Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
14:07:23 (21354): wrapper (7.7.26015): starting
14:07:23 (21354): wrapper: running run_atlas (--nthreads 8)
[2026-03-18 14:07:23] Arguments: --nthreads 8
[2026-03-18 14:07:23] Threads: 8
[2026-03-18 14:07:23] Checking for CVMFS
[2026-03-18 14:07:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-18 14:07:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-18 14:07:24] Running cvmfs_config stat atlas.cern.ch
[2026-03-18 14:07:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-18 14:07:24] 2.11.0.0 18419 67950 96176 157415 2 11 2810282 4096001 4585 130560 0 6699918 99.667 4253408 279 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-18 14:07:24] CVMFS is ok
[2026-03-18 14:07:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-18 14:07:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-18 14:07:24] Further information can be found at the LHC@home message board.
[2026-03-18 14:07:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-18 14:07:24] Checking for apptainer binary...
[2026-03-18 14:07:24] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-18 14:07:24] apptainer is not installed, using version from CVMFS
[2026-03-18 14:07:24] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-18 14:07:24] WARNING: Environment variable TMPDIR already has value [/tmp/job_11335154/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node166
[2026-03-18 14:07:24] apptainer works
[2026-03-18 14:07:24] Set ATHENA_PROC_NUMBER=8
[2026-03-18 14:07:24] Set ATHENA_CORE_NUMBER=8
[2026-03-18 14:07:24] Starting ATLAS job with PandaID=7042039399
[2026-03-18 14:07:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11335154/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 15:09:46]  *** The last 200 lines of the pilot log: ***
[2026-03-18 15:09:46]  guid=71f836d9-df3f-4d67-ad6a-75aef2e3f1b1
[2026-03-18 15:09:46]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-18 15:09:46]  is_altstaged=None
[2026-03-18 15:09:46]  is_tar=False
[2026-03-18 15:09:46]  lfn=log.48955010._022647.job.log.tgz.1
[2026-03-18 15:09:46]  mtime=0
[2026-03-18 15:09:46]  protocol_id=None
[2026-03-18 15:09:46]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-18 15:09:46]  replicas=None
[2026-03-18 15:09:46]  scope=mc23_13p6TeV
[2026-03-18 15:09:46]  status=None
[2026-03-18 15:09:46]  status_code=0
[2026-03-18 15:09:46]  storage_token=
[2026-03-18 15:09:46]  surl=/tmp/job_11335154/atlas/pilot/slots/0/PanDA_Pilot-7042039399/log.48955010._022647.job.log.tgz.1
[2026-03-18 15:09:46]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/69/c9/log.48955010._022647.job.log.tgz.1
[2026-03-18 15:09:46]  workdir=None
[2026-03-18 15:09:46] ]
[2026-03-18 15:09:46] 2026-03-18 14:08:43,083 | INFO     | transferring file log.48955010._022647.job.log.tgz.1 from /tmp/job_11335154/atlas/pilot/slots/0/PanDA_Pilot-7042039399/log.48955010._022647.job.log.tgz.1 to /tmp/j
[2026-03-18 15:09:46] 2026-03-18 14:08:43,083 | INFO     | executing command: /usr/bin/env mv /tmp/job_11335154/atlas/pilot/slots/0/PanDA_Pilot-7042039399/log.48955010._022647.job.log.tgz.1 /tmp/job_11335154/atlas/pilot/sl
[2026-03-18 15:09:46] 2026-03-18 14:08:43,092 | INFO     | adding to output.list: log.48955010._022647.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/69/c9/log.48955010._022647.job.log.tg
[2026-03-18 15:09:46] 2026-03-18 14:08:43,093 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-18 15:09:46] 2026-03-18 14:08:43,093 | INFO     | summary of transferred files:
[2026-03-18 15:09:46] 2026-03-18 14:08:43,093 | INFO     |  -- lfn=log.48955010._022647.job.log.tgz.1, status_code=0, status=transferred
[2026-03-18 15:09:46] 2026-03-18 14:08:43,093 | INFO     | stage-out finished correctly
[2026-03-18 15:09:46] 2026-03-18 14:08:44,083 | INFO     | time since job start (3671s) is within the limit (349056.0s)
[2026-03-18 15:09:46] 2026-03-18 14:08:44,403 | INFO     | monitor loop #277: job 0:7042039399 is in state 'finished'
[2026-03-18 15:09:46] 2026-03-18 14:08:44,404 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-18 15:09:46] 2026-03-18 14:08:45,122 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-18 15:09:46] 2026-03-18 14:08:45,187 | INFO     | job 7042039399 has state=finished
[2026-03-18 15:09:46] 2026-03-18 14:08:45,188 | INFO     | preparing for final server update for job 7042039399 in state='finished'
[2026-03-18 15:09:46] 2026-03-18 14:08:45,188 | INFO     | reading metadata from: /tmp/job_11335154/atlas/pilot/slots/0/PanDA_Pilot-7042039399/jobReport.json
[2026-03-18 15:09:46] 2026-03-18 14:08:45,190 | INFO     | added worker_node to metadata from /tmp/job_11335154/atlas/pilot/slots/0/workernode_map.json
[2026-03-18 15:09:46] 2026-03-18 14:08:45,190 | INFO     | this job has now completed (state=finished)
[2026-03-18 15:09:46] 2026-03-18 14:08:45,190 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-18 15:09:46] 2026-03-18 14:08:45,190 | INFO     | log transfer has been attempted: DONE
[2026-03-18 15:09:46] 2026-03-18 14:08:45,190 | INFO     | job 7042039399 has finished - writing final server update
[2026-03-18 15:09:46] 2026-03-18 14:08:45,190 | INFO     | total number of processed events: 400 (read)
[2026-03-18 15:09:46] 2026-03-18 14:08:45,212 | INFO     | using path: /tmp/job_11335154/atlas/pilot/slots/0/PanDA_Pilot-7042039399/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 15:09:46] 2026-03-18 14:08:45,212 | INFO     | extracted standard info from prmon json
[2026-03-18 15:09:46] 2026-03-18 14:08:45,212 | INFO     | extracted standard memory fields from prmon json
[2026-03-18 15:09:46] 2026-03-18 14:08:45,212 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-18 15:09:46] 2026-03-18 14:08:45,212 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-18 15:09:46] 2026-03-18 14:08:45,212 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-18 15:09:46] 2026-03-18 14:08:45,214 | INFO     | fitting pss+swap vs Time
[2026-03-18 15:09:46] 2026-03-18 14:08:45,214 | INFO     | sum of square deviations: 46147842.0
[2026-03-18 15:09:46] 2026-03-18 14:08:45,214 | INFO     | sum of deviations: -7540710077.999999
[2026-03-18 15:09:46] 2026-03-18 14:08:45,214 | INFO     | mean x: 1773841163.0
[2026-03-18 15:09:46] 2026-03-18 14:08:45,214 | INFO     | mean y: 2649557.3396226414
[2026-03-18 15:09:46] 2026-03-18 14:08:45,214 | INFO     | intersect: 289854164924.0893
[2026-03-18 15:09:46] 2026-03-18 14:08:45,214 | INFO     | chi2: 0.09542915848013049
[2026-03-18 15:09:46] 2026-03-18 14:08:45,214 | INFO     | current memory leak: -163.40 B/s (using 53 data points, chi2=0.10)
[2026-03-18 15:09:46] 2026-03-18 14:08:45,215 | INFO     | could have reported an average CPU frequency of 2349 MHz (6 samples)
[2026-03-18 15:09:46] 2026-03-18 14:08:45,215 | INFO     | ..............................
[2026-03-18 15:09:46] 2026-03-18 14:08:45,215 | INFO     | . Timing measurements:
[2026-03-18 15:09:46] 2026-03-18 14:08:45,215 | INFO     | . get job = 0 s
[2026-03-18 15:09:46] 2026-03-18 14:08:45,215 | INFO     | . initial setup = 3 s
[2026-03-18 15:09:46] 2026-03-18 14:08:45,215 | INFO     | . payload setup = 4 s
[2026-03-18 15:09:46] 2026-03-18 14:08:45,215 | INFO     | . stage-in = 0 s
[2026-03-18 15:09:46] 2026-03-18 14:08:45,215 | INFO     | . payload execution = 3649 s
[2026-03-18 15:09:46] 2026-03-18 14:08:45,215 | INFO     | . stage-out = 0 s
[2026-03-18 15:09:46] 2026-03-18 14:08:45,215 | INFO     | . log creation = 0 s
[2026-03-18 15:09:46] 2026-03-18 14:08:45,215 | INFO     | ..............................
[2026-03-18 15:09:46] 2026-03-18 14:08:45,280 | INFO     | 
[2026-03-18 15:09:46] 2026-03-18 14:08:45,280 | INFO     | job summary report
[2026-03-18 15:09:46] 2026-03-18 14:08:45,280 | INFO     | --------------------------------------------------
[2026-03-18 15:09:46] 2026-03-18 14:08:45,281 | INFO     | PanDA job id: 7042039399
[2026-03-18 15:09:46] 2026-03-18 14:08:45,281 | INFO     | task id: 48955010
[2026-03-18 15:09:46] 2026-03-18 14:08:45,281 | INFO     | errors: (none)
[2026-03-18 15:09:46] 2026-03-18 14:08:45,281 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-18 15:09:46] 2026-03-18 14:08:45,281 | INFO     | pilot state: finished 
[2026-03-18 15:09:46] 2026-03-18 14:08:45,281 | INFO     | transexitcode: 0
[2026-03-18 15:09:46] 2026-03-18 14:08:45,281 | INFO     | exeerrorcode: 0
[2026-03-18 15:09:46] 2026-03-18 14:08:45,281 | INFO     | exeerrordiag: 
[2026-03-18 15:09:46] 2026-03-18 14:08:45,281 | INFO     | exitcode: 0
[2026-03-18 15:09:46] 2026-03-18 14:08:45,281 | INFO     | exitmsg: OK
[2026-03-18 15:09:46] 2026-03-18 14:08:45,281 | INFO     | cpuconsumptiontime: 25841 s
[2026-03-18 15:09:46] 2026-03-18 14:08:45,281 | INFO     | nevents: 400
[2026-03-18 15:09:46] 2026-03-18 14:08:45,281 | INFO     | neventsw: 0
[2026-03-18 15:09:46] 2026-03-18 14:08:45,281 | INFO     | pid: 31754
[2026-03-18 15:09:46] 2026-03-18 14:08:45,281 | INFO     | pgrp: 31754
[2026-03-18 15:09:46] 2026-03-18 14:08:45,281 | INFO     | corecount: 8
[2026-03-18 15:09:46] 2026-03-18 14:08:45,281 | INFO     | event service: False
[2026-03-18 15:09:46] 2026-03-18 14:08:45,281 | INFO     | sizes: {0: 2279759, 1: 2280331, 11: 2280331, 3657: 2306244, 3659: 2315272, 3661: 2315650}
[2026-03-18 15:09:46] 2026-03-18 14:08:45,281 | INFO     | --------------------------------------------------
[2026-03-18 15:09:46] 2026-03-18 14:08:45,282 | INFO     | 
[2026-03-18 15:09:46] 2026-03-18 14:08:45,282 | INFO     | executing command: ls -lF /tmp/job_11335154/atlas/pilot/slots/0
[2026-03-18 15:09:46] 2026-03-18 14:08:45,292 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-18 15:09:46] 2026-03-18 14:08:45,292 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-18 15:09:46] 2026-03-18 14:08:45,292 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-18 15:09:46] 2026-03-18 14:08:45,292 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-18 15:09:46] 2026-03-18 14:08:45,292 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-18 15:09:46] 2026-03-18 14:08:45,293 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-18 15:09:46] 2026-03-18 14:08:45,293 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-18 15:09:46] 2026-03-18 14:08:45,293 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-18 15:09:46] 2026-03-18 14:08:45,293 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-18 15:09:46] 2026-03-18 14:08:45,293 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-18 15:09:46] 2026-03-18 14:08:45,293 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-18 15:09:46] 2026-03-18 14:08:45,293 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-18 15:09:46] 2026-03-18 14:08:45,293 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-18 15:09:46] 2026-03-18 14:08:45,293 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-18 15:09:46] 2026-03-18 14:08:45,293 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-18 15:09:46] 2026-03-18 14:08:45,293 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-18 15:09:46] 2026-03-18 14:08:45,293 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-18 15:09:46] 2026-03-18 14:08:45,293 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-18 15:09:46] 2026-03-18 14:08:45,293 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-18 15:09:46] 2026-03-18 14:08:45,293 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-18 15:09:46] 2026-03-18 14:08:45,294 | INFO     | job 7042039399 has completed (purged errors)
[2026-03-18 15:09:46] 2026-03-18 14:08:45,294 | INFO     | overall cleanup function is called
[2026-03-18 15:09:46] 2026-03-18 14:08:45,437 | INFO     | PID=26148 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-18 15:09:46] 2026-03-18 14:08:45,437 | INFO     | .. there are 8 such processes running
[2026-03-18 15:09:46] 2026-03-18 14:08:46,300 | INFO     | --- collectZombieJob: --- 10, [31754]
[2026-03-18 15:09:46] 2026-03-18 14:08:46,301 | INFO     | zombie collector waiting for pid 31754
[2026-03-18 15:09:46] 2026-03-18 14:08:46,301 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 15:09:46] 2026-03-18 14:08:46,301 | INFO     | collected zombie processes
[2026-03-18 15:09:46] 2026-03-18 14:08:46,301 | INFO     | will attempt to kill all subprocesses of pid=31754
[2026-03-18 15:09:46] 2026-03-18 14:08:46,460 | INFO     | process IDs to be killed: [31754] (in reverse order)
[2026-03-18 15:09:46] 2026-03-18 14:08:46,511 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 15:09:46] 2026-03-18 14:08:46,511 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 15:09:46] 2026-03-18 14:08:46,518 | INFO     | did not find any defunct processes belonging to 31754
[2026-03-18 15:09:46] 2026-03-18 14:08:46,523 | INFO     | did not find any defunct processes belonging to 31754
[2026-03-18 15:09:46] 2026-03-18 14:08:46,523 | INFO     | ready for new job
[2026-03-18 15:09:46] 2026-03-18 14:08:46,523 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 15:09:46] 2026-03-18 14:08:46,524 | INFO     | **************************************
[2026-03-18 15:09:46] 2026-03-18 14:08:46,524 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-18 15:09:46] 2026-03-18 14:08:46,524 | INFO     | **************************************
[2026-03-18 15:09:46] 2026-03-18 14:08:46,524 | INFO     | 
[2026-03-18 15:09:46] 2026-03-18 14:08:46,539 | INFO     | architecture information:
[2026-03-18 15:09:46] 2026-03-18 14:08:46,539 | INFO     | executing command: cat /etc/os-release
[2026-03-18 15:09:46] 2026-03-18 14:08:46,546 | INFO     | cat /etc/os-release:
[2026-03-18 15:09:46] NAME="CentOS Linux"
[2026-03-18 15:09:46] VERSION="7 (Core)"
[2026-03-18 15:09:46] ID="centos"
[2026-03-18 15:09:46] ID_LIKE="rhel fedora"
[2026-03-18 15:09:46] VERSION_ID="7"
[2026-03-18 15:09:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 15:09:46] ANSI_COLOR="0;31"
[2026-03-18 15:09:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 15:09:46] HOME_URL="https://www.centos.org/"
[2026-03-18 15:09:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 15:09:46] 
[2026-03-18 15:09:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 15:09:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 15:09:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 15:09:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 15:09:46] 
[2026-03-18 15:09:46] 2026-03-18 14:08:46,547 | INFO     | **************************************
[2026-03-18 15:09:46] 2026-03-18 14:08:47,049 | INFO     | executing command: df -mP /tmp/job_11335154/atlas/pilot/slots/0
[2026-03-18 15:09:46] 2026-03-18 14:08:47,057 | INFO     | sufficient remaining disk space (222216323072 B)
[2026-03-18 15:09:46] 2026-03-18 14:08:47,058 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 15:09:46] 2026-03-18 14:08:47,058 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 15:09:46] 2026-03-18 14:08:47,058 | INFO     | update_server=False
[2026-03-18 15:09:46] 2026-03-18 14:08:47,058 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 15:09:46] 2026-03-18 14:08:47,058 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 15:09:46] 2026-03-18 14:08:47,058 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 15:09:46] 2026-03-18 14:08:47,058 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 15:09:46] 2026-03-18 14:08:47,083 | INFO     | all job control threads have been joined
[2026-03-18 15:09:46] 2026-03-18 14:08:47,087 | INFO     | all data control threads have been joined
[2026-03-18 15:09:46] 2026-03-18 14:08:47,910 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 15:09:46] 2026-03-18 14:08:47,911 | INFO     | aborting loop
[2026-03-18 15:09:46] 2026-03-18 14:08:48,063 | INFO     | [job] retrieve thread has finished
[2026-03-18 15:09:46] 2026-03-18 14:08:48,064 | INFO     | [job] queue monitor thread has finished
[2026-03-18 15:09:46] 2026-03-18 14:08:48,089 | INFO     | [job] control thread has finished
[2026-03-18 15:09:46] 2026-03-18 14:08:48,093 | INFO     | [data] control thread has finished
[2026-03-18 15:09:46] 2026-03-18 14:08:48,387 | INFO     | all payload control threads have been joined
[2026-03-18 15:09:46] 2026-03-18 14:08:48,426 | INFO     | job.realtimelogging is not enabled
[2026-03-18 15:09:46] 2026-03-18 14:08:48,562 | INFO     | [job] validate thread has finished
[2026-03-18 15:09:46] 2026-03-18 14:08:48,755 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 15:09:46] 2026-03-18 14:08:48,777 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 15:09:46] 2026-03-18 14:08:48,830 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 15:09:46] 2026-03-18 14:08:48,915 | INFO     | [job] job monitor thread has finished
[2026-03-18 15:09:46] 2026-03-18 14:08:49,054 | INFO     | [data] copytool_in thread has finished
[2026-03-18 15:09:46] 2026-03-18 14:08:49,058 | INFO     | [data] copytool_out thread has finished
[2026-03-18 15:09:46] 2026-03-18 14:08:49,241 | INFO     | [payload] validate_post thread has finished
[2026-03-18 15:09:46] 2026-03-18 14:08:49,393 | INFO     | [payload] control thread has finished
[2026-03-18 15:09:46] 2026-03-18 14:08:49,431 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 15:09:46] 2026-03-18 14:08:49,452 | INFO     | [payload] failed_post thread has finished
[2026-03-18 15:09:46] 2026-03-18 14:08:51,063 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 15:09:46] 2026-03-18 14:09:17,695 | INFO     | PID=26148 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-18 15:09:46] 2026-03-18 14:09:17,695 | INFO     | .. there are 8 such processes running
[2026-03-18 15:09:46] 2026-03-18 14:09:17,695 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 15:09:46] 2026-03-18 14:09:17,695 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 15:09:46] 2026-03-18 14:09:17,695 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 15:09:46] 2026-03-18 14:09:39,229 | INFO     | [monitor] cgroup control has ended
[2026-03-18 15:09:46] 2026-03-18 14:09:41,221 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065292032)>']
[2026-03-18 15:09:46] 2026-03-18 14:09:41,808 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 15:09:46] 2026-03-18 14:09:41,809 | INFO     | [monitor] control thread has ended
[2026-03-18 15:09:46] 2026-03-18 14:09:46,246 | INFO     | all workflow threads have been joined
[2026-03-18 15:09:46] 2026-03-18 14:09:46,246 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 15:09:46] 2026-03-18 14:09:46,246 | INFO     | traces error code: 0
[2026-03-18 15:09:46] 2026-03-18 14:09:46,246 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 15:09:46] 2026-03-18 14:09:46,307 [wrapper] ==== pilot stdout END ====
[2026-03-18 15:09:46] 2026-03-18 14:09:46,309 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 15:09:46] 2026-03-18 14:09:46,310 [wrapper] pilotpid: 26148
[2026-03-18 15:09:46] 2026-03-18 14:09:46,312 [wrapper] Pilot exit status: 0
[2026-03-18 15:09:46] 2026-03-18 14:09:46,317 [wrapper] pandaids: 7042039399
[2026-03-18 15:09:46] 2026-03-18 14:09:46,348 [wrapper] cleanup supervisor_pilot  2258 26149
[2026-03-18 15:09:46] 2026-03-18 14:09:46,350 [wrapper] Test setup, not cleaning
[2026-03-18 15:09:46] 2026-03-18 14:09:46,351 [wrapper] apfmon messages muted
[2026-03-18 15:09:46] 2026-03-18 14:09:46,353 [wrapper] ==== wrapper stdout END ====
[2026-03-18 15:09:46] 2026-03-18 14:09:46,355 [wrapper] ==== wrapper stderr END ====
[2026-03-18 15:09:46]  *** Error codes and diagnostics ***
[2026-03-18 15:09:46]     "exeErrorCode": 0,
[2026-03-18 15:09:46]     "exeErrorDiag": "",
[2026-03-18 15:09:46]     "pilotErrorCode": 0,
[2026-03-18 15:09:46]     "pilotErrorDiag": "",
[2026-03-18 15:09:46]  *** Listing of results directory ***
[2026-03-18 15:09:46] total 614520
[2026-03-18 15:09:46] -rw------- 1 mf493845 unix-user    584627 Mar 10 05:09 pilot3.tar.gz
[2026-03-18 15:09:46] -rwx------ 1 mf493845 unix-user     36322 Mar 10 05:15 runpilot2-wrapper.sh
[2026-03-18 15:09:46] -rw------- 1 mf493845 unix-user      5111 Mar 10 05:16 queuedata.json
[2026-03-18 15:09:46] -rw------- 1 mf493845 unix-user       100 Mar 18 12:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 15:09:46] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 18 12:15 run_atlas
[2026-03-18 15:09:46] -rw------- 1 mf493845 unix-user       105 Mar 18 12:15 job.xml
[2026-03-18 15:09:46] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 18 14:07 start_atlas.sh
[2026-03-18 15:09:46] drwxrwx--x 2 mf493845 unix-user       100 Mar 18 14:07 shared
[2026-03-18 15:09:46] -rw-r--r-- 2 mf493845 unix-user    597956 Mar 18 14:07 input.tar.gz
[2026-03-18 15:09:46] -rw-r--r-- 2 mf493845 unix-user 440563233 Mar 18 14:07 EVNT.46701403._001450.pool.root.1
[2026-03-18 15:09:46] -rw------- 1 mf493845 unix-user         0 Mar 18 14:07 boinc_setup_complete
[2026-03-18 15:09:46] -rw------- 1 mf493845 unix-user      6390 Mar 18 14:07 init_data.xml
[2026-03-18 15:09:46] -rw------- 1 mf493845 unix-user      8192 Mar 18 14:07 boinc_mmap_file
[2026-03-18 15:09:46] -rw------- 1 mf493845 unix-user         0 Mar 18 14:07 boinc_lockfile
[2026-03-18 15:09:46] -rw------- 1 mf493845 unix-user      2562 Mar 18 14:07 pandaJob.out
[2026-03-18 15:09:46] -rw------- 1 mf493845 unix-user   1010909 Mar 18 14:07 agis_schedconf.cvmfs.json
[2026-03-18 15:09:46] -rw------- 1 mf493845 unix-user   1511579 Mar 18 14:07 agis_ddmendpoints.agis.ALL.json
[2026-03-18 15:09:46] -rw------- 1 mf493845 unix-user       416 Mar 18 14:07 workernode_map.json
[2026-03-18 15:09:46] drwx------ 5 mf493845 unix-user       440 Mar 18 14:07 pilot3
[2026-03-18 15:09:46] -rw------- 1 mf493845 unix-user 183002810 Mar 18 15:08 HITS.48955010._022647.pool.root.1
[2026-03-18 15:09:46] -rw------- 1 mf493845 unix-user        95 Mar 18 15:08 pilot_heartbeat.json
[2026-03-18 15:09:46] -rw------- 1 mf493845 unix-user      1017 Mar 18 15:08 memory_monitor_summary.json
[2026-03-18 15:09:46] -rw------- 1 mf493845 unix-user    323641 Mar 18 15:08 log.48955010._022647.job.log.tgz.1
[2026-03-18 15:09:46] -rw------- 1 mf493845 unix-user      6327 Mar 18 15:08 heartbeat.json
[2026-03-18 15:09:46] -rw------- 1 mf493845 unix-user      4903 Mar 18 15:09 pilotlog.txt
[2026-03-18 15:09:46] -rw------- 1 mf493845 unix-user    567254 Mar 18 15:09 log.48955010._022647.job.log.1
[2026-03-18 15:09:46] -rw------- 1 mf493845 unix-user       357 Mar 18 15:09 output.list
[2026-03-18 15:09:46] -rw------- 1 mf493845 unix-user       620 Mar 18 15:09 runtime_log
[2026-03-18 15:09:46] -rw------- 1 mf493845 unix-user    911360 Mar 18 15:09 result.tar.gz
[2026-03-18 15:09:46] -rw------- 1 mf493845 unix-user      9219 Mar 18 15:09 runtime_log.err
[2026-03-18 15:09:46] -rw------- 1 mf493845 unix-user       644 Mar 18 15:09 AebLDmxf3J9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmz2eLDmD1rcKn.diag
[2026-03-18 15:09:46] -rw------- 1 mf493845 unix-user     21936 Mar 18 15:09 stderr.txt
[2026-03-18 15:09:46] HITS file was successfully produced:
[2026-03-18 15:09:46] -rw------- 1 mf493845 unix-user 183002810 Mar 18 15:08 shared/HITS.pool.root.1
[2026-03-18 15:09:46]  *** Contents of shared directory: ***
[2026-03-18 15:09:46] total 610448
[2026-03-18 15:09:46] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 18 14:07 start_atlas.sh
[2026-03-18 15:09:46] -rw-r--r-- 2 mf493845 unix-user    597956 Mar 18 14:07 input.tar.gz
[2026-03-18 15:09:46] -rw-r--r-- 2 mf493845 unix-user 440563233 Mar 18 14:07 ATLAS.root_0
[2026-03-18 15:09:46] -rw------- 1 mf493845 unix-user 183002810 Mar 18 15:08 HITS.pool.root.1
[2026-03-18 15:09:46] -rw------- 1 mf493845 unix-user    911360 Mar 18 15:09 result.tar.gz
15:09:48 (21354): run_atlas exited; CPU time 25913.042991
15:09:48 (21354): called boinc_finish(0)

</stderr_txt>
]]>

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