Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:45:07 (107558): wrapper (7.7.26015): starting
12:45:07 (107558): wrapper: running run_atlas (--nthreads 3)
[2026-03-19 12:45:07] Arguments: --nthreads 3
[2026-03-19 12:45:07] Threads: 3
[2026-03-19 12:45:07] Checking for CVMFS
[2026-03-19 12:45:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-19 12:45:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-19 12:45:08] Running cvmfs_config stat atlas.cern.ch
[2026-03-19 12:45:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-19 12:45:08] 2.9.2.0 4481 1233 66680 157452 1 50 30136591 36864000 0 130560 0 389769 99.979 48981 2690 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-19 12:45:08] CVMFS is ok
[2026-03-19 12:45:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-19 12:45:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-19 12:45:08] Further information can be found at the LHC@home message board.
[2026-03-19 12:45:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-19 12:45:08] Checking for apptainer binary...
[2026-03-19 12:45:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-19 12:45:08] Running /usr/bin/apptainer --version
[2026-03-19 12:45:08] apptainer version 1.4.1-1.1
[2026-03-19 12:45:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-19 12:45:08] cosA125
[2026-03-19 12:45:08] apptainer works
[2026-03-19 12:45:08] Set ATHENA_PROC_NUMBER=3
[2026-03-19 12:45:08] Set ATHENA_CORE_NUMBER=3
[2026-03-19 12:45:08] Starting ATLAS job with PandaID=7042039413
[2026-03-19 12:45:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-19 14:03:39]  *** The last 200 lines of the pilot log: ***
[2026-03-19 14:03:39] 2026-03-19 13:03:07,218 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-19 14:03:39] 2026-03-19 13:03:07,218 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-19 14:03:39] 2026-03-19 13:03:07,218 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-19 14:03:39] 2026-03-19 13:03:07,218 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-19 14:03:39] 2026-03-19 13:03:07,219 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-19 14:03:39] 2026-03-19 13:03:07,219 | INFO     | job 7042039413 has completed (purged errors)
[2026-03-19 14:03:39] 2026-03-19 13:03:07,219 | INFO     | overall cleanup function is called
[2026-03-19 14:03:39] 2026-03-19 13:03:08,225 | INFO     | --- collectZombieJob: --- 10, [116029]
[2026-03-19 14:03:39] 2026-03-19 13:03:08,226 | INFO     | zombie collector waiting for pid 116029
[2026-03-19 14:03:39] 2026-03-19 13:03:08,226 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-19 14:03:39] 2026-03-19 13:03:08,226 | INFO     | collected zombie processes
[2026-03-19 14:03:39] 2026-03-19 13:03:08,226 | INFO     | will attempt to kill all subprocesses of pid=116029
[2026-03-19 14:03:39] 2026-03-19 13:03:08,268 | INFO     | process IDs to be killed: [116029] (in reverse order)
[2026-03-19 14:03:39] 2026-03-19 13:03:08,291 | WARNING  | found no corresponding commands to process id(s)
[2026-03-19 14:03:39] 2026-03-19 13:03:08,292 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-19 14:03:39] 2026-03-19 13:03:08,293 | INFO     | did not find any defunct processes belonging to 116029
[2026-03-19 14:03:39] 2026-03-19 13:03:08,294 | INFO     | did not find any defunct processes belonging to 116029
[2026-03-19 14:03:39] 2026-03-19 13:03:08,294 | INFO     | ready for new job
[2026-03-19 14:03:39] 2026-03-19 13:03:08,294 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-19 14:03:39] 2026-03-19 13:03:08,295 | INFO     | **************************************
[2026-03-19 14:03:39] 2026-03-19 13:03:08,295 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-19 14:03:39] 2026-03-19 13:03:08,295 | INFO     | **************************************
[2026-03-19 14:03:39] 2026-03-19 13:03:08,295 | INFO     | 
[2026-03-19 14:03:39] 2026-03-19 13:03:08,295 | INFO     | architecture information:
[2026-03-19 14:03:39] 2026-03-19 13:03:08,295 | INFO     | executing command: cat /etc/os-release
[2026-03-19 14:03:39] 2026-03-19 13:03:08,303 | INFO     | cat /etc/os-release:
[2026-03-19 14:03:39] NAME="CentOS Linux"
[2026-03-19 14:03:39] VERSION="7 (Core)"
[2026-03-19 14:03:39] ID="centos"
[2026-03-19 14:03:39] ID_LIKE="rhel fedora"
[2026-03-19 14:03:39] VERSION_ID="7"
[2026-03-19 14:03:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-19 14:03:39] ANSI_COLOR="0;31"
[2026-03-19 14:03:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-19 14:03:39] HOME_URL="https://www.centos.org/"
[2026-03-19 14:03:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-19 14:03:39] 
[2026-03-19 14:03:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-19 14:03:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-19 14:03:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-19 14:03:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-19 14:03:39] 
[2026-03-19 14:03:39] 2026-03-19 13:03:08,304 | INFO     | **************************************
[2026-03-19 14:03:39] 2026-03-19 13:03:08,807 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-19 14:03:39] 2026-03-19 13:03:08,820 | INFO     | sufficient remaining disk space (330241671168 B)
[2026-03-19 14:03:39] 2026-03-19 13:03:08,820 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-19 14:03:39] 2026-03-19 13:03:08,820 | INFO     | current server update state: UPDATING_FINAL
[2026-03-19 14:03:39] 2026-03-19 13:03:08,820 | INFO     | update_server=False
[2026-03-19 14:03:39] 2026-03-19 13:03:08,820 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-19 14:03:39] 2026-03-19 13:03:08,820 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-19 14:03:39] 2026-03-19 13:03:08,821 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-19 14:03:39] 2026-03-19 13:03:08,821 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-19 14:03:39] 2026-03-19 13:03:08,821 | INFO     | aborting loop
[2026-03-19 14:03:39] 2026-03-19 13:03:08,867 | INFO     | all payload control threads have been joined
[2026-03-19 14:03:39] 2026-03-19 13:03:09,659 | INFO     | all job control threads have been joined
[2026-03-19 14:03:39] 2026-03-19 13:03:09,759 | INFO     | all data control threads have been joined
[2026-03-19 14:03:39] 2026-03-19 13:03:09,826 | INFO     | [job] retrieve thread has finished
[2026-03-19 14:03:39] 2026-03-19 13:03:09,826 | INFO     | [job] queue monitor thread has finished
[2026-03-19 14:03:39] 2026-03-19 13:03:09,826 | INFO     | [job] job monitor thread has finished
[2026-03-19 14:03:39] 2026-03-19 13:03:09,847 | INFO     | [payload] validate_pre thread has finished
[2026-03-19 14:03:39] 2026-03-19 13:03:09,873 | INFO     | [payload] control thread has finished
[2026-03-19 14:03:39] 2026-03-19 13:03:09,916 | INFO     | [data] copytool_in thread has finished
[2026-03-19 14:03:39] 2026-03-19 13:03:10,147 | INFO     | [payload] execute_payloads thread has finished
[2026-03-19 14:03:39] 2026-03-19 13:03:10,537 | INFO     | [payload] failed_post thread has finished
[2026-03-19 14:03:39] 2026-03-19 13:03:10,665 | INFO     | [job] control thread has finished
[2026-03-19 14:03:39] 2026-03-19 13:03:10,765 | INFO     | [data] control thread has finished
[2026-03-19 14:03:39] 2026-03-19 13:03:10,827 | INFO     | [data] copytool_out thread has finished
[2026-03-19 14:03:39] 2026-03-19 13:03:11,085 | INFO     | [payload] validate_post thread has finished
[2026-03-19 14:03:39] 2026-03-19 13:03:11,213 | INFO     | [job] validate thread has finished
[2026-03-19 14:03:39] 2026-03-19 13:03:11,286 | INFO     | [job] create_data_payload thread has finished
[2026-03-19 14:03:39] 2026-03-19 13:03:11,639 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-19 14:03:39] 2026-03-19 13:03:15,646 | INFO     | [data] queue_monitor thread has finished
[2026-03-19 14:03:39] 2026-03-19 13:03:19,507 | INFO     | job.realtimelogging is not enabled
[2026-03-19 14:03:39] 2026-03-19 13:03:20,512 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-19 14:03:39] 2026-03-19 13:03:23,428 | INFO     | [monitor] cgroup control has ended
[2026-03-19 14:03:39] 2026-03-19 13:03:24,431 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139695244408640)>', '<ExcThread(monitor, started 139694616606464)>']
[2026-03-19 14:03:39] 2026-03-19 13:03:29,450 | INFO     | all workflow threads have been joined
[2026-03-19 14:03:39] 2026-03-19 13:03:29,450 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-19 14:03:39] 2026-03-19 13:03:29,450 | INFO     | traces error code: 0
[2026-03-19 14:03:39] 2026-03-19 13:03:29,450 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-19 14:03:39] 2026-03-19 13:03:39,280 | INFO     | PID=111604 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-19 14:03:39] 2026-03-19 13:03:39,281 | INFO     | found 0 job(s) in 20 queues
[2026-03-19 14:03:39] 2026-03-19 13:03:39,281 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-19 14:03:39] 2026-03-19 13:03:39,281 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-19 14:03:39] 2026-03-19 13:03:39,281 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-19 14:03:39] 2026-03-19 13:03:39,281 | INFO     | [monitor] control thread has ended
[2026-03-19 14:03:39] 2026-03-19 13:03:39,326 [wrapper] ==== pilot stdout END ====
[2026-03-19 14:03:39] 2026-03-19 13:03:39,328 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-19 14:03:39] 2026-03-19 13:03:39,331 [wrapper] pilotpid: 111604
[2026-03-19 14:03:39] 2026-03-19 13:03:39,333 [wrapper] Pilot exit status: 0
[2026-03-19 14:03:39] 2026-03-19 13:03:39,340 [wrapper] pandaids: 7042039413
[2026-03-19 14:03:39] 2026-03-19 13:03:39,356 [wrapper] cleanup supervisor_pilot  122143 111605
[2026-03-19 14:03:39] 2026-03-19 13:03:39,358 [wrapper] Test setup, not cleaning
[2026-03-19 14:03:39] 2026-03-19 13:03:39,361 [wrapper] apfmon messages muted
[2026-03-19 14:03:39] 2026-03-19 13:03:39,363 [wrapper] ==== wrapper stdout END ====
[2026-03-19 14:03:39] 2026-03-19 13:03:39,365 [wrapper] ==== wrapper stderr END ====
[2026-03-19 14:03:39]  *** Error codes and diagnostics ***
[2026-03-19 14:03:39]     "exeErrorCode": 0,
[2026-03-19 14:03:39]     "exeErrorDiag": "",
[2026-03-19 14:03:39]     "pilotErrorCode": 0,
[2026-03-19 14:03:39]     "pilotErrorDiag": "",
[2026-03-19 14:03:39]  *** Listing of results directory ***
[2026-03-19 14:03:39] total 616008
[2026-03-19 14:03:39] -rw-r--r-- 1 boinc boinc    584627 Mar 10 05:09 pilot3.tar.gz
[2026-03-19 14:03:39] -rwx------ 1 boinc boinc     36322 Mar 10 05:15 runpilot2-wrapper.sh
[2026-03-19 14:03:39] -rw-r--r-- 1 boinc boinc      5111 Mar 10 05:16 queuedata.json
[2026-03-19 14:03:39] -rw-r--r-- 1 boinc boinc       100 Mar 19 12:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-19 14:03:39] -rwxr-xr-x 1 boinc boinc      7986 Mar 19 12:45 run_atlas
[2026-03-19 14:03:39] -rw-r--r-- 1 boinc boinc       105 Mar 19 12:45 job.xml
[2026-03-19 14:03:39] -rw-r--r-- 2 boinc boinc 440563233 Mar 19 12:45 EVNT.46701403._001450.pool.root.1
[2026-03-19 14:03:39] drwxrwx--x 2 boinc boinc      4096 Mar 19 12:45 shared
[2026-03-19 14:03:39] -rw-r--r-- 2 boinc boinc    597957 Mar 19 12:45 input.tar.gz
[2026-03-19 14:03:39] -rw-r--r-- 2 boinc boinc     15845 Mar 19 12:45 start_atlas.sh
[2026-03-19 14:03:39] -rw-r--r-- 1 boinc boinc         0 Mar 19 12:45 boinc_setup_complete
[2026-03-19 14:03:39] -rw-r--r-- 1 boinc boinc      6440 Mar 19 12:45 init_data.xml
[2026-03-19 14:03:39] -rw-r--r-- 1 boinc boinc         0 Mar 19 12:45 boinc_lockfile
[2026-03-19 14:03:39] -rw-r--r-- 1 boinc boinc      2563 Mar 19 12:45 pandaJob.out
[2026-03-19 14:03:39] -rw------- 1 boinc boinc   1010732 Mar 19 12:45 agis_schedconf.cvmfs.json
[2026-03-19 14:03:39] -rw------- 1 boinc boinc   1511579 Mar 19 12:45 agis_ddmendpoints.agis.ALL.json
[2026-03-19 14:03:39] -rw------- 1 boinc boinc       419 Mar 19 12:45 workernode_map.json
[2026-03-19 14:03:39] drwx------ 5 boinc boinc      4096 Mar 19 12:45 pilot3
[2026-03-19 14:03:39] -rw------- 1 boinc boinc 184373261 Mar 19 14:02 HITS.48955010._022661.pool.root.1
[2026-03-19 14:03:39] -rw-r--r-- 1 boinc boinc       530 Mar 19 14:02 boinc_task_state.xml
[2026-03-19 14:03:39] -rw------- 1 boinc boinc      1018 Mar 19 14:02 memory_monitor_summary.json
[2026-03-19 14:03:39] -rw------- 1 boinc boinc    276359 Mar 19 14:03 log.48955010._022661.job.log.tgz.1
[2026-03-19 14:03:39] -rw------- 1 boinc boinc      6304 Mar 19 14:03 heartbeat.json
[2026-03-19 14:03:39] -rw-r--r-- 1 boinc boinc      8192 Mar 19 14:03 boinc_mmap_file
[2026-03-19 14:03:39] -rw-r--r-- 1 boinc boinc        27 Mar 19 14:03 wrapper_checkpoint.txt
[2026-03-19 14:03:39] -rw------- 1 boinc boinc       746 Mar 19 14:03 pilotlog.txt
[2026-03-19 14:03:39] -rw------- 1 boinc boinc        95 Mar 19 14:03 pilot_heartbeat.json
[2026-03-19 14:03:39] -rw------- 1 boinc boinc    687572 Mar 19 14:03 log.48955010._022661.job.log.1
[2026-03-19 14:03:39] -rw------- 1 boinc boinc       357 Mar 19 14:03 output.list
[2026-03-19 14:03:39] -rw-r--r-- 1 boinc boinc       620 Mar 19 14:03 runtime_log
[2026-03-19 14:03:39] -rw------- 1 boinc boinc    983040 Mar 19 14:03 result.tar.gz
[2026-03-19 14:03:39] -rw-r--r-- 1 boinc boinc      8901 Mar 19 14:03 runtime_log.err
[2026-03-19 14:03:39] -rw------- 1 boinc boinc       658 Mar 19 14:03 eg8LDmxf3J9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmD3eLDm9B9aVn.diag
[2026-03-19 14:03:39] -rw-r--r-- 1 boinc boinc     11392 Mar 19 14:03 stderr.txt
[2026-03-19 14:03:39] HITS file was successfully produced:
[2026-03-19 14:03:39] -rw------- 1 boinc boinc 184373261 Mar 19 14:02 shared/HITS.pool.root.1
[2026-03-19 14:03:39]  *** Contents of shared directory: ***
[2026-03-19 14:03:39] total 611864
[2026-03-19 14:03:39] -rw-r--r-- 2 boinc boinc 440563233 Mar 19 12:45 ATLAS.root_0
[2026-03-19 14:03:39] -rw-r--r-- 2 boinc boinc    597957 Mar 19 12:45 input.tar.gz
[2026-03-19 14:03:39] -rw-r--r-- 2 boinc boinc     15845 Mar 19 12:45 start_atlas.sh
[2026-03-19 14:03:39] -rw------- 1 boinc boinc 184373261 Mar 19 14:02 HITS.pool.root.1
[2026-03-19 14:03:39] -rw------- 1 boinc boinc    983040 Mar 19 14:03 result.tar.gz
14:03:41 (107558): run_atlas exited; CPU time 13013.685915
14:03:41 (107558): called boinc_finish(0)

</stderr_txt>
]]>

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