:35:22] 2026-03-18 21:34:23,235 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 22:35:22] 2026-03-18 21:34:23,236 | INFO     | **************************************
[2026-03-18 22:35:22] 2026-03-18 21:34:23,236 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-18 22:35:22] 2026-03-18 21:34:23,236 | INFO     | **************************************
[2026-03-18 22:35:22] 2026-03-18 21:34:23,236 | INFO     | 
[2026-03-18 22:35:22] 2026-03-18 21:34:23,253 | INFO     | architecture information:
[2026-03-18 22:35:22] 2026-03-18 21:34:23,253 | INFO     | executing command: cat /etc/os-release
[2026-03-18 22:35:22] 2026-03-18 21:34:23,260 | INFO     | cat /etc/os-release:
[2026-03-18 22:35:22] NAME="CentOS Linux"
[2026-03-18 22:35:22] VERSION="7 (Core)"
[2026-03-18 22:35:22] ID="centos"
[2026-03-18 22:35:22] ID_LIKE="rhel fedora"
[2026-03-18 22:35:22] VERSION_ID="7"
[2026-03-18 22:35:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 22:35:22] ANSI_COLOR="0;31"
[2026-03-18 22:35:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 22:35:22] HOME_URL="https://www.centos.org/"
[2026-03-18 22:35:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 22:35:22] 
[2026-03-18 22:35:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 22:35:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 22:35:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 22:35:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 22:35:22] 
[2026-03-18 22:35:22] 2026-03-18 21:34:23,260 | INFO     | **************************************
[2026-03-18 22:35:22] 2026-03-18 21:34:23,311 | INFO     | number of running child processes to parent process 24451: 1
[2026-03-18 22:35:22] 2026-03-18 21:34:23,311 | INFO     | maximum number of monitored processes: 6
[2026-03-18 22:35:22] 2026-03-18 21:34:23,311 | INFO     | aborting job monitoring since job object (job id=7058631899) has expired
[2026-03-18 22:35:22] 2026-03-18 21:34:23,763 | INFO     | executing command: df -mP /tmp/job_11340895/atlas/pilot/slots/0
[2026-03-18 22:35:22] 2026-03-18 21:34:23,770 | INFO     | sufficient remaining disk space (225143947264 B)
[2026-03-18 22:35:22] 2026-03-18 21:34:23,771 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 22:35:22] 2026-03-18 21:34:23,771 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 22:35:22] 2026-03-18 21:34:23,771 | INFO     | update_server=False
[2026-03-18 22:35:22] 2026-03-18 21:34:23,771 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 22:35:22] 2026-03-18 21:34:23,771 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 22:35:22] 2026-03-18 21:34:23,771 | INFO     | will abort loop
[2026-03-18 22:35:22] 2026-03-18 21:34:23,811 | INFO     | all payload control threads have been joined
[2026-03-18 22:35:22] 2026-03-18 21:34:23,972 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 22:35:22] 2026-03-18 21:34:24,094 | INFO     | all job control threads have been joined
[2026-03-18 22:35:22] 2026-03-18 21:34:24,107 | INFO     | all data control threads have been joined
[2026-03-18 22:35:22] 2026-03-18 21:34:24,371 | INFO     | job.realtimelogging is not enabled
[2026-03-18 22:35:22] 2026-03-18 21:34:24,523 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 22:35:22] 2026-03-18 21:34:24,776 | INFO     | [job] retrieve thread has finished
[2026-03-18 22:35:22] 2026-03-18 21:34:24,776 | INFO     | [job] job monitor thread has finished
[2026-03-18 22:35:22] 2026-03-18 21:34:24,816 | INFO     | [payload] control thread has finished
[2026-03-18 22:35:22] 2026-03-18 21:34:24,921 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 22:35:22] 2026-03-18 21:34:25,099 | INFO     | [job] control thread has finished
[2026-03-18 22:35:22] 2026-03-18 21:34:25,112 | INFO     | [data] control thread has finished
[2026-03-18 22:35:22] 2026-03-18 21:34:25,376 | INFO     | [payload] validate_post thread has finished
[2026-03-18 22:35:22] 2026-03-18 21:34:25,376 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 22:35:22] 2026-03-18 21:34:25,403 | INFO     | [data] copytool_in thread has finished
[2026-03-18 22:35:22] 2026-03-18 21:34:25,411 | INFO     | [job] validate thread has finished
[2026-03-18 22:35:22] 2026-03-18 21:34:25,658 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 22:35:22] 2026-03-18 21:34:25,664 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 22:35:22] 2026-03-18 21:34:25,811 | INFO     | [payload] failed_post thread has finished
[2026-03-18 22:35:22] 2026-03-18 21:34:25,977 | INFO     | [data] copytool_out thread has finished
[2026-03-18 22:35:22] 2026-03-18 21:34:26,590 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 22:35:22] 2026-03-18 21:34:27,595 | INFO     | [job] queue monitor thread has finished
[2026-03-18 22:35:22] 2026-03-18 21:34:28,528 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 22:35:22] 2026-03-18 21:34:54,809 | INFO     | PID=18523 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-18 22:35:22] 2026-03-18 21:34:54,809 | INFO     | .. there are 4 such processes running
[2026-03-18 22:35:22] 2026-03-18 21:34:54,810 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 22:35:22] 2026-03-18 21:34:54,810 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 22:35:22] 2026-03-18 21:34:54,810 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 22:35:22] 2026-03-18 21:35:15,911 | INFO     | [monitor] cgroup control has ended
[2026-03-18 22:35:22] 2026-03-18 21:35:17,002 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456061089536)>']
[2026-03-18 22:35:22] 2026-03-18 21:35:17,923 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 22:35:22] 2026-03-18 21:35:17,923 | INFO     | [monitor] control thread has ended
[2026-03-18 22:35:22] 2026-03-18 21:35:22,027 | INFO     | all workflow threads have been joined
[2026-03-18 22:35:22] 2026-03-18 21:35:22,027 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 22:35:22] 2026-03-18 21:35:22,027 | INFO     | traces error code: 0
[2026-03-18 22:35:22] 2026-03-18 21:35:22,027 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 22:35:22] 2026-03-18 21:35:22,088 [wrapper] ==== pilot stdout END ====
[2026-03-18 22:35:22] 2026-03-18 21:35:22,090 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 22:35:22] 2026-03-18 21:35:22,091 [wrapper] pilotpid: 18523
[2026-03-18 22:35:22] 2026-03-18 21:35:22,092 [wrapper] Pilot exit status: 0
[2026-03-18 22:35:22] 2026-03-18 21:35:22,097 [wrapper] pandaids: 7058631899
[2026-03-18 22:35:22] 2026-03-18 21:35:22,136 [wrapper] cleanup supervisor_pilot 12028 18524
[2026-03-18 22:35:22] 2026-03-18 21:35:22,137 [wrapper] Test setup, not cleaning
[2026-03-18 22:35:22] 2026-03-18 21:35:22,138 [wrapper] apfmon messages muted
[2026-03-18 22:35:22] 2026-03-18 21:35:22,140 [wrapper] ==== wrapper stdout END ====
[2026-03-18 22:35:22] 2026-03-18 21:35:22,141 [wrapper] ==== wrapper stderr END ====
[2026-03-18 22:35:22]  *** Error codes and diagnostics ***
[2026-03-18 22:35:22]     "exeErrorCode": 0,
[2026-03-18 22:35:22]     "exeErrorDiag": "",
[2026-03-18 22:35:22]     "pilotErrorCode": 0,
[2026-03-18 22:35:22]     "pilotErrorDiag": "",
[2026-03-18 22:35:22]  *** Listing of results directory ***
[2026-03-18 22:35:22] total 495144
[2026-03-18 22:35:22] -rw------- 1 mf493845 unix-user    585013 Mar 18 09:55 pilot3.tar.gz
[2026-03-18 22:35:22] -rwx------ 1 mf493845 unix-user     36322 Mar 18 09:55 runpilot2-wrapper.sh
[2026-03-18 22:35:22] -rw------- 1 mf493845 unix-user      5111 Mar 18 09:56 queuedata.json
[2026-03-18 22:35:22] -rw------- 1 mf493845 unix-user       100 Mar 18 19:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 22:35:22] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 18 19:35 run_atlas
[2026-03-18 22:35:22] -rw------- 1 mf493845 unix-user       105 Mar 18 19:35 job.xml
[2026-03-18 22:35:22] -rw-r--r-- 2 mf493845 unix-user 257868820 Mar 18 20:40 EVNT.49124091._000001.pool.root.1
[2026-03-18 22:35:22] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 18 20:40 start_atlas.sh
[2026-03-18 22:35:22] drwxrwx--x 2 mf493845 unix-user       100 Mar 18 20:40 shared
[2026-03-18 22:35:22] -rw-r--r-- 2 mf493845 unix-user    597560 Mar 18 20:40 input.tar.gz
[2026-03-18 22:35:22] -rw------- 1 mf493845 unix-user      6388 Mar 18 20:40 init_data.xml
[2026-03-18 22:35:22] -rw------- 1 mf493845 unix-user         0 Mar 18 20:40 boinc_setup_complete
[2026-03-18 22:35:22] -rw------- 1 mf493845 unix-user      8192 Mar 18 20:40 boinc_mmap_file
[2026-03-18 22:35:22] -rw------- 1 mf493845 unix-user         0 Mar 18 20:40 boinc_lockfile
[2026-03-18 22:35:22] -rw------- 1 mf493845 unix-user      2630 Mar 18 20:40 pandaJob.out
[2026-03-18 22:35:22] -rw------- 1 mf493845 unix-user   1010358 Mar 18 20:41 agis_schedconf.cvmfs.json
[2026-03-18 22:35:22] -rw------- 1 mf493845 unix-user   1511579 Mar 18 20:41 agis_ddmendpoints.agis.ALL.json
[2026-03-18 22:35:22] -rw------- 1 mf493845 unix-user       416 Mar 18 20:41 workernode_map.json
[2026-03-18 22:35:22] drwx------ 5 mf493845 unix-user       440 Mar 18 20:41 pilot3
[2026-03-18 22:35:22] -rw------- 1 mf493845 unix-user 242574926 Mar 18 22:33 HITS.49190634._000026.pool.root.1
[2026-03-18 22:35:22] -rw------- 1 mf493845 unix-user      1020 Mar 18 22:34 memory_monitor_summary.json
[2026-03-18 22:35:22] -rw------- 1 mf493845 unix-user    356096 Mar 18 22:34 log.49190634._000026.job.log.tgz.1
[2026-03-18 22:35:22] -rw------- 1 mf493845 unix-user      6301 Mar 18 22:34 heartbeat.json
[2026-03-18 22:35:22] -rw------- 1 mf493845 unix-user        95 Mar 18 22:34 pilot_heartbeat.json
[2026-03-18 22:35:22] -rw------- 1 mf493845 unix-user      5191 Mar 18 22:35 pilotlog.txt
[2026-03-18 22:35:22] -rw------- 1 mf493845 unix-user    982118 Mar 18 22:35 log.49190634._000026.job.log.1
[2026-03-18 22:35:22] -rw------- 1 mf493845 unix-user       357 Mar 18 22:35 output.list
[2026-03-18 22:35:22] -rw------- 1 mf493845 unix-user       620 Mar 18 22:35 runtime_log
[2026-03-18 22:35:22] -rw------- 1 mf493845 unix-user   1351680 Mar 18 22:35 result.tar.gz
[2026-03-18 22:35:22] -rw------- 1 mf493845 unix-user       644 Mar 18 22:35 YBwKDm7r1M9n9Rq4apOajLDm4fhM0noT9bVooX4SDmAxyLDmkwbUam.diag
[2026-03-18 22:35:22] -rw------- 1 mf493845 unix-user      9219 Mar 18 22:35 runtime_log.err
[2026-03-18 22:35:22] -rw------- 1 mf493845 unix-user     21500 Mar 18 22:35 stderr.txt
[2026-03-18 22:35:22] HITS file was successfully produced:
[2026-03-18 22:35:22] -rw------- 1 mf493845 unix-user 242574926 Mar 18 22:33 shared/HITS.pool.root.1
[2026-03-18 22:35:22]  *** Contents of shared directory: ***
[2026-03-18 22:35:22] total 490640
[2026-03-18 22:35:22] -rw-r--r-- 2 mf493845 unix-user 257868820 Mar 18 20:40 ATLAS.root_0
[2026-03-18 22:35:22] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 18 20:40 start_atlas.sh
[2026-03-18 22:35:22] -rw-r--r-- 2 mf493845 unix-user    597560 Mar 18 20:40 input.tar.gz
[2026-03-18 22:35:22] -rw------- 1 mf493845 unix-user 242574926 Mar 18 22:33 HITS.pool.root.1
[2026-03-18 22:35:22] -rw------- 1 mf493845 unix-user   1351680 Mar 18 22:35 result.tar.gz
22:35:24 (13594): run_atlas exited; CPU time 51555.840132
22:35:24 (13594): called boinc_finish(0)

</stderr_txt>
]]>

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