Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
20:23:25 (26551): wrapper (7.7.26015): starting
20:23:25 (26551): wrapper: running run_atlas (--nthreads 8)
[2026-03-18 20:23:25] Arguments: --nthreads 8
[2026-03-18 20:23:25] Threads: 8
[2026-03-18 20:23:25] Checking for CVMFS
[2026-03-18 20:23:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-18 20:23:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-18 20:23:25] Running cvmfs_config stat atlas.cern.ch
[2026-03-18 20:23:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-18 20:23:25] 2.11.0.0 8101 227367 110180 157428 2 188 3490372 4096001 1781 130560 3 17597795 99.639 12962231 392 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-18 20:23:25] CVMFS is ok
[2026-03-18 20:23:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-18 20:23:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-18 20:23:25] Further information can be found at the LHC@home message board.
[2026-03-18 20:23:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-18 20:23:25] Checking for apptainer binary...
[2026-03-18 20:23:25] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-18 20:23:25] apptainer is not installed, using version from CVMFS
[2026-03-18 20:23:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-18 20:23:25] WARNING: Environment variable TMPDIR already has value [/tmp/job_11340787/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node232
[2026-03-18 20:23:25] apptainer works
[2026-03-18 20:23:25] Set ATHENA_PROC_NUMBER=8
[2026-03-18 20:23:25] Set ATHENA_CORE_NUMBER=8
[2026-03-18 20:23:25] Starting ATLAS job with PandaID=7058687879
[2026-03-18 20:23:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11340787/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 22:45:54]  *** The last 200 lines of the pilot log: ***
[2026-03-18 22:45:54] 2026-03-18 21:44:48,499 | INFO     | mean y: 2526542.9568345323
[2026-03-18 22:45:54] 2026-03-18 21:44:48,499 | INFO     | intersect: -35750611728.89045
[2026-03-18 22:45:54] 2026-03-18 21:44:48,500 | INFO     | chi2: 1.1612988119118175
[2026-03-18 22:45:54] 2026-03-18 21:44:48,500 | INFO     | sum of square deviations: 746051197.5
[2026-03-18 22:45:54] 2026-03-18 21:44:48,500 | INFO     | sum of deviations: 15992755154.0
[2026-03-18 22:45:54] 2026-03-18 21:44:48,500 | INFO     | mean x: 1773865888.5
[2026-03-18 22:45:54] 2026-03-18 21:44:48,500 | INFO     | mean y: 2525150.2835820895
[2026-03-18 22:45:54] 2026-03-18 21:44:48,500 | INFO     | intersect: -38023019109.78466
[2026-03-18 22:45:54] 2026-03-18 21:44:48,500 | INFO     | chi2: 1.1624211142375414
[2026-03-18 22:45:54] 2026-03-18 21:44:48,500 | INFO     | current chi2=1.1624211142375414 (change=-0.09664199379281528 %)
[2026-03-18 22:45:54] 2026-03-18 21:44:48,500 | INFO     | right removable region: 133
[2026-03-18 22:45:54] 2026-03-18 21:44:48,501 | INFO     | sum of square deviations: 746051197.5
[2026-03-18 22:45:54] 2026-03-18 21:44:48,501 | INFO     | sum of deviations: -234654281.5
[2026-03-18 22:45:54] 2026-03-18 21:44:48,501 | INFO     | mean x: 1773866193.5
[2026-03-18 22:45:54] 2026-03-18 21:44:48,501 | INFO     | mean y: 2555967.73880597
[2026-03-18 22:45:54] 2026-03-18 21:44:48,501 | INFO     | intersect: 560487244.4497217
[2026-03-18 22:45:54] 2026-03-18 21:44:48,501 | INFO     | chi2: 0.022306342204578663
[2026-03-18 22:45:54] 2026-03-18 21:44:48,501 | INFO     | current chi2=0.022306342204578663 (change=98.07919012955362 %)
[2026-03-18 22:45:54] 2026-03-18 21:44:48,501 | INFO     | sum of square deviations: 665612480.0
[2026-03-18 22:45:54] 2026-03-18 21:44:48,502 | INFO     | sum of deviations: -2037505408.0000005
[2026-03-18 22:45:54] 2026-03-18 21:44:48,502 | INFO     | mean x: 1773866346.0
[2026-03-18 22:45:54] 2026-03-18 21:44:48,502 | INFO     | mean y: 2559311.488372093
[2026-03-18 22:45:54] 2026-03-18 21:44:48,502 | INFO     | intersect: 5432539039.398822
[2026-03-18 22:45:54] 2026-03-18 21:44:48,502 | INFO     | chi2: 0.0047581017249775535
[2026-03-18 22:45:54] 2026-03-18 21:44:48,502 | INFO     | current chi2=0.0047581017249775535 (change=78.66928749976367 %)
[2026-03-18 22:45:54] 2026-03-18 21:44:48,502 | INFO     | sum of square deviations: 591173875.0
[2026-03-18 22:45:54] 2026-03-18 21:44:48,502 | INFO     | sum of deviations: -1918754542.5000002
[2026-03-18 22:45:54] 2026-03-18 21:44:48,502 | INFO     | mean x: 1773866498.5
[2026-03-18 22:45:54] 2026-03-18 21:44:48,502 | INFO     | mean y: 2559059.959677419
[2026-03-18 22:45:54] 2026-03-18 21:44:48,502 | INFO     | intersect: 5759942032.584178
[2026-03-18 22:45:54] 2026-03-18 21:44:48,503 | INFO     | chi2: 0.004635775789281518
[2026-03-18 22:45:54] 2026-03-18 21:44:48,503 | INFO     | current chi2=0.004635775789281518 (change=2.5708978657158257 %)
[2026-03-18 22:45:54] 2026-03-18 21:44:48,503 | INFO     | left removable region: 30
[2026-03-18 22:45:54] 2026-03-18 21:44:48,503 | INFO     | sum of square deviations: 338804492.0
[2026-03-18 22:45:54] 2026-03-18 21:44:48,503 | INFO     | sum of deviations: -974517090.0000004
[2026-03-18 22:45:54] 2026-03-18 21:44:48,503 | INFO     | mean x: 1773866773.0
[2026-03-18 22:45:54] 2026-03-18 21:44:48,503 | INFO     | mean y: 2555983.6893203883
[2026-03-18 22:45:54] 2026-03-18 21:44:48,503 | INFO     | intersect: 5104800866.7697115
[2026-03-18 22:45:54] 2026-03-18 21:44:48,503 | INFO     | chi2: 0.004085662043400442
[2026-03-18 22:45:54] 2026-03-18 21:44:48,503 | INFO     | current memory leak: -2.88 B/s (using 103 data points, chi2=0.00)
[2026-03-18 22:45:54] 2026-03-18 21:44:48,503 | INFO     | could have reported an average CPU frequency of 2394 MHz (8 samples)
[2026-03-18 22:45:54] 2026-03-18 21:44:48,503 | INFO     | ..............................
[2026-03-18 22:45:54] 2026-03-18 21:44:48,503 | INFO     | . Timing measurements:
[2026-03-18 22:45:54] 2026-03-18 21:44:48,504 | INFO     | . get job = 0 s
[2026-03-18 22:45:54] 2026-03-18 21:44:48,504 | INFO     | . initial setup = 5 s
[2026-03-18 22:45:54] 2026-03-18 21:44:48,504 | INFO     | . payload setup = 4 s
[2026-03-18 22:45:54] 2026-03-18 21:44:48,504 | INFO     | . stage-in = 0 s
[2026-03-18 22:45:54] 2026-03-18 21:44:48,504 | INFO     | . payload execution = 8452 s
[2026-03-18 22:45:54] 2026-03-18 21:44:48,504 | INFO     | . stage-out = 0 s
[2026-03-18 22:45:54] 2026-03-18 21:44:48,504 | INFO     | . log creation = 0 s
[2026-03-18 22:45:54] 2026-03-18 21:44:48,504 | INFO     | ..............................
[2026-03-18 22:45:54] 2026-03-18 21:44:48,550 | INFO     | 
[2026-03-18 22:45:54] 2026-03-18 21:44:48,550 | INFO     | job summary report
[2026-03-18 22:45:54] 2026-03-18 21:44:48,550 | INFO     | --------------------------------------------------
[2026-03-18 22:45:54] 2026-03-18 21:44:48,550 | INFO     | PanDA job id: 7058687879
[2026-03-18 22:45:54] 2026-03-18 21:44:48,550 | INFO     | task id: 49178217
[2026-03-18 22:45:54] 2026-03-18 21:44:48,550 | INFO     | errors: (none)
[2026-03-18 22:45:54] 2026-03-18 21:44:48,550 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-18 22:45:54] 2026-03-18 21:44:48,550 | INFO     | pilot state: finished 
[2026-03-18 22:45:54] 2026-03-18 21:44:48,550 | INFO     | transexitcode: 0
[2026-03-18 22:45:54] 2026-03-18 21:44:48,550 | INFO     | exeerrorcode: 0
[2026-03-18 22:45:54] 2026-03-18 21:44:48,550 | INFO     | exeerrordiag: 
[2026-03-18 22:45:54] 2026-03-18 21:44:48,550 | INFO     | exitcode: 0
[2026-03-18 22:45:54] 2026-03-18 21:44:48,551 | INFO     | exitmsg: OK
[2026-03-18 22:45:54] 2026-03-18 21:44:48,551 | INFO     | cpuconsumptiontime: 61694 s
[2026-03-18 22:45:54] 2026-03-18 21:44:48,551 | INFO     | nevents: 400
[2026-03-18 22:45:54] 2026-03-18 21:44:48,551 | INFO     | neventsw: 0
[2026-03-18 22:45:54] 2026-03-18 21:44:48,551 | INFO     | pid: 2624
[2026-03-18 22:45:54] 2026-03-18 21:44:48,551 | INFO     | pgrp: 2624
[2026-03-18 22:45:54] 2026-03-18 21:44:48,551 | INFO     | corecount: 8
[2026-03-18 22:45:54] 2026-03-18 21:44:48,551 | INFO     | event service: False
[2026-03-18 22:45:54] 2026-03-18 21:44:48,551 | INFO     | sizes: {0: 2280308, 11: 2280308, 8460: 2317400, 8462: 2317538}
[2026-03-18 22:45:54] 2026-03-18 21:44:48,551 | INFO     | --------------------------------------------------
[2026-03-18 22:45:54] 2026-03-18 21:44:48,551 | INFO     | 
[2026-03-18 22:45:54] 2026-03-18 21:44:48,551 | INFO     | executing command: ls -lF /tmp/job_11340787/atlas/pilot/slots/0
[2026-03-18 22:45:54] 2026-03-18 21:44:48,560 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-18 22:45:54] 2026-03-18 21:44:48,560 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-18 22:45:54] 2026-03-18 21:44:48,560 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-18 22:45:54] 2026-03-18 21:44:48,560 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-18 22:45:54] 2026-03-18 21:44:48,560 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-18 22:45:54] 2026-03-18 21:44:48,560 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-18 22:45:54] 2026-03-18 21:44:48,560 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-18 22:45:54] 2026-03-18 21:44:48,560 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-18 22:45:54] 2026-03-18 21:44:48,560 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-18 22:45:54] 2026-03-18 21:44:48,560 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-18 22:45:54] 2026-03-18 21:44:48,560 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-18 22:45:54] 2026-03-18 21:44:48,560 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-18 22:45:54] 2026-03-18 21:44:48,560 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-18 22:45:54] 2026-03-18 21:44:48,560 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-18 22:45:54] 2026-03-18 21:44:48,560 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-18 22:45:54] 2026-03-18 21:44:48,561 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-18 22:45:54] 2026-03-18 21:44:48,561 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-18 22:45:54] 2026-03-18 21:44:48,561 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-18 22:45:54] 2026-03-18 21:44:48,561 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-18 22:45:54] 2026-03-18 21:44:48,561 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-18 22:45:54] 2026-03-18 21:44:48,561 | INFO     | job 7058687879 has completed (purged errors)
[2026-03-18 22:45:54] 2026-03-18 21:44:48,561 | INFO     | overall cleanup function is called
[2026-03-18 22:45:54] 2026-03-18 21:44:49,439 | WARNING  | process 2624 can no longer be monitored (due to stat problems) - aborting
[2026-03-18 22:45:54] 2026-03-18 21:44:49,517 | INFO     | using path: /tmp/job_11340787/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 22:45:54] 2026-03-18 21:44:49,517 | INFO     | using path: /tmp/job_11340787/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 22:45:54] 2026-03-18 21:44:49,517 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-18 22:45:54] 2026-03-18 21:44:49,517 | WARNING  | maxPSS not found in memory monitor output
[2026-03-18 22:45:54] 2026-03-18 21:44:49,518 | INFO     | skipping file size check of payload stdout file (/tmp/job_11340787/atlas/pilot/slots/0/PanDA_Pilot-7058687879/payload.stdout) since it has not been created yet
[2026-03-18 22:45:54] 2026-03-18 21:44:49,518 | INFO     | executing command: df -mP /tmp/job_11340787/atlas/pilot/slots/0
[2026-03-18 22:45:54] 2026-03-18 21:44:49,524 | INFO     | sufficient remaining disk space (224228540416 B)
[2026-03-18 22:45:54] 2026-03-18 21:44:49,524 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-18 22:45:54] 2026-03-18 21:44:49,524 | INFO     | output file size check: skipping output file /tmp/job_11340787/atlas/pilot/slots/0/PanDA_Pilot-7058687879/HITS.49178217._000425.pool.root.1 since it does not exist
[2026-03-18 22:45:54] 2026-03-18 21:44:49,567 | INFO     | --- collectZombieJob: --- 10, [2624]
[2026-03-18 22:45:54] 2026-03-18 21:44:49,567 | INFO     | zombie collector waiting for pid 2624
[2026-03-18 22:45:54] 2026-03-18 21:44:49,567 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 22:45:54] 2026-03-18 21:44:49,567 | INFO     | collected zombie processes
[2026-03-18 22:45:54] 2026-03-18 21:44:49,567 | INFO     | will attempt to kill all subprocesses of pid=2624
[2026-03-18 22:45:54] 2026-03-18 21:44:49,734 | INFO     | number of running child processes to parent process 2624: 1
[2026-03-18 22:45:54] 2026-03-18 21:44:49,734 | INFO     | maximum number of monitored processes: 6
[2026-03-18 22:45:54] 2026-03-18 21:44:49,734 | INFO     | aborting job monitoring since job object (job id=7058687879) has expired
[2026-03-18 22:45:54] 2026-03-18 21:44:49,771 | INFO     | process IDs to be killed: [2624] (in reverse order)
[2026-03-18 22:45:54] 2026-03-18 21:44:49,805 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 22:45:54] 2026-03-18 21:44:49,805 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 22:45:54] 2026-03-18 21:44:49,808 | INFO     | did not find any defunct processes belonging to 2624
[2026-03-18 22:45:54] 2026-03-18 21:44:49,811 | INFO     | did not find any defunct processes belonging to 2624
[2026-03-18 22:45:54] 2026-03-18 21:44:49,811 | INFO     | ready for new job
[2026-03-18 22:45:54] 2026-03-18 21:44:49,811 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 22:45:54] 2026-03-18 21:44:49,812 | INFO     | **************************************
[2026-03-18 22:45:54] 2026-03-18 21:44:49,812 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-18 22:45:54] 2026-03-18 21:44:49,812 | INFO     | **************************************
[2026-03-18 22:45:54] 2026-03-18 21:44:49,812 | INFO     | 
[2026-03-18 22:45:54] 2026-03-18 21:44:49,827 | INFO     | architecture information:
[2026-03-18 22:45:54] 2026-03-18 21:44:49,827 | INFO     | executing command: cat /etc/os-release
[2026-03-18 22:45:54] 2026-03-18 21:44:49,833 | INFO     | cat /etc/os-release:
[2026-03-18 22:45:54] NAME="CentOS Linux"
[2026-03-18 22:45:54] VERSION="7 (Core)"
[2026-03-18 22:45:54] ID="centos"
[2026-03-18 22:45:54] ID_LIKE="rhel fedora"
[2026-03-18 22:45:54] VERSION_ID="7"
[2026-03-18 22:45:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 22:45:54] ANSI_COLOR="0;31"
[2026-03-18 22:45:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 22:45:54] HOME_URL="https://www.centos.org/"
[2026-03-18 22:45:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 22:45:54] 
[2026-03-18 22:45:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 22:45:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 22:45:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 22:45:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 22:45:54] 
[2026-03-18 22:45:54] 2026-03-18 21:44:49,833 | INFO     | **************************************
[2026-03-18 22:45:54] 2026-03-18 21:44:50,336 | INFO     | executing command: df -mP /tmp/job_11340787/atlas/pilot/slots/0
[2026-03-18 22:45:54] 2026-03-18 21:44:50,343 | INFO     | sufficient remaining disk space (224229588992 B)
[2026-03-18 22:45:54] 2026-03-18 21:44:50,343 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 22:45:54] 2026-03-18 21:44:50,343 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 22:45:54] 2026-03-18 21:44:50,343 | INFO     | update_server=False
[2026-03-18 22:45:54] 2026-03-18 21:44:50,343 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 22:45:54] 2026-03-18 21:44:50,343 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 22:45:54] 2026-03-18 21:44:50,343 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 22:45:54] 2026-03-18 21:44:50,343 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 22:45:54] 2026-03-18 21:44:50,343 | INFO     | will abort loop
[2026-03-18 22:45:54] 2026-03-18 21:44:50,944 | INFO     | all data control threads have been joined
[2026-03-18 22:45:54] 2026-03-18 21:44:51,345 | INFO     | [job] queue monitor thread has finished
[2026-03-18 22:45:54] 2026-03-18 21:44:51,347 | INFO     | [job] retrieve thread has finished
[2026-03-18 22:45:54] 2026-03-18 21:44:51,349 | INFO     | [job] job monitor thread has finished
[2026-03-18 22:45:54] 2026-03-18 21:44:51,380 | INFO     | all payload control threads have been joined
[2026-03-18 22:45:54] 2026-03-18 21:44:51,537 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 22:45:54] 2026-03-18 21:44:51,584 | INFO     | [payload] failed_post thread has finished
[2026-03-18 22:45:54] 2026-03-18 21:44:51,608 | INFO     | all job control threads have been joined
[2026-03-18 22:45:54] 2026-03-18 21:44:51,854 | INFO     | [job] validate thread has finished
[2026-03-18 22:45:54] 2026-03-18 21:44:51,892 | INFO     | job.realtimelogging is not enabled
[2026-03-18 22:45:54] 2026-03-18 21:44:51,945 | INFO     | [data] control thread has finished
[2026-03-18 22:45:54] 2026-03-18 21:44:52,092 | INFO     | [payload] validate_post thread has finished
[2026-03-18 22:45:54] 2026-03-18 21:44:52,136 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 22:45:54] 2026-03-18 21:44:52,234 | INFO     | [data] copytool_in thread has finished
[2026-03-18 22:45:54] 2026-03-18 21:44:52,321 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 22:45:54] 2026-03-18 21:44:52,349 | INFO     | [data] copytool_out thread has finished
[2026-03-18 22:45:54] 2026-03-18 21:44:52,385 | INFO     | [payload] control thread has finished
[2026-03-18 22:45:54] 2026-03-18 21:44:52,613 | INFO     | [job] control thread has finished
[2026-03-18 22:45:54] 2026-03-18 21:44:52,793 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 22:45:54] 2026-03-18 21:44:52,897 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 22:45:54] 2026-03-18 21:44:56,798 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 22:45:54] 2026-03-18 21:45:20,472 | INFO     | PID=30326 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-18 22:45:54] 2026-03-18 21:45:20,472 | INFO     | .. there are 3 such processes running
[2026-03-18 22:45:54] 2026-03-18 21:45:20,472 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 22:45:54] 2026-03-18 21:45:20,472 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 22:45:54] 2026-03-18 21:45:20,472 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 22:45:54] 2026-03-18 21:45:48,558 | INFO     | [monitor] cgroup control has ended
[2026-03-18 22:45:54] 2026-03-18 21:45:49,713 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456063190784)>']
[2026-03-18 22:45:54] 2026-03-18 21:45:50,623 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 22:45:54] 2026-03-18 21:45:50,623 | INFO     | [monitor] control thread has ended
[2026-03-18 22:45:54] 2026-03-18 21:45:54,739 | INFO     | all workflow threads have been joined
[2026-03-18 22:45:54] 2026-03-18 21:45:54,739 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 22:45:54] 2026-03-18 21:45:54,739 | INFO     | traces error code: 0
[2026-03-18 22:45:54] 2026-03-18 21:45:54,739 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 22:45:54] 2026-03-18 21:45:54,791 [wrapper] ==== pilot stdout END ====
[2026-03-18 22:45:54] 2026-03-18 21:45:54,793 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 22:45:54] 2026-03-18 21:45:54,794 [wrapper] pilotpid: 30326
[2026-03-18 22:45:54] 2026-03-18 21:45:54,795 [wrapper] Pilot exit status: 0
[2026-03-18 22:45:54] 2026-03-18 21:45:54,799 [wrapper] pandaids: 7058687879
[2026-03-18 22:45:54] 2026-03-18 21:45:54,822 [wrapper] cleanup supervisor_pilot  6654 30327
[2026-03-18 22:45:54] 2026-03-18 21:45:54,823 [wrapper] Test setup, not cleaning
[2026-03-18 22:45:54] 2026-03-18 21:45:54,825 [wrapper] apfmon messages muted
[2026-03-18 22:45:54] 2026-03-18 21:45:54,826 [wrapper] ==== wrapper stdout END ====
[2026-03-18 22:45:54] 2026-03-18 21:45:54,827 [wrapper] ==== wrapper stderr END ====
[2026-03-18 22:45:54]  *** Error codes and diagnostics ***
[2026-03-18 22:45:54]     "exeErrorCode": 0,
[2026-03-18 22:45:54]     "exeErrorDiag": "",
[2026-03-18 22:45:54]     "pilotErrorCode": 0,
[2026-03-18 22:45:54]     "pilotErrorDiag": "",
[2026-03-18 22:45:54]  *** Listing of results directory ***
[2026-03-18 22:45:54] total 491628
[2026-03-18 22:45:54] -rw------- 1 mf493845 unix-user    585013 Mar 18 09:55 pilot3.tar.gz
[2026-03-18 22:45:54] -rwx------ 1 mf493845 unix-user     36322 Mar 18 09:56 runpilot2-wrapper.sh
[2026-03-18 22:45:54] -rw------- 1 mf493845 unix-user      5111 Mar 18 09:58 queuedata.json
[2026-03-18 22:45:54] -rw------- 1 mf493845 unix-user       100 Mar 18 19:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 22:45:54] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 18 19:20 run_atlas
[2026-03-18 22:45:54] -rw------- 1 mf493845 unix-user       105 Mar 18 19:20 job.xml
[2026-03-18 22:45:54] -rw-r--r-- 2 mf493845 unix-user 246101883 Mar 18 20:23 EVNT.49128307._000020.pool.root.1
[2026-03-18 22:45:54] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 18 20:23 start_atlas.sh
[2026-03-18 22:45:54] drwxrwx--x 2 mf493845 unix-user       100 Mar 18 20:23 shared
[2026-03-18 22:45:54] -rw-r--r-- 2 mf493845 unix-user    597542 Mar 18 20:23 input.tar.gz
[2026-03-18 22:45:54] -rw------- 1 mf493845 unix-user      6390 Mar 18 20:23 init_data.xml
[2026-03-18 22:45:54] -rw------- 1 mf493845 unix-user         0 Mar 18 20:23 boinc_setup_complete
[2026-03-18 22:45:54] -rw------- 1 mf493845 unix-user      8192 Mar 18 20:23 boinc_mmap_file
[2026-03-18 22:45:54] -rw------- 1 mf493845 unix-user         0 Mar 18 20:23 boinc_lockfile
[2026-03-18 22:45:54] -rw------- 1 mf493845 unix-user      2598 Mar 18 20:23 pandaJob.out
[2026-03-18 22:45:54] -rw------- 1 mf493845 unix-user   1010358 Mar 18 20:23 agis_schedconf.cvmfs.json
[2026-03-18 22:45:54] -rw------- 1 mf493845 unix-user   1511579 Mar 18 20:23 agis_ddmendpoints.agis.ALL.json
[2026-03-18 22:45:54] -rw------- 1 mf493845 unix-user       415 Mar 18 20:23 workernode_map.json
[2026-03-18 22:45:54] drwx------ 5 mf493845 unix-user       440 Mar 18 20:23 pilot3
[2026-03-18 22:45:54] -rw------- 1 mf493845 unix-user 250144139 Mar 18 22:44 HITS.49178217._000425.pool.root.1
[2026-03-18 22:45:54] -rw------- 1 mf493845 unix-user        95 Mar 18 22:44 pilot_heartbeat.json
[2026-03-18 22:45:54] -rw------- 1 mf493845 unix-user      1018 Mar 18 22:44 memory_monitor_summary.json
[2026-03-18 22:45:54] -rw------- 1 mf493845 unix-user    396524 Mar 18 22:44 log.49178217._000425.job.log.tgz.1
[2026-03-18 22:45:54] -rw------- 1 mf493845 unix-user      6297 Mar 18 22:44 heartbeat.json
[2026-03-18 22:45:54] -rw------- 1 mf493845 unix-user      4905 Mar 18 22:45 pilotlog.txt
[2026-03-18 22:45:54] -rw------- 1 mf493845 unix-user   1238928 Mar 18 22:45 log.49178217._000425.job.log.1
[2026-03-18 22:45:54] -rw------- 1 mf493845 unix-user       357 Mar 18 22:45 output.list
[2026-03-18 22:45:54] -rw------- 1 mf493845 unix-user       620 Mar 18 22:45 runtime_log
[2026-03-18 22:45:54] -rw------- 1 mf493845 unix-user   1648640 Mar 18 22:45 result.tar.gz
[2026-03-18 22:45:54] -rw------- 1 mf493845 unix-user      9219 Mar 18 22:45 runtime_log.err
[2026-03-18 22:45:54] -rw------- 1 mf493845 unix-user       643 Mar 18 22:45 dWcLDmTs1M9n9Rq4apOajLDm4fhM0noT9bVooX4SDmEyyLDm8TqhEn.diag
[2026-03-18 22:45:54] -rw------- 1 mf493845 unix-user     21925 Mar 18 22:45 stderr.txt
[2026-03-18 22:45:54] HITS file was successfully produced:
[2026-03-18 22:45:54] -rw------- 1 mf493845 unix-user 250144139 Mar 18 22:44 shared/HITS.pool.root.1
[2026-03-18 22:45:54]  *** Contents of shared directory: ***
[2026-03-18 22:45:54] total 486832
[2026-03-18 22:45:54] -rw-r--r-- 2 mf493845 unix-user 246101883 Mar 18 20:23 ATLAS.root_0
[2026-03-18 22:45:54] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 18 20:23 start_atlas.sh
[2026-03-18 22:45:54] -rw-r--r-- 2 mf493845 unix-user    597542 Mar 18 20:23 input.tar.gz
[2026-03-18 22:45:54] -rw------- 1 mf493845 unix-user 250144139 Mar 18 22:44 HITS.pool.root.1
[2026-03-18 22:45:54] -rw------- 1 mf493845 unix-user   1648640 Mar 18 22:45 result.tar.gz
22:45:56 (26551): run_atlas exited; CPU time 61824.394038
22:45:56 (26551): called boinc_finish(0)

</stderr_txt>
]]>

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