Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:20:09 (21619): wrapper (7.7.26015): starting
05:20:09 (21619): wrapper: running run_atlas (--nthreads 12)
[2026-03-18 05:20:09] Arguments: --nthreads 12
[2026-03-18 05:20:09] Threads: 12
[2026-03-18 05:20:09] Checking for CVMFS
[2026-03-18 05:20:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-18 05:20:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-18 05:20:09] Running cvmfs_config stat atlas.cern.ch
[2026-03-18 05:20:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-18 05:20:09] 2.11.2.0 14820 304118 93540 157409 0 49 18618246 20275201 1 130560 0 134353836 99.939 15052291 32997 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-03-18 05:20:09] CVMFS is ok
[2026-03-18 05:20:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-18 05:20:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-18 05:20:09] Further information can be found at the LHC@home message board.
[2026-03-18 05:20:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-18 05:20:09] Checking for apptainer binary...
[2026-03-18 05:20:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-18 05:20:09] Running /usr/bin/apptainer --version
[2026-03-18 05:20:09] apptainer version 1.3.2-1.el7
[2026-03-18 05:20:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-18 05:20:11] c-205-27.aglt2.org
[2026-03-18 05:20:11] apptainer works
[2026-03-18 05:20:11] Set ATHENA_PROC_NUMBER=12
[2026-03-18 05:20:11] Set ATHENA_CORE_NUMBER=12
[2026-03-18 05:20:11] Starting ATLAS job with PandaID=7042037762
[2026-03-18 05:20:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 06:29:07]  *** The last 200 lines of the pilot log: ***
[2026-03-18 06:29:07]  is_altstaged=None
[2026-03-18 06:29:07]  is_tar=False
[2026-03-18 06:29:07]  lfn=log.48955010._022384.job.log.tgz.1
[2026-03-18 06:29:07]  mtime=0
[2026-03-18 06:29:07]  protocol_id=None
[2026-03-18 06:29:07]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-18 06:29:07]  replicas=None
[2026-03-18 06:29:07]  scope=mc23_13p6TeV
[2026-03-18 06:29:07]  status=None
[2026-03-18 06:29:07]  status_code=0
[2026-03-18 06:29:07]  storage_token=
[2026-03-18 06:29:07]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-7042037762/log.48955010._022384.job.log.tgz.1
[2026-03-18 06:29:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/45/1a/log.48955010._022384.job.log.tgz.1
[2026-03-18 06:29:07]  workdir=None
[2026-03-18 06:29:07] ]
[2026-03-18 06:29:07] 2026-03-18 10:28:32,411 | INFO     | transferring file log.48955010._022384.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-7042037762/log.48955010._022384.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-03-18 06:29:07] 2026-03-18 10:28:32,411 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-7042037762/log.48955010._022384.job.log.tgz.1 /tmp/boinchome/slots/0/log.48955010._022384.job
[2026-03-18 06:29:07] 2026-03-18 10:28:32,434 | INFO     | adding to output.list: log.48955010._022384.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/45/1a/log.48955010._022384.job.log.tg
[2026-03-18 06:29:07] 2026-03-18 10:28:32,434 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-18 06:29:07] 2026-03-18 10:28:32,435 | INFO     | summary of transferred files:
[2026-03-18 06:29:07] 2026-03-18 10:28:32,435 | INFO     |  -- lfn=log.48955010._022384.job.log.tgz.1, status_code=0, status=transferred
[2026-03-18 06:29:07] 2026-03-18 10:28:32,435 | INFO     | stage-out finished correctly
[2026-03-18 06:29:07] 2026-03-18 10:28:32,517 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-18 06:29:07] 2026-03-18 10:28:32,716 | INFO     | PID=25872 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-18 06:29:07] 2026-03-18 10:28:33,716 | INFO     | time since job start (4081s) is within the limit (349056.0s)
[2026-03-18 06:29:07] 2026-03-18 10:28:33,770 | WARNING  | process 30260 can no longer be monitored (due to stat problems) - aborting
[2026-03-18 06:29:07] 2026-03-18 10:28:33,770 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7042037762/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 06:29:07] 2026-03-18 10:28:33,858 | INFO     | number of running child processes to parent process 30260: 1
[2026-03-18 06:29:07] 2026-03-18 10:28:33,858 | INFO     | maximum number of monitored processes: 6
[2026-03-18 06:29:07] 2026-03-18 10:28:33,989 | INFO     | job 7042037762 has state=finished
[2026-03-18 06:29:07] 2026-03-18 10:28:33,989 | INFO     | preparing for final server update for job 7042037762 in state='finished'
[2026-03-18 06:29:07] 2026-03-18 10:28:33,989 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-7042037762/jobReport.json
[2026-03-18 06:29:07] 2026-03-18 10:28:33,992 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-03-18 06:29:07] 2026-03-18 10:28:33,993 | INFO     | this job has now completed (state=finished)
[2026-03-18 06:29:07] 2026-03-18 10:28:33,993 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-18 06:29:07] 2026-03-18 10:28:33,993 | INFO     | log transfer has been attempted: DONE
[2026-03-18 06:29:07] 2026-03-18 10:28:33,993 | INFO     | job 7042037762 has finished - writing final server update
[2026-03-18 06:29:07] 2026-03-18 10:28:33,993 | INFO     | total number of processed events: 400 (read)
[2026-03-18 06:29:07] 2026-03-18 10:28:33,996 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7042037762/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 06:29:07] 2026-03-18 10:28:33,997 | INFO     | extracted standard info from prmon json
[2026-03-18 06:29:07] 2026-03-18 10:28:33,997 | INFO     | extracted standard memory fields from prmon json
[2026-03-18 06:29:07] 2026-03-18 10:28:33,997 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-18 06:29:07] 2026-03-18 10:28:33,997 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-18 06:29:07] 2026-03-18 10:28:33,998 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-18 06:29:07] 2026-03-18 10:28:33,999 | INFO     | fitting pss+swap vs Time
[2026-03-18 06:29:07] 2026-03-18 10:28:33,999 | INFO     | sum of square deviations: 66959395.0
[2026-03-18 06:29:07] 2026-03-18 10:28:33,999 | INFO     | sum of deviations: -3555714643.9999995
[2026-03-18 06:29:07] 2026-03-18 10:28:34,000 | INFO     | mean x: 1773827767.5
[2026-03-18 06:29:07] 2026-03-18 10:28:34,000 | INFO     | mean y: 2899489.6666666665
[2026-03-18 06:29:07] 2026-03-18 10:28:34,000 | INFO     | intersect: 94197677815.15149
[2026-03-18 06:29:07] 2026-03-18 10:28:34,000 | INFO     | chi2: 0.06276847312437897
[2026-03-18 06:29:07] 2026-03-18 10:28:34,000 | INFO     | current memory leak: -53.10 B/s (using 60 data points, chi2=0.06)
[2026-03-18 06:29:07] 2026-03-18 10:28:34,001 | INFO     | could have reported an average CPU frequency of 1740 MHz (6 samples)
[2026-03-18 06:29:07] 2026-03-18 10:28:34,001 | INFO     | ..............................
[2026-03-18 06:29:07] 2026-03-18 10:28:34,001 | INFO     | . Timing measurements:
[2026-03-18 06:29:07] 2026-03-18 10:28:34,001 | INFO     | . get job = 0 s
[2026-03-18 06:29:07] 2026-03-18 10:28:34,001 | INFO     | . initial setup = 7 s
[2026-03-18 06:29:07] 2026-03-18 10:28:34,001 | INFO     | . payload setup = 14 s
[2026-03-18 06:29:07] 2026-03-18 10:28:34,001 | INFO     | . stage-in = 0 s
[2026-03-18 06:29:07] 2026-03-18 10:28:34,002 | INFO     | . payload execution = 4049 s
[2026-03-18 06:29:07] 2026-03-18 10:28:34,002 | INFO     | . stage-out = 0 s
[2026-03-18 06:29:07] 2026-03-18 10:28:34,002 | INFO     | . log creation = 0 s
[2026-03-18 06:29:07] 2026-03-18 10:28:34,002 | INFO     | ..............................
[2026-03-18 06:29:07] 2026-03-18 10:28:34,395 | INFO     | 
[2026-03-18 06:29:07] 2026-03-18 10:28:34,395 | INFO     | job summary report
[2026-03-18 06:29:07] 2026-03-18 10:28:34,395 | INFO     | --------------------------------------------------
[2026-03-18 06:29:07] 2026-03-18 10:28:34,395 | INFO     | PanDA job id: 7042037762
[2026-03-18 06:29:07] 2026-03-18 10:28:34,395 | INFO     | task id: 48955010
[2026-03-18 06:29:07] 2026-03-18 10:28:34,396 | INFO     | errors: (none)
[2026-03-18 06:29:07] 2026-03-18 10:28:34,396 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-18 06:29:07] 2026-03-18 10:28:34,396 | INFO     | pilot state: finished 
[2026-03-18 06:29:07] 2026-03-18 10:28:34,396 | INFO     | transexitcode: 0
[2026-03-18 06:29:07] 2026-03-18 10:28:34,396 | INFO     | exeerrorcode: 0
[2026-03-18 06:29:07] 2026-03-18 10:28:34,396 | INFO     | exeerrordiag: 
[2026-03-18 06:29:07] 2026-03-18 10:28:34,397 | INFO     | exitcode: 0
[2026-03-18 06:29:07] 2026-03-18 10:28:34,397 | INFO     | exitmsg: OK
[2026-03-18 06:29:07] 2026-03-18 10:28:34,397 | INFO     | cpuconsumptiontime: 42194 s
[2026-03-18 06:29:07] 2026-03-18 10:28:34,397 | INFO     | nevents: 400
[2026-03-18 06:29:07] 2026-03-18 10:28:34,397 | INFO     | neventsw: 0
[2026-03-18 06:29:07] 2026-03-18 10:28:34,397 | INFO     | pid: 30260
[2026-03-18 06:29:07] 2026-03-18 10:28:34,398 | INFO     | pgrp: 30260
[2026-03-18 06:29:07] 2026-03-18 10:28:34,398 | INFO     | corecount: 12
[2026-03-18 06:29:07] 2026-03-18 10:28:34,398 | INFO     | event service: False
[2026-03-18 06:29:07] 2026-03-18 10:28:34,398 | INFO     | sizes: {0: 2279971, 1: 2280177, 11: 2280205, 4067: 2306134, 4069: 2315188, 4070: 2315326}
[2026-03-18 06:29:07] 2026-03-18 10:28:34,398 | INFO     | --------------------------------------------------
[2026-03-18 06:29:07] 2026-03-18 10:28:34,398 | INFO     | 
[2026-03-18 06:29:07] 2026-03-18 10:28:34,398 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-18 06:29:07] 2026-03-18 10:28:34,422 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-18 06:29:07] 2026-03-18 10:28:34,423 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-18 06:29:07] 2026-03-18 10:28:34,423 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-18 06:29:07] 2026-03-18 10:28:34,423 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-18 06:29:07] 2026-03-18 10:28:34,423 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-18 06:29:07] 2026-03-18 10:28:34,423 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-18 06:29:07] 2026-03-18 10:28:34,424 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-18 06:29:07] 2026-03-18 10:28:34,424 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-18 06:29:07] 2026-03-18 10:28:34,424 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-18 06:29:07] 2026-03-18 10:28:34,424 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-18 06:29:07] 2026-03-18 10:28:34,424 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-18 06:29:07] 2026-03-18 10:28:34,424 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-18 06:29:07] 2026-03-18 10:28:34,425 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-18 06:29:07] 2026-03-18 10:28:34,425 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-18 06:29:07] 2026-03-18 10:28:34,425 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-18 06:29:07] 2026-03-18 10:28:34,425 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-18 06:29:07] 2026-03-18 10:28:34,425 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-18 06:29:07] 2026-03-18 10:28:34,425 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-18 06:29:07] 2026-03-18 10:28:34,426 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-18 06:29:07] 2026-03-18 10:28:34,426 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-18 06:29:07] 2026-03-18 10:28:34,426 | INFO     | job 7042037762 has completed (purged errors)
[2026-03-18 06:29:07] 2026-03-18 10:28:34,426 | INFO     | overall cleanup function is called
[2026-03-18 06:29:07] 2026-03-18 10:28:35,434 | INFO     | --- collectZombieJob: --- 10, [30260]
[2026-03-18 06:29:07] 2026-03-18 10:28:35,434 | INFO     | zombie collector waiting for pid 30260
[2026-03-18 06:29:07] 2026-03-18 10:28:35,435 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 06:29:07] 2026-03-18 10:28:35,435 | INFO     | collected zombie processes
[2026-03-18 06:29:07] 2026-03-18 10:28:35,435 | INFO     | will attempt to kill all subprocesses of pid=30260
[2026-03-18 06:29:07] 2026-03-18 10:28:35,526 | INFO     | process IDs to be killed: [30260] (in reverse order)
[2026-03-18 06:29:07] 2026-03-18 10:28:35,579 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 06:29:07] 2026-03-18 10:28:35,580 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 06:29:07] 2026-03-18 10:28:35,584 | INFO     | did not find any defunct processes belonging to 30260
[2026-03-18 06:29:07] 2026-03-18 10:28:35,587 | INFO     | did not find any defunct processes belonging to 30260
[2026-03-18 06:29:07] 2026-03-18 10:28:35,587 | INFO     | ready for new job
[2026-03-18 06:29:07] 2026-03-18 10:28:35,588 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 06:29:07] 2026-03-18 10:28:35,589 | INFO     | **************************************
[2026-03-18 06:29:07] 2026-03-18 10:28:35,589 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-18 06:29:07] 2026-03-18 10:28:35,589 | INFO     | **************************************
[2026-03-18 06:29:07] 2026-03-18 10:28:35,589 | INFO     | 
[2026-03-18 06:29:07] 2026-03-18 10:28:35,589 | INFO     | architecture information:
[2026-03-18 06:29:07] 2026-03-18 10:28:35,590 | INFO     | executing command: cat /etc/os-release
[2026-03-18 06:29:07] 2026-03-18 10:28:35,605 | INFO     | cat /etc/os-release:
[2026-03-18 06:29:07] NAME="CentOS Linux"
[2026-03-18 06:29:07] VERSION="7 (Core)"
[2026-03-18 06:29:07] ID="centos"
[2026-03-18 06:29:07] ID_LIKE="rhel fedora"
[2026-03-18 06:29:07] VERSION_ID="7"
[2026-03-18 06:29:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 06:29:07] ANSI_COLOR="0;31"
[2026-03-18 06:29:07] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 06:29:07] HOME_URL="https://www.centos.org/"
[2026-03-18 06:29:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 06:29:07] 
[2026-03-18 06:29:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 06:29:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 06:29:07] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 06:29:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 06:29:07] 
[2026-03-18 06:29:07] 2026-03-18 10:28:35,605 | INFO     | **************************************
[2026-03-18 06:29:07] 2026-03-18 10:28:36,108 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-18 06:29:07] 2026-03-18 10:28:36,129 | INFO     | sufficient remaining disk space (28908191744 B)
[2026-03-18 06:29:07] 2026-03-18 10:28:36,130 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 06:29:07] 2026-03-18 10:28:36,130 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 06:29:07] 2026-03-18 10:28:36,130 | INFO     | update_server=False
[2026-03-18 06:29:07] 2026-03-18 10:28:36,130 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 06:29:07] 2026-03-18 10:28:36,130 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 06:29:07] 2026-03-18 10:28:36,186 | INFO     | all job control threads have been joined
[2026-03-18 06:29:07] 2026-03-18 10:28:36,361 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-18 06:29:07] 2026-03-18 10:28:36,361 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-18 06:29:07] 2026-03-18 10:28:36,361 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 06:29:07] 2026-03-18 10:28:36,362 | INFO     | will abort loop
[2026-03-18 06:29:07] 2026-03-18 10:28:36,493 | INFO     | all payload control threads have been joined
[2026-03-18 06:29:07] 2026-03-18 10:28:36,552 | INFO     | all data control threads have been joined
[2026-03-18 06:29:07] 2026-03-18 10:28:37,135 | INFO     | [job] retrieve thread has finished
[2026-03-18 06:29:07] 2026-03-18 10:28:37,190 | INFO     | [job] control thread has finished
[2026-03-18 06:29:07] 2026-03-18 10:28:37,232 | INFO     | job.realtimelogging is not enabled
[2026-03-18 06:29:07] 2026-03-18 10:28:37,292 | INFO     | [payload] failed_post thread has finished
[2026-03-18 06:29:07] 2026-03-18 10:28:37,367 | INFO     | [job] job monitor thread has finished
[2026-03-18 06:29:07] 2026-03-18 10:28:37,499 | INFO     | [payload] control thread has finished
[2026-03-18 06:29:07] 2026-03-18 10:28:37,507 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 06:29:07] 2026-03-18 10:28:37,557 | INFO     | [data] control thread has finished
[2026-03-18 06:29:07] 2026-03-18 10:28:37,577 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 06:29:07] 2026-03-18 10:28:37,739 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 06:29:07] 2026-03-18 10:28:37,839 | INFO     | [data] copytool_in thread has finished
[2026-03-18 06:29:07] 2026-03-18 10:28:38,136 | INFO     | [data] copytool_out thread has finished
[2026-03-18 06:29:07] 2026-03-18 10:28:38,237 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 06:29:07] 2026-03-18 10:28:38,237 | INFO     | [payload] validate_post thread has finished
[2026-03-18 06:29:07] 2026-03-18 10:28:38,364 | INFO     | [monitor] cgroup control has ended
[2026-03-18 06:29:07] 2026-03-18 10:28:38,383 | INFO     | [job] validate thread has finished
[2026-03-18 06:29:07] 2026-03-18 10:28:38,608 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 06:29:07] 2026-03-18 10:28:39,084 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 06:29:07] 2026-03-18 10:28:40,089 | INFO     | [job] queue monitor thread has finished
[2026-03-18 06:29:07] 2026-03-18 10:28:42,614 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 06:29:07] 2026-03-18 10:28:44,255 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140091614181184)>', '<ExcThread(monitor, started 140090282075904)>']
[2026-03-18 06:29:07] 2026-03-18 10:28:49,274 | INFO     | all workflow threads have been joined
[2026-03-18 06:29:07] 2026-03-18 10:28:49,274 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 06:29:07] 2026-03-18 10:28:49,274 | INFO     | traces error code: 0
[2026-03-18 06:29:07] 2026-03-18 10:28:49,275 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 06:29:07] 2026-03-18 10:29:06,917 | INFO     | PID=25872 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-18 06:29:07] 2026-03-18 10:29:06,918 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 06:29:07] 2026-03-18 10:29:06,918 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 06:29:07] 2026-03-18 10:29:06,918 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 06:29:07] 2026-03-18 10:29:06,918 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 06:29:07] 2026-03-18 10:29:06,918 | INFO     | [monitor] control thread has ended
[2026-03-18 06:29:07] 2026-03-18 10:29:07,007 [wrapper] ==== pilot stdout END ====
[2026-03-18 06:29:07] 2026-03-18 10:29:07,010 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 06:29:07] 2026-03-18 10:29:07,014 [wrapper] pilotpid: 25872
[2026-03-18 06:29:07] 2026-03-18 10:29:07,018 [wrapper] Pilot exit status: 0
[2026-03-18 06:29:07] 2026-03-18 10:29:07,032 [wrapper] pandaids: 7042037762
[2026-03-18 06:29:07] 2026-03-18 10:29:07,074 [wrapper] cleanup supervisor_pilot 18189 25873
[2026-03-18 06:29:07] 2026-03-18 10:29:07,077 [wrapper] Test setup, not cleaning
[2026-03-18 06:29:07] 2026-03-18 10:29:07,081 [wrapper] apfmon messages muted
[2026-03-18 06:29:07] 2026-03-18 10:29:07,085 [wrapper] ==== wrapper stdout END ====
[2026-03-18 06:29:07] 2026-03-18 10:29:07,089 [wrapper] ==== wrapper stderr END ====
[2026-03-18 06:29:07]  *** Error codes and diagnostics ***
[2026-03-18 06:29:07]     "exeErrorCode": 0,
[2026-03-18 06:29:07]     "exeErrorDiag": "",
[2026-03-18 06:29:07]     "pilotErrorCode": 0,
[2026-03-18 06:29:07]     "pilotErrorDiag": "",
[2026-03-18 06:29:07]  *** Listing of results directory ***
[2026-03-18 06:29:07] total 610080
[2026-03-18 06:29:07] -rw-r--r-- 1 boincer umatlas    584627 Mar 10 00:09 pilot3.tar.gz
[2026-03-18 06:29:07] -rwx------ 1 boincer umatlas     36322 Mar 10 00:11 runpilot2-wrapper.sh
[2026-03-18 06:29:07] -rw-r--r-- 1 boincer umatlas      5111 Mar 10 00:11 queuedata.json
[2026-03-18 06:29:07] -rw-r--r-- 1 boincer umatlas       100 Mar 18 05:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 06:29:07] -rwxr-xr-x 1 boincer umatlas      7986 Mar 18 05:20 run_atlas
[2026-03-18 06:29:07] -rw-r--r-- 1 boincer umatlas       105 Mar 18 05:20 job.xml
[2026-03-18 06:29:07] -rw-r--r-- 2 boincer umatlas 439643953 Mar 18 05:20 EVNT.46701403._001445.pool.root.1
[2026-03-18 06:29:07] -rw-r--r-- 2 boincer umatlas     15845 Mar 18 05:20 start_atlas.sh
[2026-03-18 06:29:07] drwxrwx--x 2 boincer umatlas      4096 Mar 18 05:20 shared
[2026-03-18 06:29:07] -rw-r--r-- 2 boincer umatlas    597958 Mar 18 05:20 input.tar.gz
[2026-03-18 06:29:07] -rw-r--r-- 1 boincer umatlas         0 Mar 18 05:20 boinc_lockfile
[2026-03-18 06:29:07] -rw-r--r-- 1 boincer umatlas      2562 Mar 18 05:20 pandaJob.out
[2026-03-18 06:29:07] -rw------- 1 boincer umatlas        57 Mar 18 05:20 setup.sh.local
[2026-03-18 06:29:07] -rw------- 1 boincer umatlas   1011565 Mar 18 05:20 agis_schedconf.cvmfs.json
[2026-03-18 06:29:07] -rw------- 1 boincer umatlas   1511579 Mar 18 05:20 agis_ddmendpoints.agis.ALL.json
[2026-03-18 06:29:07] -rw------- 1 boincer umatlas       445 Mar 18 05:20 workernode_map.json
[2026-03-18 06:29:07] drwx------ 5 boincer umatlas      4096 Mar 18 05:20 pilot3
[2026-03-18 06:29:07] -rw-r--r-- 1 boincer umatlas      5952 Mar 18 06:18 init_data.xml
[2026-03-18 06:29:07] -rw------- 1 boincer umatlas 179189935 Mar 18 06:28 HITS.48955010._022384.pool.root.1
[2026-03-18 06:29:07] -rw-r--r-- 1 boincer umatlas       530 Mar 18 06:28 boinc_task_state.xml
[2026-03-18 06:29:07] -rw------- 1 boincer umatlas        95 Mar 18 06:28 pilot_heartbeat.json
[2026-03-18 06:29:07] -rw------- 1 boincer umatlas      1045 Mar 18 06:28 memory_monitor_summary.json
[2026-03-18 06:29:07] -rw------- 1 boincer umatlas    373742 Mar 18 06:28 log.48955010._022384.job.log.tgz.1
[2026-03-18 06:29:07] -rw------- 1 boincer umatlas      6412 Mar 18 06:28 heartbeat.json
[2026-03-18 06:29:07] -rw-r--r-- 1 boincer umatlas      8192 Mar 18 06:28 boinc_mmap_file
[2026-03-18 06:29:07] -rw-r--r-- 1 boincer umatlas        27 Mar 18 06:28 wrapper_checkpoint.txt
[2026-03-18 06:29:07] -rw------- 1 boincer umatlas       745 Mar 18 06:29 pilotlog.txt
[2026-03-18 06:29:07] -rw------- 1 boincer umatlas    600151 Mar 18 06:29 log.48955010._022384.job.log.1
[2026-03-18 06:29:07] -rw------- 1 boincer umatlas       357 Mar 18 06:29 output.list
[2026-03-18 06:29:07] -rw-r--r-- 1 boincer umatlas       620 Mar 18 06:29 runtime_log
[2026-03-18 06:29:07] -rw------- 1 boincer umatlas    993280 Mar 18 06:29 result.tar.gz
[2026-03-18 06:29:07] -rw------- 1 boincer umatlas       659 Mar 18 06:29 TZFNDmOc3J9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmQxeLDmzUh51n.diag
[2026-03-18 06:29:07] -rw-r--r-- 1 boincer umatlas      9343 Mar 18 06:29 runtime_log.err
[2026-03-18 06:29:07] -rw-r--r-- 1 boincer umatlas     21562 Mar 18 06:29 stderr.txt
[2026-03-18 06:29:07] HITS file was successfully produced:
[2026-03-18 06:29:07] -rw------- 1 boincer umatlas 179189935 Mar 18 06:28 shared/HITS.pool.root.1
[2026-03-18 06:29:07]  *** Contents of shared directory: ***
[2026-03-18 06:29:07] total 605908
[2026-03-18 06:29:07] -rw-r--r-- 2 boincer umatlas 439643953 Mar 18 05:20 ATLAS.root_0
[2026-03-18 06:29:07] -rw-r--r-- 2 boincer umatlas     15845 Mar 18 05:20 start_atlas.sh
[2026-03-18 06:29:07] -rw-r--r-- 2 boincer umatlas    597958 Mar 18 05:20 input.tar.gz
[2026-03-18 06:29:07] -rw------- 1 boincer umatlas 179189935 Mar 18 06:28 HITS.pool.root.1
[2026-03-18 06:29:07] -rw------- 1 boincer umatlas    993280 Mar 18 06:29 result.tar.gz
06:29:09 (21619): run_atlas exited; CPU time 42178.425543
06:29:09 (21619): called boinc_finish(0)

</stderr_txt>
]]>

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