Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:47:52 (1128109): wrapper (7.7.26015): starting
16:47:52 (1128109): wrapper: running run_atlas (--nthreads 2)
[2026-03-19 16:47:52] Arguments: --nthreads 2
[2026-03-19 16:47:52] Threads: 2
[2026-03-19 16:47:52] Checking for CVMFS
[2026-03-19 16:47:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-19 16:47:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-19 16:47:52] Running cvmfs_config stat atlas.cern.ch
[2026-03-19 16:47:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-19 16:47:52] 2.9.2.0 867299 5914 62464 157458 1 50 29006566 36864001 0 130560 0 924575 99.964 198095 7280 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-19 16:47:52] CVMFS is ok
[2026-03-19 16:47:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-19 16:47:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-19 16:47:52] Further information can be found at the LHC@home message board.
[2026-03-19 16:47:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-19 16:47:52] Checking for apptainer binary...
[2026-03-19 16:47:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-19 16:47:52] Running /usr/bin/apptainer --version
[2026-03-19 16:47:52] apptainer version 1.4.1-1.1
[2026-03-19 16:47:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-19 16:47:53] thA337
[2026-03-19 16:47:53] apptainer works
[2026-03-19 16:47:53] Set ATHENA_PROC_NUMBER=2
[2026-03-19 16:47:53] Set ATHENA_CORE_NUMBER=2
[2026-03-19 16:47:53] Starting ATLAS job with PandaID=7058767084
[2026-03-19 16:47:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-19 20:50:43]  *** The last 200 lines of the pilot log: ***
[2026-03-19 20:50:43] 2026-03-19 19:50:10,920 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-19 20:50:43] 2026-03-19 19:50:10,920 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-19 20:50:43] 2026-03-19 19:50:10,920 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-19 20:50:43] 2026-03-19 19:50:10,920 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-19 20:50:43] 2026-03-19 19:50:10,920 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-19 20:50:43] 2026-03-19 19:50:10,920 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-19 20:50:43] 2026-03-19 19:50:10,920 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-19 20:50:43] 2026-03-19 19:50:10,920 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-19 20:50:43] 2026-03-19 19:50:10,920 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-19 20:50:43] 2026-03-19 19:50:10,920 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-19 20:50:43] 2026-03-19 19:50:10,920 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-19 20:50:43] 2026-03-19 19:50:10,920 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-19 20:50:43] 2026-03-19 19:50:10,920 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-19 20:50:43] 2026-03-19 19:50:10,920 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-19 20:50:43] 2026-03-19 19:50:10,920 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-19 20:50:43] 2026-03-19 19:50:10,920 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-19 20:50:43] 2026-03-19 19:50:10,920 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-19 20:50:43] 2026-03-19 19:50:10,920 | INFO     | job 7058767084 has completed (purged errors)
[2026-03-19 20:50:43] 2026-03-19 19:50:10,920 | INFO     | overall cleanup function is called
[2026-03-19 20:50:43] 2026-03-19 19:50:11,927 | INFO     | --- collectZombieJob: --- 10, [1136545]
[2026-03-19 20:50:43] 2026-03-19 19:50:11,927 | INFO     | zombie collector waiting for pid 1136545
[2026-03-19 20:50:43] 2026-03-19 19:50:11,927 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-19 20:50:43] 2026-03-19 19:50:11,927 | INFO     | collected zombie processes
[2026-03-19 20:50:43] 2026-03-19 19:50:11,928 | INFO     | will attempt to kill all subprocesses of pid=1136545
[2026-03-19 20:50:43] 2026-03-19 19:50:11,959 | INFO     | process IDs to be killed: [1136545] (in reverse order)
[2026-03-19 20:50:43] 2026-03-19 19:50:11,979 | WARNING  | found no corresponding commands to process id(s)
[2026-03-19 20:50:43] 2026-03-19 19:50:11,979 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-19 20:50:43] 2026-03-19 19:50:11,980 | INFO     | did not find any defunct processes belonging to 1136545
[2026-03-19 20:50:43] 2026-03-19 19:50:11,980 | INFO     | did not find any defunct processes belonging to 1136545
[2026-03-19 20:50:43] 2026-03-19 19:50:11,980 | INFO     | ready for new job
[2026-03-19 20:50:43] 2026-03-19 19:50:11,980 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-19 20:50:43] 2026-03-19 19:50:11,981 | INFO     | **************************************
[2026-03-19 20:50:43] 2026-03-19 19:50:11,981 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-19 20:50:43] 2026-03-19 19:50:11,981 | INFO     | **************************************
[2026-03-19 20:50:43] 2026-03-19 19:50:11,981 | INFO     | 
[2026-03-19 20:50:43] 2026-03-19 19:50:11,981 | INFO     | architecture information:
[2026-03-19 20:50:43] 2026-03-19 19:50:11,981 | INFO     | executing command: cat /etc/os-release
[2026-03-19 20:50:43] 2026-03-19 19:50:11,990 | INFO     | cat /etc/os-release:
[2026-03-19 20:50:43] NAME="CentOS Linux"
[2026-03-19 20:50:43] VERSION="7 (Core)"
[2026-03-19 20:50:43] ID="centos"
[2026-03-19 20:50:43] ID_LIKE="rhel fedora"
[2026-03-19 20:50:43] VERSION_ID="7"
[2026-03-19 20:50:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-19 20:50:43] ANSI_COLOR="0;31"
[2026-03-19 20:50:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-19 20:50:43] HOME_URL="https://www.centos.org/"
[2026-03-19 20:50:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-19 20:50:43] 
[2026-03-19 20:50:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-19 20:50:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-19 20:50:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-19 20:50:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-19 20:50:43] 
[2026-03-19 20:50:43] 2026-03-19 19:50:11,990 | INFO     | **************************************
[2026-03-19 20:50:43] 2026-03-19 19:50:12,494 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-19 20:50:43] 2026-03-19 19:50:12,507 | INFO     | sufficient remaining disk space (483109371904 B)
[2026-03-19 20:50:43] 2026-03-19 19:50:12,507 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-19 20:50:43] 2026-03-19 19:50:12,507 | INFO     | current server update state: UPDATING_FINAL
[2026-03-19 20:50:43] 2026-03-19 19:50:12,507 | INFO     | update_server=False
[2026-03-19 20:50:43] 2026-03-19 19:50:12,507 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-19 20:50:43] 2026-03-19 19:50:12,507 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-19 20:50:43] 2026-03-19 19:50:12,507 | INFO     | aborting loop
[2026-03-19 20:50:43] 2026-03-19 19:50:12,507 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-19 20:50:43] 2026-03-19 19:50:12,617 | INFO     | all job control threads have been joined
[2026-03-19 20:50:43] 2026-03-19 19:50:13,209 | INFO     | all data control threads have been joined
[2026-03-19 20:50:43] 2026-03-19 19:50:13,405 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-19 20:50:43] 2026-03-19 19:50:13,512 | INFO     | [job] retrieve thread has finished
[2026-03-19 20:50:43] 2026-03-19 19:50:13,513 | INFO     | [job] job monitor thread has finished
[2026-03-19 20:50:43] 2026-03-19 19:50:13,514 | INFO     | [job] queue monitor thread has finished
[2026-03-19 20:50:43] 2026-03-19 19:50:13,623 | INFO     | [payload] validate_pre thread has finished
[2026-03-19 20:50:43] 2026-03-19 19:50:13,624 | INFO     | [job] control thread has finished
[2026-03-19 20:50:43] 2026-03-19 19:50:13,761 | INFO     | [payload] validate_post thread has finished
[2026-03-19 20:50:43] 2026-03-19 19:50:13,876 | INFO     | all payload control threads have been joined
[2026-03-19 20:50:43] 2026-03-19 19:50:14,215 | INFO     | [data] control thread has finished
[2026-03-19 20:50:43] 2026-03-19 19:50:14,216 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-19 20:50:43] 2026-03-19 19:50:14,486 | INFO     | [payload] execute_payloads thread has finished
[2026-03-19 20:50:43] 2026-03-19 19:50:14,786 | INFO     | [job] validate thread has finished
[2026-03-19 20:50:43] 2026-03-19 19:50:14,855 | INFO     | [payload] failed_post thread has finished
[2026-03-19 20:50:43] 2026-03-19 19:50:14,861 | INFO     | [job] create_data_payload thread has finished
[2026-03-19 20:50:43] 2026-03-19 19:50:14,882 | INFO     | [payload] control thread has finished
[2026-03-19 20:50:43] 2026-03-19 19:50:14,892 | INFO     | [data] copytool_in thread has finished
[2026-03-19 20:50:43] 2026-03-19 19:50:15,411 | INFO     | [data] copytool_out thread has finished
[2026-03-19 20:50:43] 2026-03-19 19:50:18,219 | INFO     | [data] queue_monitor thread has finished
[2026-03-19 20:50:43] 2026-03-19 19:50:23,268 | INFO     | job.realtimelogging is not enabled
[2026-03-19 20:50:43] 2026-03-19 19:50:24,274 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-19 20:50:43] 2026-03-19 19:50:32,969 | INFO     | [monitor] cgroup control has ended
[2026-03-19 20:50:43] 2026-03-19 19:50:33,701 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139730456926016)>', '<ExcThread(monitor, started 139729370605312)>']
[2026-03-19 20:50:43] 2026-03-19 19:50:38,722 | INFO     | all workflow threads have been joined
[2026-03-19 20:50:43] 2026-03-19 19:50:38,723 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-19 20:50:43] 2026-03-19 19:50:38,724 | INFO     | traces error code: 0
[2026-03-19 20:50:43] 2026-03-19 19:50:38,724 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-19 20:50:43] 2026-03-19 19:50:43,105 | INFO     | PID=1132137 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-19 20:50:43] 2026-03-19 19:50:43,105 | INFO     | found 0 job(s) in 20 queues
[2026-03-19 20:50:43] 2026-03-19 19:50:43,105 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-19 20:50:43] 2026-03-19 19:50:43,105 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-19 20:50:43] 2026-03-19 19:50:43,105 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-19 20:50:43] 2026-03-19 19:50:43,105 | INFO     | [monitor] control thread has ended
[2026-03-19 20:50:43] 2026-03-19 19:50:43,145 [wrapper] ==== pilot stdout END ====
[2026-03-19 20:50:43] 2026-03-19 19:50:43,148 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-19 20:50:43] 2026-03-19 19:50:43,150 [wrapper] pilotpid: 1132137
[2026-03-19 20:50:43] 2026-03-19 19:50:43,153 [wrapper] Pilot exit status: 0
[2026-03-19 20:50:43] 2026-03-19 19:50:43,159 [wrapper] pandaids: 7058767084
[2026-03-19 20:50:43] 2026-03-19 19:50:43,172 [wrapper] cleanup supervisor_pilot 1142017 1132138
[2026-03-19 20:50:43] 2026-03-19 19:50:43,174 [wrapper] Test setup, not cleaning
[2026-03-19 20:50:43] 2026-03-19 19:50:43,177 [wrapper] apfmon messages muted
[2026-03-19 20:50:43] 2026-03-19 19:50:43,179 [wrapper] ==== wrapper stdout END ====
[2026-03-19 20:50:43] 2026-03-19 19:50:43,181 [wrapper] ==== wrapper stderr END ====
[2026-03-19 20:50:43]  *** Error codes and diagnostics ***
[2026-03-19 20:50:43]     "exeErrorCode": 0,
[2026-03-19 20:50:43]     "exeErrorDiag": "",
[2026-03-19 20:50:43]     "pilotErrorCode": 0,
[2026-03-19 20:50:43]     "pilotErrorDiag": "",
[2026-03-19 20:50:43]  *** Listing of results directory ***
[2026-03-19 20:50:43] total 437040
[2026-03-19 20:50:43] -rw-r--r-- 1 boinc boinc    585013 Mar 18 14:20 pilot3.tar.gz
[2026-03-19 20:50:43] -rwx------ 1 boinc boinc     36322 Mar 18 14:20 runpilot2-wrapper.sh
[2026-03-19 20:50:43] -rw-r--r-- 1 boinc boinc      5111 Mar 18 14:22 queuedata.json
[2026-03-19 20:50:43] -rw-r--r-- 1 boinc boinc       100 Mar 19 16:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-19 20:50:43] -rwxr-xr-x 1 boinc boinc      7986 Mar 19 16:47 run_atlas
[2026-03-19 20:50:43] -rw-r--r-- 1 boinc boinc       105 Mar 19 16:47 job.xml
[2026-03-19 20:50:43] -rw-r--r-- 2 boinc boinc 233882186 Mar 19 16:47 EVNT.49135115._000003.pool.root.1
[2026-03-19 20:50:43] -rw-r--r-- 2 boinc boinc    597549 Mar 19 16:47 input.tar.gz
[2026-03-19 20:50:43] -rw-r--r-- 2 boinc boinc     15845 Mar 19 16:47 start_atlas.sh
[2026-03-19 20:50:43] drwxrwx--x 2 boinc boinc      4096 Mar 19 16:47 shared
[2026-03-19 20:50:43] -rw-r--r-- 1 boinc boinc         0 Mar 19 16:47 boinc_setup_complete
[2026-03-19 20:50:43] -rw-r--r-- 1 boinc boinc      6205 Mar 19 16:47 init_data.xml
[2026-03-19 20:50:43] -rw-r--r-- 1 boinc boinc         0 Mar 19 16:47 boinc_lockfile
[2026-03-19 20:50:43] -rw-r--r-- 1 boinc boinc      2621 Mar 19 16:47 pandaJob.out
[2026-03-19 20:50:43] -rw------- 1 boinc boinc   1010732 Mar 19 16:48 agis_schedconf.cvmfs.json
[2026-03-19 20:50:43] -rw------- 1 boinc boinc       418 Mar 19 16:48 workernode_map.json
[2026-03-19 20:50:43] drwx------ 5 boinc boinc      4096 Mar 19 16:48 pilot3
[2026-03-19 20:50:43] -rw------- 1 boinc boinc 204859660 Mar 19 20:49 HITS.49176756._000068.pool.root.1
[2026-03-19 20:50:43] -rw-r--r-- 1 boinc boinc       530 Mar 19 20:49 boinc_task_state.xml
[2026-03-19 20:50:43] -rw------- 1 boinc boinc      1013 Mar 19 20:50 memory_monitor_summary.json
[2026-03-19 20:50:43] -rw------- 1 boinc boinc   1511579 Mar 19 20:50 agis_ddmendpoints.agis.ALL.json
[2026-03-19 20:50:43] -rw------- 1 boinc boinc    380408 Mar 19 20:50 log.49176756._000068.job.log.tgz.1
[2026-03-19 20:50:43] -rw------- 1 boinc boinc      6295 Mar 19 20:50 heartbeat.json
[2026-03-19 20:50:43] -rw------- 1 boinc boinc        95 Mar 19 20:50 pilot_heartbeat.json
[2026-03-19 20:50:43] -rw-r--r-- 1 boinc boinc        28 Mar 19 20:50 wrapper_checkpoint.txt
[2026-03-19 20:50:43] -rw-r--r-- 1 boinc boinc      8192 Mar 19 20:50 boinc_mmap_file
[2026-03-19 20:50:43] -rw------- 1 boinc boinc       747 Mar 19 20:50 pilotlog.txt
[2026-03-19 20:50:43] -rw------- 1 boinc boinc   2046423 Mar 19 20:50 log.49176756._000068.job.log.1
[2026-03-19 20:50:43] -rw------- 1 boinc boinc       357 Mar 19 20:50 output.list
[2026-03-19 20:50:43] -rw-r--r-- 1 boinc boinc       620 Mar 19 20:50 runtime_log
[2026-03-19 20:50:43] -rw------- 1 boinc boinc   2447360 Mar 19 20:50 result.tar.gz
[2026-03-19 20:50:43] -rw-r--r-- 1 boinc boinc      8897 Mar 19 20:50 runtime_log.err
[2026-03-19 20:50:43] -rw------- 1 boinc boinc       661 Mar 19 20:50 58LNDmT05M9n9Rq4apOajLDm4fhM0noT9bVooX4SDmDCzLDmhNnLQo.diag
[2026-03-19 20:50:43] -rw-r--r-- 1 boinc boinc     12636 Mar 19 20:50 stderr.txt
[2026-03-19 20:50:43] HITS file was successfully produced:
[2026-03-19 20:50:43] -rw------- 1 boinc boinc 204859660 Mar 19 20:49 shared/HITS.pool.root.1
[2026-03-19 20:50:43]  *** Contents of shared directory: ***
[2026-03-19 20:50:43] total 431464
[2026-03-19 20:50:43] -rw-r--r-- 2 boinc boinc 233882186 Mar 19 16:47 ATLAS.root_0
[2026-03-19 20:50:43] -rw-r--r-- 2 boinc boinc    597549 Mar 19 16:47 input.tar.gz
[2026-03-19 20:50:43] -rw-r--r-- 2 boinc boinc     15845 Mar 19 16:47 start_atlas.sh
[2026-03-19 20:50:43] -rw------- 1 boinc boinc 204859660 Mar 19 20:49 HITS.pool.root.1
[2026-03-19 20:50:43] -rw------- 1 boinc boinc   2447360 Mar 19 20:50 result.tar.gz
20:50:45 (1128109): run_atlas exited; CPU time 28416.692954
20:50:45 (1128109): called boinc_finish(0)

</stderr_txt>
]]>

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