Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:22:29 (640815): wrapper (7.7.26015): starting
11:22:29 (640815): wrapper: running run_atlas (--nthreads 4)
[2026-03-19 11:22:29] Arguments: --nthreads 4
[2026-03-19 11:22:29] Threads: 4
[2026-03-19 11:22:29] Checking for CVMFS
[2026-03-19 11:22:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-19 11:22:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-19 11:22:31] Running cvmfs_config stat atlas.cern.ch
[2026-03-19 11:22:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-19 11:22:31] 2.9.2.0 245341 4068 92360 157450 0 49 32410244 36864001 0 130560 0 1249162 99.979 146521 11202 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-19 11:22:31] CVMFS is ok
[2026-03-19 11:22:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-19 11:22:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-19 11:22:31] Further information can be found at the LHC@home message board.
[2026-03-19 11:22:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-19 11:22:31] Checking for apptainer binary...
[2026-03-19 11:22:31] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-19 11:22:31] Running /usr/bin/apptainer --version
[2026-03-19 11:22:31] apptainer version 1.4.1-1.1
[2026-03-19 11:22:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-19 11:22:31] thA319a
[2026-03-19 11:22:31] apptainer works
[2026-03-19 11:22:31] Set ATHENA_PROC_NUMBER=4
[2026-03-19 11:22:31] Set ATHENA_CORE_NUMBER=4
[2026-03-19 11:22:31] Starting ATLAS job with PandaID=7056976260
[2026-03-19 11:22:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-19 14:23:06]  *** The last 200 lines of the pilot log: ***
[2026-03-19 14:23:06] 2026-03-19 13:22:35,310 | INFO     | zombie collector waiting for pid 649464
[2026-03-19 14:23:06] 2026-03-19 13:22:35,310 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-19 14:23:06] 2026-03-19 13:22:35,310 | INFO     | collected zombie processes
[2026-03-19 14:23:06] 2026-03-19 13:22:35,310 | INFO     | will attempt to kill all subprocesses of pid=649464
[2026-03-19 14:23:06] 2026-03-19 13:22:35,353 | INFO     | process IDs to be killed: [649464] (in reverse order)
[2026-03-19 14:23:06] 2026-03-19 13:22:35,387 | WARNING  | found no corresponding commands to process id(s)
[2026-03-19 14:23:06] 2026-03-19 13:22:35,387 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-19 14:23:06] 2026-03-19 13:22:35,389 | INFO     | did not find any defunct processes belonging to 649464
[2026-03-19 14:23:06] 2026-03-19 13:22:35,390 | INFO     | did not find any defunct processes belonging to 649464
[2026-03-19 14:23:06] 2026-03-19 13:22:35,390 | INFO     | ready for new job
[2026-03-19 14:23:06] 2026-03-19 13:22:35,390 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-19 14:23:06] 2026-03-19 13:22:35,391 | INFO     | **************************************
[2026-03-19 14:23:06] 2026-03-19 13:22:35,391 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-19 14:23:06] 2026-03-19 13:22:35,391 | INFO     | **************************************
[2026-03-19 14:23:06] 2026-03-19 13:22:35,391 | INFO     | 
[2026-03-19 14:23:06] 2026-03-19 13:22:35,392 | INFO     | architecture information:
[2026-03-19 14:23:06] 2026-03-19 13:22:35,392 | INFO     | executing command: cat /etc/os-release
[2026-03-19 14:23:06] 2026-03-19 13:22:35,407 | INFO     | cat /etc/os-release:
[2026-03-19 14:23:06] NAME="CentOS Linux"
[2026-03-19 14:23:06] VERSION="7 (Core)"
[2026-03-19 14:23:06] ID="centos"
[2026-03-19 14:23:06] ID_LIKE="rhel fedora"
[2026-03-19 14:23:06] VERSION_ID="7"
[2026-03-19 14:23:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-19 14:23:06] ANSI_COLOR="0;31"
[2026-03-19 14:23:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-19 14:23:06] HOME_URL="https://www.centos.org/"
[2026-03-19 14:23:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-19 14:23:06] 
[2026-03-19 14:23:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-19 14:23:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-19 14:23:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-19 14:23:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-19 14:23:06] 
[2026-03-19 14:23:06] 2026-03-19 13:22:35,407 | INFO     | **************************************
[2026-03-19 14:23:06] 2026-03-19 13:22:35,910 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-19 14:23:06] 2026-03-19 13:22:35,929 | INFO     | sufficient remaining disk space (328021835776 B)
[2026-03-19 14:23:06] 2026-03-19 13:22:35,929 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-19 14:23:06] 2026-03-19 13:22:35,929 | INFO     | current server update state: UPDATING_FINAL
[2026-03-19 14:23:06] 2026-03-19 13:22:35,929 | INFO     | update_server=False
[2026-03-19 14:23:06] 2026-03-19 13:22:35,929 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-19 14:23:06] 2026-03-19 13:22:35,944 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-19 14:23:06] 2026-03-19 13:22:35,944 | INFO     | aborting loop
[2026-03-19 14:23:06] 2026-03-19 13:22:36,264 | INFO     | all payload control threads have been joined
[2026-03-19 14:23:06] 2026-03-19 13:22:36,297 | INFO     | all data control threads have been joined
[2026-03-19 14:23:06] 2026-03-19 13:22:36,713 | INFO     | all job control threads have been joined
[2026-03-19 14:23:06] 2026-03-19 13:22:36,790 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-19 14:23:06] 2026-03-19 13:22:36,935 | INFO     | [job] retrieve thread has finished
[2026-03-19 14:23:06] 2026-03-19 13:22:36,950 | INFO     | [job] job monitor thread has finished
[2026-03-19 14:23:06] 2026-03-19 13:22:37,024 | INFO     | [payload] validate_pre thread has finished
[2026-03-19 14:23:06] 2026-03-19 13:22:37,180 | INFO     | [data] copytool_in thread has finished
[2026-03-19 14:23:06] 2026-03-19 13:22:37,270 | INFO     | [payload] control thread has finished
[2026-03-19 14:23:06] 2026-03-19 13:22:37,303 | INFO     | [data] control thread has finished
[2026-03-19 14:23:06] 2026-03-19 13:22:37,719 | INFO     | [job] control thread has finished
[2026-03-19 14:23:06] 2026-03-19 13:22:37,834 | INFO     | [payload] execute_payloads thread has finished
[2026-03-19 14:23:06] 2026-03-19 13:22:37,873 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-19 14:23:06] 2026-03-19 13:22:38,011 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-19 14:23:06] 2026-03-19 13:22:38,274 | INFO     | [payload] validate_post thread has finished
[2026-03-19 14:23:06] 2026-03-19 13:22:38,299 | INFO     | [job] validate thread has finished
[2026-03-19 14:23:06] 2026-03-19 13:22:38,398 | INFO     | [job] create_data_payload thread has finished
[2026-03-19 14:23:06] 2026-03-19 13:22:38,458 | INFO     | [payload] failed_post thread has finished
[2026-03-19 14:23:06] 2026-03-19 13:22:38,796 | INFO     | [data] copytool_out thread has finished
[2026-03-19 14:23:06] 2026-03-19 13:22:38,827 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-19 14:23:06] 2026-03-19 13:22:39,832 | INFO     | [job] queue monitor thread has finished
[2026-03-19 14:23:06] 2026-03-19 13:22:39,842 [wrapper] supervise_pilot (15 min periods counter: 13)
[2026-03-19 14:23:06] 2026-03-19 13:22:41,880 | INFO     | [data] queue_monitor thread has finished
[2026-03-19 14:23:06] 2026-03-19 13:22:58,812 | INFO     | [monitor] cgroup control has ended
[2026-03-19 14:23:06] 2026-03-19 13:22:59,490 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140208547919680)>', '<ExcThread(monitor, started 140207881950976)>']
[2026-03-19 14:23:06] 2026-03-19 13:23:04,515 | INFO     | all workflow threads have been joined
[2026-03-19 14:23:06] 2026-03-19 13:23:04,516 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-19 14:23:06] 2026-03-19 13:23:04,516 | INFO     | traces error code: 0
[2026-03-19 14:23:06] 2026-03-19 13:23:04,516 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-19 14:23:06] 2026-03-19 13:23:06,734 | INFO     | PID=644948 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-19 14:23:06] 2026-03-19 13:23:06,734 | INFO     | found 0 job(s) in 20 queues
[2026-03-19 14:23:06] 2026-03-19 13:23:06,734 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-19 14:23:06] 2026-03-19 13:23:06,734 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-19 14:23:06] 2026-03-19 13:23:06,734 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-19 14:23:06] 2026-03-19 13:23:06,734 | INFO     | [monitor] control thread has ended
[2026-03-19 14:23:06] 2026-03-19 13:23:06,810 [wrapper] ==== pilot stdout END ====
[2026-03-19 14:23:06] 2026-03-19 13:23:06,814 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-19 14:23:06] 2026-03-19 13:23:06,818 [wrapper] pilotpid: 644948
[2026-03-19 14:23:06] 2026-03-19 13:23:06,822 [wrapper] Pilot exit status: 0
[2026-03-19 14:23:06] 2026-03-19 13:23:06,834 [wrapper] pandaids: 7056976260
[2026-03-19 14:23:06] 2026-03-19 13:23:06,855 [wrapper] cleanup supervisor_pilot  656138 644949
[2026-03-19 14:23:06] 2026-03-19 13:23:06,859 [wrapper] Test setup, not cleaning
[2026-03-19 14:23:06] 2026-03-19 13:23:06,863 [wrapper] apfmon messages muted
[2026-03-19 14:23:06] 2026-03-19 13:23:06,866 [wrapper] ==== wrapper stdout END ====
[2026-03-19 14:23:06] 2026-03-19 13:23:06,869 [wrapper] ==== wrapper stderr END ====
[2026-03-19 14:23:06]  *** Error codes and diagnostics ***
[2026-03-19 14:23:06]     "exeErrorCode": 0,
[2026-03-19 14:23:06]     "exeErrorDiag": "",
[2026-03-19 14:23:06]     "pilotErrorCode": 0,
[2026-03-19 14:23:06]     "pilotErrorDiag": "",
[2026-03-19 14:23:06]  *** Listing of results directory ***
[2026-03-19 14:23:06] total 479956
[2026-03-19 14:23:06] -rw-r--r-- 1 boinc boinc    585013 Mar 16 18:24 pilot3.tar.gz
[2026-03-19 14:23:06] -rwx------ 1 boinc boinc     36322 Mar 16 18:27 runpilot2-wrapper.sh
[2026-03-19 14:23:06] -rw-r--r-- 1 boinc boinc      5111 Mar 16 18:30 queuedata.json
[2026-03-19 14:23:06] -rw-r--r-- 1 boinc boinc       100 Mar 19 11:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-19 14:23:06] -rwxr-xr-x 1 boinc boinc      7986 Mar 19 11:22 run_atlas
[2026-03-19 14:23:06] -rw-r--r-- 1 boinc boinc       105 Mar 19 11:22 job.xml
[2026-03-19 14:23:06] -rw-r--r-- 2 boinc boinc 240793413 Mar 19 11:22 EVNT.49135495._000002.pool.root.1
[2026-03-19 14:23:06] -rw-r--r-- 2 boinc boinc    597545 Mar 19 11:22 input.tar.gz
[2026-03-19 14:23:06] -rw-r--r-- 2 boinc boinc     15845 Mar 19 11:22 start_atlas.sh
[2026-03-19 14:23:06] drwxrwx--x 2 boinc boinc      4096 Mar 19 11:22 shared
[2026-03-19 14:23:06] -rw-r--r-- 1 boinc boinc         0 Mar 19 11:22 boinc_setup_complete
[2026-03-19 14:23:06] -rw-r--r-- 1 boinc boinc      6366 Mar 19 11:22 init_data.xml
[2026-03-19 14:23:06] -rw-r--r-- 1 boinc boinc         0 Mar 19 11:22 boinc_lockfile
[2026-03-19 14:23:06] -rw-r--r-- 1 boinc boinc      2614 Mar 19 11:22 pandaJob.out
[2026-03-19 14:23:06] -rw------- 1 boinc boinc   1010732 Mar 19 11:22 agis_schedconf.cvmfs.json
[2026-03-19 14:23:06] -rw------- 1 boinc boinc   1511579 Mar 19 11:22 agis_ddmendpoints.agis.ALL.json
[2026-03-19 14:23:06] -rw------- 1 boinc boinc       422 Mar 19 11:22 workernode_map.json
[2026-03-19 14:23:06] drwx------ 5 boinc boinc      4096 Mar 19 11:22 pilot3
[2026-03-19 14:23:06] -rw------- 1 boinc boinc 243029856 Mar 19 14:22 HITS.49181660._000028.pool.root.1
[2026-03-19 14:23:06] -rw-r--r-- 1 boinc boinc       530 Mar 19 14:22 boinc_task_state.xml
[2026-03-19 14:23:06] -rw------- 1 boinc boinc      1017 Mar 19 14:22 memory_monitor_summary.json
[2026-03-19 14:23:06] -rw------- 1 boinc boinc    337959 Mar 19 14:22 log.49181660._000028.job.log.tgz.1
[2026-03-19 14:23:06] -rw------- 1 boinc boinc      6305 Mar 19 14:22 heartbeat.json
[2026-03-19 14:23:06] -rw-r--r-- 1 boinc boinc        28 Mar 19 14:22 wrapper_checkpoint.txt
[2026-03-19 14:23:06] -rw-r--r-- 1 boinc boinc      8192 Mar 19 14:22 boinc_mmap_file
[2026-03-19 14:23:06] -rw------- 1 boinc boinc       746 Mar 19 14:23 pilotlog.txt
[2026-03-19 14:23:06] -rw------- 1 boinc boinc        95 Mar 19 14:23 pilot_heartbeat.json
[2026-03-19 14:23:06] -rw------- 1 boinc boinc   1523702 Mar 19 14:23 log.49181660._000028.job.log.1
[2026-03-19 14:23:06] -rw------- 1 boinc boinc       357 Mar 19 14:23 output.list
[2026-03-19 14:23:06] -rw-r--r-- 1 boinc boinc       620 Mar 19 14:23 runtime_log
[2026-03-19 14:23:06] -rw------- 1 boinc boinc   1884160 Mar 19 14:23 result.tar.gz
[2026-03-19 14:23:06] -rw-r--r-- 1 boinc boinc      8902 Mar 19 14:23 runtime_log.err
[2026-03-19 14:23:06] -rw------- 1 boinc boinc       661 Mar 19 14:23 NCKMDmTuQM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmBryLDmxJWOAo.diag
[2026-03-19 14:23:06] -rw-r--r-- 1 boinc boinc     10604 Mar 19 14:23 stderr.txt
[2026-03-19 14:23:06] HITS file was successfully produced:
[2026-03-19 14:23:06] -rw------- 1 boinc boinc 243029856 Mar 19 14:22 shared/HITS.pool.root.1
[2026-03-19 14:23:06]  *** Contents of shared directory: ***
[2026-03-19 14:23:06] total 474936
[2026-03-19 14:23:06] -rw-r--r-- 2 boinc boinc 240793413 Mar 19 11:22 ATLAS.root_0
[2026-03-19 14:23:06] -rw-r--r-- 2 boinc boinc    597545 Mar 19 11:22 input.tar.gz
[2026-03-19 14:23:06] -rw-r--r-- 2 boinc boinc     15845 Mar 19 11:22 start_atlas.sh
[2026-03-19 14:23:06] -rw------- 1 boinc boinc 243029856 Mar 19 14:22 HITS.pool.root.1
[2026-03-19 14:23:06] -rw------- 1 boinc boinc   1884160 Mar 19 14:23 result.tar.gz
14:23:08 (640815): run_atlas exited; CPU time 41612.407727
14:23:08 (640815): called boinc_finish(0)

</stderr_txt>
]]>

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