Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:24:57 (1998147): wrapper (7.7.26015): starting
05:24:57 (1998147): wrapper: running run_atlas (--nthreads 3)
[2026-03-19 05:24:57] Arguments: --nthreads 3
[2026-03-19 05:24:57] Threads: 3
[2026-03-19 05:24:57] Checking for CVMFS
[2026-03-19 05:24:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-19 05:24:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-19 05:24:58] Running cvmfs_config stat atlas.cern.ch
[2026-03-19 05:24:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-19 05:24:58] 2.9.2.0 4638 14165 90900 157441 2 49 31670765 36864001 0 130560 0 5274108 99.982 505518 12056 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-19 05:24:58] CVMFS is ok
[2026-03-19 05:24:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-19 05:24:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-19 05:24:58] Further information can be found at the LHC@home message board.
[2026-03-19 05:24:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-19 05:24:58] Checking for apptainer binary...
[2026-03-19 05:24:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-19 05:24:58] Running /usr/bin/apptainer --version
[2026-03-19 05:24:58] apptainer version 1.4.1-1.1
[2026-03-19 05:24:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-19 05:24:58] thA337a
[2026-03-19 05:24:58] apptainer works
[2026-03-19 05:24:58] Set ATHENA_PROC_NUMBER=3
[2026-03-19 05:24:58] Set ATHENA_CORE_NUMBER=3
[2026-03-19 05:24:58] Starting ATLAS job with PandaID=7042069337
[2026-03-19 05:24:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-19 06:41:40]  *** The last 200 lines of the pilot log: ***
[2026-03-19 06:41:40] 2026-03-19 05:41:09,867 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-19 06:41:40] 2026-03-19 05:41:09,867 | INFO     | collected zombie processes
[2026-03-19 06:41:40] 2026-03-19 05:41:09,867 | INFO     | will attempt to kill all subprocesses of pid=2006616
[2026-03-19 06:41:40] 2026-03-19 05:41:09,916 | INFO     | process IDs to be killed: [2006616] (in reverse order)
[2026-03-19 06:41:40] 2026-03-19 05:41:09,943 | WARNING  | found no corresponding commands to process id(s)
[2026-03-19 06:41:40] 2026-03-19 05:41:09,943 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-19 06:41:40] 2026-03-19 05:41:09,945 | INFO     | did not find any defunct processes belonging to 2006616
[2026-03-19 06:41:40] 2026-03-19 05:41:09,946 | INFO     | did not find any defunct processes belonging to 2006616
[2026-03-19 06:41:40] 2026-03-19 05:41:09,946 | INFO     | ready for new job
[2026-03-19 06:41:40] 2026-03-19 05:41:09,946 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-19 06:41:40] 2026-03-19 05:41:09,947 | INFO     | **************************************
[2026-03-19 06:41:40] 2026-03-19 05:41:09,947 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-19 06:41:40] 2026-03-19 05:41:09,947 | INFO     | **************************************
[2026-03-19 06:41:40] 2026-03-19 05:41:09,947 | INFO     | 
[2026-03-19 06:41:40] 2026-03-19 05:41:09,947 | INFO     | architecture information:
[2026-03-19 06:41:40] 2026-03-19 05:41:09,947 | INFO     | executing command: cat /etc/os-release
[2026-03-19 06:41:40] 2026-03-19 05:41:09,956 | INFO     | cat /etc/os-release:
[2026-03-19 06:41:40] NAME="CentOS Linux"
[2026-03-19 06:41:40] VERSION="7 (Core)"
[2026-03-19 06:41:40] ID="centos"
[2026-03-19 06:41:40] ID_LIKE="rhel fedora"
[2026-03-19 06:41:40] VERSION_ID="7"
[2026-03-19 06:41:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-19 06:41:40] ANSI_COLOR="0;31"
[2026-03-19 06:41:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-19 06:41:40] HOME_URL="https://www.centos.org/"
[2026-03-19 06:41:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-19 06:41:40] 
[2026-03-19 06:41:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-19 06:41:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-19 06:41:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-19 06:41:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-19 06:41:40] 
[2026-03-19 06:41:40] 2026-03-19 05:41:09,957 | INFO     | **************************************
[2026-03-19 06:41:40] 2026-03-19 05:41:10,458 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-19 06:41:40] 2026-03-19 05:41:10,470 | INFO     | sufficient remaining disk space (372861042688 B)
[2026-03-19 06:41:40] 2026-03-19 05:41:10,470 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-19 06:41:40] 2026-03-19 05:41:10,470 | INFO     | current server update state: UPDATING_FINAL
[2026-03-19 06:41:40] 2026-03-19 05:41:10,471 | INFO     | update_server=False
[2026-03-19 06:41:40] 2026-03-19 05:41:10,471 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-19 06:41:40] 2026-03-19 05:41:10,471 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-19 06:41:40] 2026-03-19 05:41:10,471 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-19 06:41:40] 2026-03-19 05:41:10,471 | INFO     | aborting loop
[2026-03-19 06:41:40] 2026-03-19 05:41:10,741 | INFO     | all data control threads have been joined
[2026-03-19 06:41:40] 2026-03-19 05:41:11,359 | INFO     | all payload control threads have been joined
[2026-03-19 06:41:40] 2026-03-19 05:41:11,473 | INFO     | [job] job monitor thread has finished
[2026-03-19 06:41:40] 2026-03-19 05:41:11,476 | INFO     | [job] retrieve thread has finished
[2026-03-19 06:41:40] 2026-03-19 05:41:11,500 | INFO     | all job control threads have been joined
[2026-03-19 06:41:40] 2026-03-19 05:41:11,551 | INFO     | [data] copytool_in thread has finished
[2026-03-19 06:41:40] 2026-03-19 05:41:11,567 | INFO     | [payload] execute_payloads thread has finished
[2026-03-19 06:41:40] 2026-03-19 05:41:11,745 | INFO     | [data] control thread has finished
[2026-03-19 06:41:40] 2026-03-19 05:41:11,995 | INFO     | [payload] validate_post thread has finished
[2026-03-19 06:41:40] 2026-03-19 05:41:12,364 | INFO     | [payload] control thread has finished
[2026-03-19 06:41:40] 2026-03-19 05:41:12,474 | INFO     | [data] copytool_out thread has finished
[2026-03-19 06:41:40] 2026-03-19 05:41:12,505 | INFO     | [job] control thread has finished
[2026-03-19 06:41:40] 2026-03-19 05:41:12,872 | INFO     | [job] validate thread has finished
[2026-03-19 06:41:40] 2026-03-19 05:41:12,877 | INFO     | [job] create_data_payload thread has finished
[2026-03-19 06:41:40] 2026-03-19 05:41:12,915 | INFO     | [payload] failed_post thread has finished
[2026-03-19 06:41:40] 2026-03-19 05:41:12,923 | INFO     | [payload] validate_pre thread has finished
[2026-03-19 06:41:40] 2026-03-19 05:41:13,461 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-19 06:41:40] 2026-03-19 05:41:13,740 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-19 06:41:40] 2026-03-19 05:41:14,467 | INFO     | [job] queue monitor thread has finished
[2026-03-19 06:41:40] 2026-03-19 05:41:14,917 | INFO     | [monitor] cgroup control has ended
[2026-03-19 06:41:40] 2026-03-19 05:41:17,746 | INFO     | [data] queue_monitor thread has finished
[2026-03-19 06:41:40] 2026-03-19 05:41:21,330 | INFO     | job.realtimelogging is not enabled
[2026-03-19 06:41:40] 2026-03-19 05:41:22,335 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-19 06:41:40] 2026-03-19 05:41:22,481 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139914027349824)>', '<ExcThread(monitor, started 139913736759040)>']
[2026-03-19 06:41:40] 2026-03-19 05:41:27,501 | INFO     | all workflow threads have been joined
[2026-03-19 06:41:40] 2026-03-19 05:41:27,502 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-19 06:41:40] 2026-03-19 05:41:27,502 | INFO     | traces error code: 0
[2026-03-19 06:41:40] 2026-03-19 05:41:27,502 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-19 06:41:40] 2026-03-19 05:41:40,710 | INFO     | PID=2002191 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-19 06:41:40] 2026-03-19 05:41:40,710 | INFO     | found 0 job(s) in 20 queues
[2026-03-19 06:41:40] 2026-03-19 05:41:40,710 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-19 06:41:40] 2026-03-19 05:41:40,710 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-19 06:41:40] 2026-03-19 05:41:40,710 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-19 06:41:40] 2026-03-19 05:41:40,710 | INFO     | [monitor] control thread has ended
[2026-03-19 06:41:40] 2026-03-19 05:41:40,758 [wrapper] ==== pilot stdout END ====
[2026-03-19 06:41:40] 2026-03-19 05:41:40,760 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-19 06:41:40] 2026-03-19 05:41:40,763 [wrapper] pilotpid: 2002191
[2026-03-19 06:41:40] 2026-03-19 05:41:40,765 [wrapper] Pilot exit status: 0
[2026-03-19 06:41:40] 2026-03-19 05:41:40,772 [wrapper] pandaids: 7042069337
[2026-03-19 06:41:40] 2026-03-19 05:41:40,790 [wrapper] cleanup supervisor_pilot 2012483 2002192
[2026-03-19 06:41:40] 2026-03-19 05:41:40,792 [wrapper] Test setup, not cleaning
[2026-03-19 06:41:40] 2026-03-19 05:41:40,794 [wrapper] apfmon messages muted
[2026-03-19 06:41:40] 2026-03-19 05:41:40,797 [wrapper] ==== wrapper stdout END ====
[2026-03-19 06:41:40] 2026-03-19 05:41:40,799 [wrapper] ==== wrapper stderr END ====
[2026-03-19 06:41:40]  *** Error codes and diagnostics ***
[2026-03-19 06:41:40]     "exeErrorCode": 0,
[2026-03-19 06:41:40]     "exeErrorDiag": "",
[2026-03-19 06:41:40]     "pilotErrorCode": 0,
[2026-03-19 06:41:40]     "pilotErrorDiag": "",
[2026-03-19 06:41:40]  *** Listing of results directory ***
[2026-03-19 06:41:40] total 617176
[2026-03-19 06:41:40] -rw-r--r-- 1 boinc boinc    584627 Mar 10 10:10 pilot3.tar.gz
[2026-03-19 06:41:40] -rw-r--r-- 1 boinc boinc      5111 Mar 10 10:12 queuedata.json
[2026-03-19 06:41:40] -rwx------ 1 boinc boinc     36322 Mar 10 10:12 runpilot2-wrapper.sh
[2026-03-19 06:41:40] -rw-r--r-- 1 boinc boinc       100 Mar 19 05:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-19 06:41:40] -rwxr-xr-x 1 boinc boinc      7986 Mar 19 05:24 run_atlas
[2026-03-19 06:41:40] -rw-r--r-- 1 boinc boinc       105 Mar 19 05:24 job.xml
[2026-03-19 06:41:40] -rw-r--r-- 2 boinc boinc 442558345 Mar 19 05:24 EVNT.46701403._000803.pool.root.1
[2026-03-19 06:41:40] -rw-r--r-- 2 boinc boinc    597954 Mar 19 05:24 input.tar.gz
[2026-03-19 06:41:40] -rw-r--r-- 2 boinc boinc     15845 Mar 19 05:24 start_atlas.sh
[2026-03-19 06:41:40] drwxrwx--x 2 boinc boinc      4096 Mar 19 05:24 shared
[2026-03-19 06:41:40] -rw-r--r-- 1 boinc boinc         0 Mar 19 05:24 boinc_setup_complete
[2026-03-19 06:41:40] -rw-r--r-- 1 boinc boinc      6446 Mar 19 05:24 init_data.xml
[2026-03-19 06:41:40] -rw-r--r-- 1 boinc boinc         0 Mar 19 05:24 boinc_lockfile
[2026-03-19 06:41:40] -rw-r--r-- 1 boinc boinc      2565 Mar 19 05:24 pandaJob.out
[2026-03-19 06:41:40] -rw------- 1 boinc boinc   1010817 Mar 19 05:25 agis_schedconf.cvmfs.json
[2026-03-19 06:41:40] -rw------- 1 boinc boinc   1511579 Mar 19 05:25 agis_ddmendpoints.agis.ALL.json
[2026-03-19 06:41:40] -rw------- 1 boinc boinc       424 Mar 19 05:25 workernode_map.json
[2026-03-19 06:41:40] drwx------ 5 boinc boinc      4096 Mar 19 05:25 pilot3
[2026-03-19 06:41:40] -rw------- 1 boinc boinc 183622030 Mar 19 06:40 HITS.48955006._040262.pool.root.1
[2026-03-19 06:41:40] -rw-r--r-- 1 boinc boinc       530 Mar 19 06:40 boinc_task_state.xml
[2026-03-19 06:41:40] -rw------- 1 boinc boinc      1012 Mar 19 06:41 memory_monitor_summary.json
[2026-03-19 06:41:40] -rw------- 1 boinc boinc    269235 Mar 19 06:41 log.48955006._040262.job.log.tgz.1
[2026-03-19 06:41:40] -rw------- 1 boinc boinc      6301 Mar 19 06:41 heartbeat.json
[2026-03-19 06:41:40] -rw-r--r-- 1 boinc boinc      8192 Mar 19 06:41 boinc_mmap_file
[2026-03-19 06:41:40] -rw-r--r-- 1 boinc boinc        27 Mar 19 06:41 wrapper_checkpoint.txt
[2026-03-19 06:41:40] -rw------- 1 boinc boinc       747 Mar 19 06:41 pilotlog.txt
[2026-03-19 06:41:40] -rw------- 1 boinc boinc        95 Mar 19 06:41 pilot_heartbeat.json
[2026-03-19 06:41:40] -rw------- 1 boinc boinc    671761 Mar 19 06:41 log.48955006._040262.job.log.1
[2026-03-19 06:41:40] -rw------- 1 boinc boinc       357 Mar 19 06:41 output.list
[2026-03-19 06:41:40] -rw-r--r-- 1 boinc boinc       620 Mar 19 06:41 runtime_log
[2026-03-19 06:41:40] -rw------- 1 boinc boinc    962560 Mar 19 06:41 result.tar.gz
[2026-03-19 06:41:40] -rw------- 1 boinc boinc       658 Mar 19 06:41 yYzLDmPJ8J9n9Rq4apOajLDm4fhM0noT9bVooX4SDm6jcLDmCoRnAn.diag
[2026-03-19 06:41:40] -rw-r--r-- 1 boinc boinc      8901 Mar 19 06:41 runtime_log.err
[2026-03-19 06:41:40] -rw-r--r-- 1 boinc boinc     10505 Mar 19 06:41 stderr.txt
[2026-03-19 06:41:40] HITS file was successfully produced:
[2026-03-19 06:41:40] -rw------- 1 boinc boinc 183622030 Mar 19 06:40 shared/HITS.pool.root.1
[2026-03-19 06:41:40]  *** Contents of shared directory: ***
[2026-03-19 06:41:40] total 613052
[2026-03-19 06:41:40] -rw-r--r-- 2 boinc boinc 442558345 Mar 19 05:24 ATLAS.root_0
[2026-03-19 06:41:40] -rw-r--r-- 2 boinc boinc    597954 Mar 19 05:24 input.tar.gz
[2026-03-19 06:41:40] -rw-r--r-- 2 boinc boinc     15845 Mar 19 05:24 start_atlas.sh
[2026-03-19 06:41:40] -rw------- 1 boinc boinc 183622030 Mar 19 06:40 HITS.pool.root.1
[2026-03-19 06:41:40] -rw------- 1 boinc boinc    962560 Mar 19 06:41 result.tar.gz
06:41:42 (1998147): run_atlas exited; CPU time 12705.959901
06:41:42 (1998147): called boinc_finish(0)

</stderr_txt>
]]>

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