Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:44:39 (3966054): wrapper (7.7.26015): starting
06:44:39 (3966054): wrapper: running run_atlas (--nthreads 12)
[2026-03-20 06:44:39] Arguments: --nthreads 12
[2026-03-20 06:44:39] Threads: 12
[2026-03-20 06:44:39] Checking for CVMFS
[2026-03-20 06:44:39] No cvmfs_config command found, will try listing directly
[2026-03-20 06:44:39] CVMFS is ok
[2026-03-20 06:44:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-20 06:44:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-20 06:44:39] Further information can be found at the LHC@home message board.
[2026-03-20 06:44:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-20 06:44:39] Checking for apptainer binary...
[2026-03-20 06:44:39] which: no apptainer in ((null))
[2026-03-20 06:44:39] apptainer is not installed, using version from CVMFS
[2026-03-20 06:44:39] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-20 06:44:39] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot204/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz
[2026-03-20 06:44:39] apptainer works
[2026-03-20 06:44:39] Set ATHENA_PROC_NUMBER=12
[2026-03-20 06:44:39] Set ATHENA_CORE_NUMBER=12
[2026-03-20 06:44:39] Starting ATLAS job with PandaID=7056909120
[2026-03-20 06:44:39] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot204/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-20 07:18:58]  *** The last 200 lines of the pilot log: ***
[2026-03-20 07:18:58]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-20 07:18:58]  is_altstaged=None
[2026-03-20 07:18:58]  is_tar=False
[2026-03-20 07:18:58]  lfn=log.48967094._011116.job.log.tgz.1
[2026-03-20 07:18:58]  mtime=0
[2026-03-20 07:18:58]  protocol_id=None
[2026-03-20 07:18:58]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-20 07:18:58]  replicas=None
[2026-03-20 07:18:58]  scope=mc23_13p6TeV
[2026-03-20 07:18:58]  status=None
[2026-03-20 07:18:58]  status_code=0
[2026-03-20 07:18:58]  storage_token=
[2026-03-20 07:18:58]  surl=/var/lib/boinc/var/slot204/slots/1/PanDA_Pilot-7056909120/log.48967094._011116.job.log.tgz.1
[2026-03-20 07:18:58]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a4/15/log.48967094._011116.job.log.tgz.1
[2026-03-20 07:18:58]  workdir=None
[2026-03-20 07:18:58] ]
[2026-03-20 07:18:58] 2026-03-20 06:18:08,271 | INFO     | transferring file log.48967094._011116.job.log.tgz.1 from /var/lib/boinc/var/slot204/slots/1/PanDA_Pilot-7056909120/log.48967094._011116.job.log.tgz.1 to /var/lib/
[2026-03-20 07:18:58] 2026-03-20 06:18:08,271 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot204/slots/1/PanDA_Pilot-7056909120/log.48967094._011116.job.log.tgz.1 /var/lib/boinc/var/slot204/slots/1/
[2026-03-20 07:18:58] 2026-03-20 06:18:08,287 | INFO     | adding to output.list: log.48967094._011116.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a4/15/log.48967094._011116.job.log.tg
[2026-03-20 07:18:58] 2026-03-20 06:18:08,288 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-20 07:18:58] 2026-03-20 06:18:08,288 | INFO     | summary of transferred files:
[2026-03-20 07:18:58] 2026-03-20 06:18:08,288 | INFO     |  -- lfn=log.48967094._011116.job.log.tgz.1, status_code=0, status=transferred
[2026-03-20 07:18:58] 2026-03-20 06:18:08,288 | INFO     | stage-out finished correctly
[2026-03-20 07:18:58] 2026-03-20 06:18:09,517 | INFO     | time since job start (2000s) is within the limit (345600.0s)
[2026-03-20 07:18:58] 2026-03-20 06:18:11,073 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-20 07:18:58] 2026-03-20 06:18:11,118 | INFO     | job 7056909120 has state=finished
[2026-03-20 07:18:58] 2026-03-20 06:18:11,118 | INFO     | preparing for final server update for job 7056909120 in state='finished'
[2026-03-20 07:18:58] 2026-03-20 06:18:11,118 | INFO     | reading metadata from: /var/lib/boinc/var/slot204/slots/1/PanDA_Pilot-7056909120/jobReport.json
[2026-03-20 07:18:58] 2026-03-20 06:18:11,120 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot204/slots/1/workernode_map.json
[2026-03-20 07:18:58] 2026-03-20 06:18:11,120 | INFO     | this job has now completed (state=finished)
[2026-03-20 07:18:58] 2026-03-20 06:18:11,120 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-20 07:18:58] 2026-03-20 06:18:11,120 | INFO     | log transfer has been attempted: DONE
[2026-03-20 07:18:58] 2026-03-20 06:18:11,120 | INFO     | job 7056909120 has finished - writing final server update
[2026-03-20 07:18:58] 2026-03-20 06:18:11,120 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3874043/.job.ad'
[2026-03-20 07:18:58] 2026-03-20 06:18:11,120 | INFO     | total number of processed events: 400 (read)
[2026-03-20 07:18:58] 2026-03-20 06:18:11,137 | INFO     | using path: /var/lib/boinc/var/slot204/slots/1/PanDA_Pilot-7056909120/memory_monitor_summary.json (trf name=prmon)
[2026-03-20 07:18:58] 2026-03-20 06:18:11,137 | INFO     | extracted standard info from prmon json
[2026-03-20 07:18:58] 2026-03-20 06:18:11,137 | INFO     | extracted standard memory fields from prmon json
[2026-03-20 07:18:58] 2026-03-20 06:18:11,137 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-20 07:18:58] 2026-03-20 06:18:11,138 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-20 07:18:58] 2026-03-20 06:18:11,138 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-20 07:18:58] 2026-03-20 06:18:11,138 | INFO     | fitting pss+swap vs Time
[2026-03-20 07:18:58] 2026-03-20 06:18:11,138 | INFO     | sum of square deviations: 5441962.5
[2026-03-20 07:18:58] 2026-03-20 06:18:11,138 | INFO     | sum of deviations: 151943161.50000003
[2026-03-20 07:18:58] 2026-03-20 06:18:11,138 | INFO     | mean x: 1773986576.5
[2026-03-20 07:18:58] 2026-03-20 06:18:11,138 | INFO     | mean y: 2720142.423076923
[2026-03-20 07:18:58] 2026-03-20 06:18:11,138 | INFO     | intersect: -49528148343.343155
[2026-03-20 07:18:58] 2026-03-20 06:18:11,139 | INFO     | chi2: 0.00044117056640788447
[2026-03-20 07:18:58] 2026-03-20 06:18:11,139 | INFO     | current memory leak: 27.92 B/s (using 26 data points, chi2=0.00)
[2026-03-20 07:18:58] 2026-03-20 06:18:11,139 | INFO     | could have reported an average CPU frequency of 3618 MHz (5 samples)
[2026-03-20 07:18:58] 2026-03-20 06:18:11,139 | INFO     | ..............................
[2026-03-20 07:18:58] 2026-03-20 06:18:11,139 | INFO     | . Timing measurements:
[2026-03-20 07:18:58] 2026-03-20 06:18:11,139 | INFO     | . get job = 0 s
[2026-03-20 07:18:58] 2026-03-20 06:18:11,139 | INFO     | . initial setup = 4 s
[2026-03-20 07:18:58] 2026-03-20 06:18:11,139 | INFO     | . payload setup = 5 s
[2026-03-20 07:18:58] 2026-03-20 06:18:11,139 | INFO     | . stage-in = 0 s
[2026-03-20 07:18:58] 2026-03-20 06:18:11,139 | INFO     | . payload execution = 1977 s
[2026-03-20 07:18:58] 2026-03-20 06:18:11,139 | INFO     | . stage-out = 0 s
[2026-03-20 07:18:58] 2026-03-20 06:18:11,139 | INFO     | . log creation = 0 s
[2026-03-20 07:18:58] 2026-03-20 06:18:11,139 | INFO     | ..............................
[2026-03-20 07:18:58] 2026-03-20 06:18:11,184 | INFO     | 
[2026-03-20 07:18:58] 2026-03-20 06:18:11,184 | INFO     | job summary report
[2026-03-20 07:18:58] 2026-03-20 06:18:11,184 | INFO     | --------------------------------------------------
[2026-03-20 07:18:58] 2026-03-20 06:18:11,184 | INFO     | PanDA job id: 7056909120
[2026-03-20 07:18:58] 2026-03-20 06:18:11,184 | INFO     | task id: 48967094
[2026-03-20 07:18:58] 2026-03-20 06:18:11,184 | INFO     | errors: (none)
[2026-03-20 07:18:58] 2026-03-20 06:18:11,184 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-20 07:18:58] 2026-03-20 06:18:11,184 | INFO     | pilot state: finished 
[2026-03-20 07:18:58] 2026-03-20 06:18:11,184 | INFO     | transexitcode: 0
[2026-03-20 07:18:58] 2026-03-20 06:18:11,184 | INFO     | exeerrorcode: 0
[2026-03-20 07:18:58] 2026-03-20 06:18:11,184 | INFO     | exeerrordiag: 
[2026-03-20 07:18:58] 2026-03-20 06:18:11,184 | INFO     | exitcode: 0
[2026-03-20 07:18:58] 2026-03-20 06:18:11,184 | INFO     | exitmsg: OK
[2026-03-20 07:18:58] 2026-03-20 06:18:11,184 | INFO     | cpuconsumptiontime: 21229 s
[2026-03-20 07:18:58] 2026-03-20 06:18:11,184 | INFO     | nevents: 400
[2026-03-20 07:18:58] 2026-03-20 06:18:11,184 | INFO     | neventsw: 0
[2026-03-20 07:18:58] 2026-03-20 06:18:11,184 | INFO     | pid: 3976692
[2026-03-20 07:18:58] 2026-03-20 06:18:11,184 | INFO     | pgrp: 3976692
[2026-03-20 07:18:58] 2026-03-20 06:18:11,184 | INFO     | corecount: 12
[2026-03-20 07:18:58] 2026-03-20 06:18:11,185 | INFO     | event service: False
[2026-03-20 07:18:58] 2026-03-20 06:18:11,185 | INFO     | sizes: {0: 2279753, 1: 2280270, 11: 2280270, 1986: 2305247, 1988: 2314269, 1991: 2314679}
[2026-03-20 07:18:58] 2026-03-20 06:18:11,185 | INFO     | --------------------------------------------------
[2026-03-20 07:18:58] 2026-03-20 06:18:11,185 | INFO     | 
[2026-03-20 07:18:58] 2026-03-20 06:18:11,185 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot204/slots/1
[2026-03-20 07:18:58] 2026-03-20 06:18:11,199 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-20 07:18:58] 2026-03-20 06:18:11,200 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-20 07:18:58] 2026-03-20 06:18:11,200 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-20 07:18:58] 2026-03-20 06:18:11,200 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-20 07:18:58] 2026-03-20 06:18:11,200 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-20 07:18:58] 2026-03-20 06:18:11,200 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-20 07:18:58] 2026-03-20 06:18:11,200 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-20 07:18:58] 2026-03-20 06:18:11,200 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-20 07:18:58] 2026-03-20 06:18:11,200 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-20 07:18:58] 2026-03-20 06:18:11,200 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-20 07:18:58] 2026-03-20 06:18:11,200 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-20 07:18:58] 2026-03-20 06:18:11,200 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-20 07:18:58] 2026-03-20 06:18:11,200 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-20 07:18:58] 2026-03-20 06:18:11,200 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-20 07:18:58] 2026-03-20 06:18:11,200 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-20 07:18:58] 2026-03-20 06:18:11,200 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-20 07:18:58] 2026-03-20 06:18:11,200 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-20 07:18:58] 2026-03-20 06:18:11,200 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-20 07:18:58] 2026-03-20 06:18:11,200 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-20 07:18:58] 2026-03-20 06:18:11,200 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-20 07:18:58] 2026-03-20 06:18:11,200 | INFO     | job 7056909120 has completed (purged errors)
[2026-03-20 07:18:58] 2026-03-20 06:18:11,200 | INFO     | overall cleanup function is called
[2026-03-20 07:18:58] 2026-03-20 06:18:11,814 | WARNING  | process 3976692 can no longer be monitored (due to stat problems) - aborting
[2026-03-20 07:18:58] 2026-03-20 06:18:12,066 | INFO     | using path: /var/lib/boinc/var/slot204/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-03-20 07:18:58] 2026-03-20 06:18:12,207 | INFO     | --- collectZombieJob: --- 10, [3976692]
[2026-03-20 07:18:58] 2026-03-20 06:18:12,207 | INFO     | zombie collector waiting for pid 3976692
[2026-03-20 07:18:58] 2026-03-20 06:18:12,207 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-20 07:18:58] 2026-03-20 06:18:12,208 | INFO     | collected zombie processes
[2026-03-20 07:18:58] 2026-03-20 06:18:12,208 | INFO     | will attempt to kill all subprocesses of pid=3976692
[2026-03-20 07:18:58] 2026-03-20 06:18:12,838 | INFO     | number of running child processes to parent process 3976692: 1
[2026-03-20 07:18:58] 2026-03-20 06:18:12,838 | INFO     | maximum number of monitored processes: 6
[2026-03-20 07:18:58] 2026-03-20 06:18:12,838 | INFO     | aborting job monitoring since job object (job id=7056909120) has expired
[2026-03-20 07:18:58] 2026-03-20 06:18:12,993 | INFO     | process IDs to be killed: [3976692] (in reverse order)
[2026-03-20 07:18:58] 2026-03-20 06:18:13,136 | WARNING  | found no corresponding commands to process id(s)
[2026-03-20 07:18:58] 2026-03-20 06:18:13,136 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-20 07:18:58] 2026-03-20 06:18:13,159 | INFO     | did not find any defunct processes belonging to 3976692
[2026-03-20 07:18:58] 2026-03-20 06:18:13,181 | INFO     | did not find any defunct processes belonging to 3976692
[2026-03-20 07:18:58] 2026-03-20 06:18:13,182 | INFO     | ready for new job
[2026-03-20 07:18:58] 2026-03-20 06:18:13,182 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-20 07:18:58] 2026-03-20 06:18:13,183 | INFO     | **************************************
[2026-03-20 07:18:58] 2026-03-20 06:18:13,183 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-20 07:18:58] 2026-03-20 06:18:13,183 | INFO     | **************************************
[2026-03-20 07:18:58] 2026-03-20 06:18:13,183 | INFO     | 
[2026-03-20 07:18:58] 2026-03-20 06:18:13,187 | INFO     | architecture information:
[2026-03-20 07:18:58] 2026-03-20 06:18:13,187 | INFO     | executing command: cat /etc/os-release
[2026-03-20 07:18:58] 2026-03-20 06:18:13,198 | INFO     | cat /etc/os-release:
[2026-03-20 07:18:58] NAME="CentOS Linux"
[2026-03-20 07:18:58] VERSION="7 (Core)"
[2026-03-20 07:18:58] ID="centos"
[2026-03-20 07:18:58] ID_LIKE="rhel fedora"
[2026-03-20 07:18:58] VERSION_ID="7"
[2026-03-20 07:18:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-20 07:18:58] ANSI_COLOR="0;31"
[2026-03-20 07:18:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-20 07:18:58] HOME_URL="https://www.centos.org/"
[2026-03-20 07:18:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-20 07:18:58] 
[2026-03-20 07:18:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-20 07:18:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-20 07:18:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-20 07:18:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-20 07:18:58] 
[2026-03-20 07:18:58] 2026-03-20 06:18:13,198 | INFO     | **************************************
[2026-03-20 07:18:58] 2026-03-20 06:18:13,700 | INFO     | executing command: df -mP /var/lib/boinc/var/slot204/slots/1
[2026-03-20 07:18:58] 2026-03-20 06:18:13,712 | INFO     | sufficient remaining disk space (239585984512 B)
[2026-03-20 07:18:58] 2026-03-20 06:18:13,712 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-20 07:18:58] 2026-03-20 06:18:13,713 | INFO     | current server update state: UPDATING_FINAL
[2026-03-20 07:18:58] 2026-03-20 06:18:13,713 | INFO     | update_server=False
[2026-03-20 07:18:58] 2026-03-20 06:18:13,713 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-20 07:18:58] 2026-03-20 06:18:13,713 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-20 07:18:58] 2026-03-20 06:18:13,713 | INFO     | will abort loop
[2026-03-20 07:18:58] 2026-03-20 06:18:13,779 | INFO     | all payload control threads have been joined
[2026-03-20 07:18:58] 2026-03-20 06:18:13,847 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-20 07:18:58] 2026-03-20 06:18:14,006 | INFO     | all data control threads have been joined
[2026-03-20 07:18:58] 2026-03-20 06:18:14,718 | INFO     | [job] retrieve thread has finished
[2026-03-20 07:18:58] 2026-03-20 06:18:14,718 | INFO     | [job] job monitor thread has finished
[2026-03-20 07:18:58] 2026-03-20 06:18:14,784 | INFO     | [payload] control thread has finished
[2026-03-20 07:18:58] 2026-03-20 06:18:14,974 | INFO     | [payload] execute_payloads thread has finished
[2026-03-20 07:18:58] 2026-03-20 06:18:15,012 | INFO     | [data] control thread has finished
[2026-03-20 07:18:58] 2026-03-20 06:18:15,179 | INFO     | all job control threads have been joined
[2026-03-20 07:18:58] 2026-03-20 06:18:15,311 | INFO     | [job] validate thread has finished
[2026-03-20 07:18:58] 2026-03-20 06:18:15,376 | INFO     | [job] create_data_payload thread has finished
[2026-03-20 07:18:58] 2026-03-20 06:18:15,498 | INFO     | [payload] validate_pre thread has finished
[2026-03-20 07:18:58] 2026-03-20 06:18:15,526 | INFO     | [payload] validate_post thread has finished
[2026-03-20 07:18:58] 2026-03-20 06:18:15,610 | INFO     | [data] copytool_in thread has finished
[2026-03-20 07:18:58] 2026-03-20 06:18:15,623 | INFO     | [payload] failed_post thread has finished
[2026-03-20 07:18:58] 2026-03-20 06:18:15,712 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-20 07:18:58] 2026-03-20 06:18:15,853 | INFO     | [data] copytool_out thread has finished
[2026-03-20 07:18:58] 2026-03-20 06:18:16,185 | INFO     | [job] control thread has finished
[2026-03-20 07:18:58] 2026-03-20 06:18:16,194 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-20 07:18:58] 2026-03-20 06:18:17,123 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-20 07:18:58] 2026-03-20 06:18:17,200 | INFO     | [job] queue monitor thread has finished
[2026-03-20 07:18:58] 2026-03-20 06:18:21,129 | INFO     | [data] queue_monitor thread has finished
[2026-03-20 07:18:58] 2026-03-20 06:18:43,029 | INFO     | PID=3970641 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-20 07:18:58] 2026-03-20 06:18:43,029 | INFO     | .. there are 8 such processes running
[2026-03-20 07:18:58] 2026-03-20 06:18:43,030 | INFO     | found 0 job(s) in 20 queues
[2026-03-20 07:18:58] 2026-03-20 06:18:43,030 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-20 07:18:58] 2026-03-20 06:18:43,030 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-20 07:18:58] 2026-03-20 06:18:52,016 | INFO     | [monitor] cgroup control has ended
[2026-03-20 07:18:58] 2026-03-20 06:18:53,667 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23437269722944)>', '<ExcThread(monitor, started 23436963342080)>']
[2026-03-20 07:18:58] 2026-03-20 06:18:54,083 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-20 07:18:58] 2026-03-20 06:18:54,083 | INFO     | [monitor] control thread has ended
[2026-03-20 07:18:58] 2026-03-20 06:18:58,692 | INFO     | all workflow threads have been joined
[2026-03-20 07:18:58] 2026-03-20 06:18:58,693 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-20 07:18:58] 2026-03-20 06:18:58,693 | INFO     | traces error code: 0
[2026-03-20 07:18:58] 2026-03-20 06:18:58,693 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-20 07:18:58] 2026-03-20 06:18:58,777 [wrapper] ==== pilot stdout END ====
[2026-03-20 07:18:58] 2026-03-20 06:18:58,780 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-20 07:18:58] 2026-03-20 06:18:58,781 [wrapper] pilotpid: 3970641
[2026-03-20 07:18:58] 2026-03-20 06:18:58,783 [wrapper] Pilot exit status: 0
[2026-03-20 07:18:58] 2026-03-20 06:18:58,789 [wrapper] pandaids: 7056909120
[2026-03-20 07:18:58] 2026-03-20 06:18:58,890 [wrapper] cleanup supervisor_pilot 4073571 3970642
[2026-03-20 07:18:58] 2026-03-20 06:18:58,892 [wrapper] Test setup, not cleaning
[2026-03-20 07:18:58] 2026-03-20 06:18:58,894 [wrapper] apfmon messages muted
[2026-03-20 07:18:58] 2026-03-20 06:18:58,896 [wrapper] ==== wrapper stdout END ====
[2026-03-20 07:18:58] 2026-03-20 06:18:58,898 [wrapper] ==== wrapper stderr END ====
[2026-03-20 07:18:58]  *** Error codes and diagnostics ***
[2026-03-20 07:18:58]     "exeErrorCode": 0,
[2026-03-20 07:18:58]     "exeErrorDiag": "",
[2026-03-20 07:18:58]     "pilotErrorCode": 0,
[2026-03-20 07:18:58]     "pilotErrorDiag": "",
[2026-03-20 07:18:58]  *** Listing of results directory ***
[2026-03-20 07:18:58] total 423788
[2026-03-20 07:18:58] -rw-r--r--. 1 boinc boinc    585013 Mar 18 02:12 pilot3.tar.gz
[2026-03-20 07:18:58] -rwx------. 1 boinc boinc     36322 Mar 18 02:16 runpilot2-wrapper.sh
[2026-03-20 07:18:58] -rw-r--r--. 1 boinc boinc      5111 Mar 18 02:20 queuedata.json
[2026-03-20 07:18:58] -rw-r--r--. 1 boinc boinc       100 Mar 20 06:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-20 07:18:58] -rwxr-xr-x. 1 boinc boinc      7986 Mar 20 06:08 run_atlas
[2026-03-20 07:18:58] -rw-r--r--. 1 boinc boinc       105 Mar 20 06:08 job.xml
[2026-03-20 07:18:58] -rw-r--r--. 1 boinc boinc      6711 Mar 20 06:44 init_data.xml
[2026-03-20 07:18:58] -rw-r--r--. 2 boinc boinc 217838813 Mar 20 06:44 EVNT.48967092._000438.pool.root.1
[2026-03-20 07:18:58] -rw-r--r--. 2 boinc boinc     15845 Mar 20 06:44 start_atlas.sh
[2026-03-20 07:18:58] drwxrwx--x. 2 boinc boinc      4096 Mar 20 06:44 shared
[2026-03-20 07:18:58] -rw-r--r--. 2 boinc boinc    597542 Mar 20 06:44 input.tar.gz
[2026-03-20 07:18:58] -rw-r--r--. 1 boinc boinc         0 Mar 20 06:44 boinc_lockfile
[2026-03-20 07:18:58] -rw-r--r--. 1 boinc boinc      2601 Mar 20 06:44 pandaJob.out
[2026-03-20 07:18:58] -rw-------. 1 boinc boinc   1010740 Mar 20 06:44 agis_schedconf.cvmfs.json
[2026-03-20 07:18:58] -rw-------. 1 boinc boinc   1511579 Mar 20 06:44 agis_ddmendpoints.agis.ALL.json
[2026-03-20 07:18:58] -rw-------. 1 boinc boinc       444 Mar 20 06:44 workernode_map.json
[2026-03-20 07:18:58] drwx------. 5 boinc boinc      4096 Mar 20 06:44 pilot3
[2026-03-20 07:18:58] -rw-------. 1 boinc boinc 210818952 Mar 20 07:17 HITS.48967094._011116.pool.root.1
[2026-03-20 07:18:58] -rw-r--r--. 1 boinc boinc       529 Mar 20 07:17 boinc_task_state.xml
[2026-03-20 07:18:58] -rw-------. 1 boinc boinc      1028 Mar 20 07:18 memory_monitor_summary.json
[2026-03-20 07:18:58] -rw-------. 1 boinc boinc    350460 Mar 20 07:18 log.48967094._011116.job.log.tgz.1
[2026-03-20 07:18:58] -rw-------. 1 boinc boinc      6359 Mar 20 07:18 heartbeat.json
[2026-03-20 07:18:58] -rw-------. 1 boinc boinc        95 Mar 20 07:18 pilot_heartbeat.json
[2026-03-20 07:18:58] -rw-r--r--. 1 boinc boinc      8192 Mar 20 07:18 boinc_mmap_file
[2026-03-20 07:18:58] -rw-r--r--. 1 boinc boinc        27 Mar 20 07:18 wrapper_checkpoint.txt
[2026-03-20 07:18:58] -rw-------. 1 boinc boinc      4832 Mar 20 07:18 pilotlog.txt
[2026-03-20 07:18:58] -rw-------. 1 boinc boinc    329870 Mar 20 07:18 log.48967094._011116.job.log.1
[2026-03-20 07:18:58] -rw-------. 1 boinc boinc       357 Mar 20 07:18 output.list
[2026-03-20 07:18:58] -rw-r--r--. 1 boinc boinc       620 Mar 20 07:18 runtime_log
[2026-03-20 07:18:58] -rw-------. 1 boinc boinc    696320 Mar 20 07:18 result.tar.gz
[2026-03-20 07:18:58] -rw-r--r--. 1 boinc boinc      9223 Mar 20 07:18 runtime_log.err
[2026-03-20 07:18:58] -rw-------. 1 boinc boinc       659 Mar 20 07:18 fykMDmHhuM9n9Rq4apOajLDm4fhM0noT9bVooX4SDm1TyLDm8YCdSm.diag
[2026-03-20 07:18:58] -rw-r--r--. 1 boinc boinc     21350 Mar 20 07:18 stderr.txt
[2026-03-20 07:18:58] HITS file was successfully produced:
[2026-03-20 07:18:58] -rw-------. 1 boinc boinc 210818952 Mar 20 07:17 shared/HITS.pool.root.1
[2026-03-20 07:18:58]  *** Contents of shared directory: ***
[2026-03-20 07:18:58] total 419904
[2026-03-20 07:18:58] -rw-r--r--. 2 boinc boinc 217838813 Mar 20 06:44 ATLAS.root_0
[2026-03-20 07:18:58] -rw-r--r--. 2 boinc boinc     15845 Mar 20 06:44 start_atlas.sh
[2026-03-20 07:18:58] -rw-r--r--. 2 boinc boinc    597542 Mar 20 06:44 input.tar.gz
[2026-03-20 07:18:58] -rw-------. 1 boinc boinc 210818952 Mar 20 07:17 HITS.pool.root.1
[2026-03-20 07:18:58] -rw-------. 1 boinc boinc    696320 Mar 20 07:18 result.tar.gz
07:19:00 (3966054): run_atlas exited; CPU time 21292.577220
07:19:00 (3966054): called boinc_finish(0)

</stderr_txt>
]]>

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