Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
15:03:40 (16647): wrapper (7.7.26015): starting
15:03:40 (16647): wrapper: running run_atlas (--nthreads 3)
[2026-03-18 15:03:40] Arguments: --nthreads 3
[2026-03-18 15:03:40] Threads: 3
[2026-03-18 15:03:40] Checking for CVMFS
[2026-03-18 15:03:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-18 15:03:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-18 15:03:43] Running cvmfs_config stat atlas.cern.ch
[2026-03-18 15:03:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-18 15:03:43] 2.13.3.0 2516 443 49244 157417 1 49 3527470 4096001 0 130560 0 60574 99.925 22314 94 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.35.184:3128 1
[2026-03-18 15:03:43] CVMFS is ok
[2026-03-18 15:03:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-18 15:03:43] Checking for apptainer binary...
[2026-03-18 15:03:43] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-18 15:03:43] Running /usr/bin/apptainer --version
[2026-03-18 15:03:43] apptainer version 1.4.5-3.el9
[2026-03-18 15:03:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-18 15:03:43] ahanllin05
[2026-03-18 15:03:43] apptainer works
[2026-03-18 15:03:43] Set ATHENA_PROC_NUMBER=3
[2026-03-18 15:03:43] Set ATHENA_CORE_NUMBER=3
[2026-03-18 15:03:43] Starting ATLAS job with PandaID=7041592512
[2026-03-18 15:03:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-18 17:59:20]  *** The last 200 lines of the pilot log: ***
[2026-03-18 17:59:20] 2026-03-18 16:58:32,733 | INFO     | job 7041592512 has finished - writing final server update
[2026-03-18 17:59:20] 2026-03-18 16:58:32,734 | INFO     | total number of processed events: 400 (read)
[2026-03-18 17:59:20] 2026-03-18 16:58:32,734 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-7041592512/memory_monitor_summary.json (trf name=prmon)
[2026-03-18 17:59:20] 2026-03-18 16:58:32,735 | INFO     | extracted standard info from prmon json
[2026-03-18 17:59:20] 2026-03-18 16:58:32,735 | INFO     | extracted standard memory fields from prmon json
[2026-03-18 17:59:20] 2026-03-18 16:58:32,735 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-18 17:59:20] 2026-03-18 16:58:32,735 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-18 17:59:20] 2026-03-18 16:58:32,735 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-18 17:59:20] 2026-03-18 16:58:32,736 | INFO     | fitting pss+swap vs Time
[2026-03-18 17:59:20] 2026-03-18 16:58:32,736 | INFO     | sum of square deviations: 1577789583.0
[2026-03-18 17:59:20] 2026-03-18 16:58:32,737 | INFO     | sum of deviations: -24039418935.000008
[2026-03-18 17:59:20] 2026-03-18 16:58:32,737 | INFO     | mean x: 1773847870.5
[2026-03-18 17:59:20] 2026-03-18 16:58:32,737 | INFO     | mean y: 2353733.2674418604
[2026-03-18 17:59:20] 2026-03-18 16:58:32,737 | INFO     | intersect: 27028943682.497154
[2026-03-18 17:59:20] 2026-03-18 16:58:32,737 | INFO     | chi2: 2.673759843243304
[2026-03-18 17:59:20] 2026-03-18 16:58:32,737 | INFO     | sum of square deviations: 1444149868.0
[2026-03-18 17:59:20] 2026-03-18 16:58:32,738 | INFO     | sum of deviations: -12085708936.0
[2026-03-18 17:59:20] 2026-03-18 16:58:32,738 | INFO     | mean x: 1773847718.0
[2026-03-18 17:59:20] 2026-03-18 16:58:32,738 | INFO     | mean y: 2367073.5329341316
[2026-03-18 17:59:20] 2026-03-18 16:58:32,738 | INFO     | intersect: 14847230263.684753
[2026-03-18 17:59:20] 2026-03-18 16:58:32,738 | INFO     | chi2: 1.8225042380265377
[2026-03-18 17:59:20] 2026-03-18 16:58:32,738 | INFO     | current chi2=1.8225042380265377 (change=31.837399584256705 %)
[2026-03-18 17:59:20] 2026-03-18 16:58:32,738 | INFO     | sum of square deviations: 1318277740.5
[2026-03-18 17:59:20] 2026-03-18 16:58:32,738 | INFO     | sum of deviations: -11526098321.5
[2026-03-18 17:59:20] 2026-03-18 16:58:32,739 | INFO     | mean x: 1773847565.5
[2026-03-18 17:59:20] 2026-03-18 16:58:32,739 | INFO     | mean y: 2367751.74691358
[2026-03-18 17:59:20] 2026-03-18 16:58:32,739 | INFO     | intersect: 15511649915.270185
[2026-03-18 17:59:20] 2026-03-18 16:58:32,739 | INFO     | chi2: 1.8203784444595466
[2026-03-18 17:59:20] 2026-03-18 16:58:32,739 | INFO     | current chi2=1.8203784444595466 (change=0.11664135109463647 %)
[2026-03-18 17:59:20] 2026-03-18 16:58:32,739 | INFO     | right removable region: 161
[2026-03-18 17:59:20] 2026-03-18 16:58:32,739 | INFO     | sum of square deviations: 1444149868.0
[2026-03-18 17:59:20] 2026-03-18 16:58:32,739 | INFO     | sum of deviations: -46073966486.00001
[2026-03-18 17:59:20] 2026-03-18 16:58:32,739 | INFO     | mean x: 1773848023.0
[2026-03-18 17:59:20] 2026-03-18 16:58:32,739 | INFO     | mean y: 2378444.8682634733
[2026-03-18 17:59:20] 2026-03-18 16:58:32,739 | INFO     | intersect: 56594991285.0748
[2026-03-18 17:59:20] 2026-03-18 16:58:32,740 | INFO     | chi2: 1.1993050337696833
[2026-03-18 17:59:20] 2026-03-18 16:58:32,740 | INFO     | current chi2=1.1993050337696833 (change=55.14537190763882 %)
[2026-03-18 17:59:20] 2026-03-18 16:58:32,740 | INFO     | sum of square deviations: 1318277740.5
[2026-03-18 17:59:20] 2026-03-18 16:58:32,740 | INFO     | sum of deviations: -37463719983.99999
[2026-03-18 17:59:20] 2026-03-18 16:58:32,740 | INFO     | mean x: 1773848175.5
[2026-03-18 17:59:20] 2026-03-18 16:58:32,740 | INFO     | mean y: 2368005.641975309
[2026-03-18 17:59:20] 2026-03-18 16:58:32,740 | INFO     | intersect: 50412800723.60326
[2026-03-18 17:59:20] 2026-03-18 16:58:32,740 | INFO     | chi2: 1.1636917976007082
[2026-03-18 17:59:20] 2026-03-18 16:58:32,740 | INFO     | current chi2=1.1636917976007082 (change=2.9694894264751652 %)
[2026-03-18 17:59:20] 2026-03-18 16:58:32,740 | INFO     | left removable region: 20
[2026-03-18 17:59:20] 2026-03-18 16:58:32,741 | INFO     | sum of square deviations: 869188390.0
[2026-03-18 17:59:20] 2026-03-18 16:58:32,741 | INFO     | sum of deviations: -8222628102.0
[2026-03-18 17:59:20] 2026-03-18 16:58:32,741 | INFO     | mean x: 1773848145.0
[2026-03-18 17:59:20] 2026-03-18 16:58:32,741 | INFO     | mean y: 2358683.879432624
[2026-03-18 17:59:20] 2026-03-18 16:58:32,741 | INFO     | intersect: 16783178323.862856
[2026-03-18 17:59:20] 2026-03-18 16:58:32,741 | INFO     | chi2: 0.1328682458810217
[2026-03-18 17:59:20] 2026-03-18 16:58:32,741 | INFO     | current memory leak: -9.46 B/s (using 141 data points, chi2=0.13)
[2026-03-18 17:59:20] 2026-03-18 16:58:32,741 | INFO     | could have reported an average CPU frequency of 806 MHz (9 samples)
[2026-03-18 17:59:20] 2026-03-18 16:58:32,741 | INFO     | ..............................
[2026-03-18 17:59:20] 2026-03-18 16:58:32,741 | INFO     | . Timing measurements:
[2026-03-18 17:59:20] 2026-03-18 16:58:32,742 | INFO     | . get job = 0 s
[2026-03-18 17:59:20] 2026-03-18 16:58:32,742 | INFO     | . initial setup = 3 s
[2026-03-18 17:59:20] 2026-03-18 16:58:32,742 | INFO     | . payload setup = 5 s
[2026-03-18 17:59:20] 2026-03-18 16:58:32,742 | INFO     | . stage-in = 0 s
[2026-03-18 17:59:20] 2026-03-18 16:58:32,742 | INFO     | . payload execution = 10451 s
[2026-03-18 17:59:20] 2026-03-18 16:58:32,742 | INFO     | . stage-out = 0 s
[2026-03-18 17:59:20] 2026-03-18 16:58:32,742 | INFO     | . log creation = 0 s
[2026-03-18 17:59:20] 2026-03-18 16:58:32,742 | INFO     | ..............................
[2026-03-18 17:59:20] 2026-03-18 16:58:32,775 | INFO     | 
[2026-03-18 17:59:20] 2026-03-18 16:58:32,775 | INFO     | job summary report
[2026-03-18 17:59:20] 2026-03-18 16:58:32,775 | INFO     | --------------------------------------------------
[2026-03-18 17:59:20] 2026-03-18 16:58:32,775 | INFO     | PanDA job id: 7041592512
[2026-03-18 17:59:20] 2026-03-18 16:58:32,775 | INFO     | task id: 48955006
[2026-03-18 17:59:20] 2026-03-18 16:58:32,775 | INFO     | errors: (none)
[2026-03-18 17:59:20] 2026-03-18 16:58:32,775 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-18 17:59:20] 2026-03-18 16:58:32,775 | INFO     | pilot state: finished 
[2026-03-18 17:59:20] 2026-03-18 16:58:32,776 | INFO     | transexitcode: 0
[2026-03-18 17:59:20] 2026-03-18 16:58:32,776 | INFO     | exeerrorcode: 0
[2026-03-18 17:59:20] 2026-03-18 16:58:32,776 | INFO     | exeerrordiag: 
[2026-03-18 17:59:20] 2026-03-18 16:58:32,776 | INFO     | exitcode: 0
[2026-03-18 17:59:20] 2026-03-18 16:58:32,776 | INFO     | exitmsg: OK
[2026-03-18 17:59:20] 2026-03-18 16:58:32,776 | INFO     | cpuconsumptiontime: 30081 s
[2026-03-18 17:59:20] 2026-03-18 16:58:32,776 | INFO     | nevents: 400
[2026-03-18 17:59:20] 2026-03-18 16:58:32,776 | INFO     | neventsw: 0
[2026-03-18 17:59:20] 2026-03-18 16:58:32,776 | INFO     | pid: 25030
[2026-03-18 17:59:20] 2026-03-18 16:58:32,776 | INFO     | pgrp: 25030
[2026-03-18 17:59:20] 2026-03-18 16:58:32,776 | INFO     | corecount: 3
[2026-03-18 17:59:20] 2026-03-18 16:58:32,776 | INFO     | event service: False
[2026-03-18 17:59:20] 2026-03-18 16:58:32,776 | INFO     | sizes: {0: 2279799, 1: 2280260, 11: 2280260, 10460: 2309293, 10462: 2318291, 10466: 2318733}
[2026-03-18 17:59:20] 2026-03-18 16:58:32,776 | INFO     | --------------------------------------------------
[2026-03-18 17:59:20] 2026-03-18 16:58:32,776 | INFO     | 
[2026-03-18 17:59:20] 2026-03-18 16:58:32,776 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2026-03-18 17:59:20] 2026-03-18 16:58:32,787 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-18 17:59:20] 2026-03-18 16:58:32,787 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-18 17:59:20] 2026-03-18 16:58:32,787 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-18 17:59:20] 2026-03-18 16:58:32,787 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-18 17:59:20] 2026-03-18 16:58:32,787 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-18 17:59:20] 2026-03-18 16:58:32,787 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-18 17:59:20] 2026-03-18 16:58:32,788 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-18 17:59:20] 2026-03-18 16:58:32,788 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-18 17:59:20] 2026-03-18 16:58:32,788 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-18 17:59:20] 2026-03-18 16:58:32,788 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-18 17:59:20] 2026-03-18 16:58:32,788 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-18 17:59:20] 2026-03-18 16:58:32,788 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-18 17:59:20] 2026-03-18 16:58:32,788 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-18 17:59:20] 2026-03-18 16:58:32,788 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-18 17:59:20] 2026-03-18 16:58:32,788 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-18 17:59:20] 2026-03-18 16:58:32,788 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-18 17:59:20] 2026-03-18 16:58:32,788 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-18 17:59:20] 2026-03-18 16:58:32,788 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-18 17:59:20] 2026-03-18 16:58:32,788 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-18 17:59:20] 2026-03-18 16:58:32,788 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-18 17:59:20] 2026-03-18 16:58:32,788 | INFO     | job 7041592512 has completed (purged errors)
[2026-03-18 17:59:20] 2026-03-18 16:58:32,788 | INFO     | overall cleanup function is called
[2026-03-18 17:59:20] 2026-03-18 16:58:33,795 | INFO     | --- collectZombieJob: --- 10, [25030]
[2026-03-18 17:59:20] 2026-03-18 16:58:33,795 | INFO     | zombie collector waiting for pid 25030
[2026-03-18 17:59:20] 2026-03-18 16:58:33,795 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-18 17:59:20] 2026-03-18 16:58:33,795 | INFO     | collected zombie processes
[2026-03-18 17:59:20] 2026-03-18 16:58:33,795 | INFO     | will attempt to kill all subprocesses of pid=25030
[2026-03-18 17:59:20] 2026-03-18 16:58:33,816 | INFO     | process IDs to be killed: [25030] (in reverse order)
[2026-03-18 17:59:20] 2026-03-18 16:58:33,832 | WARNING  | found no corresponding commands to process id(s)
[2026-03-18 17:59:20] 2026-03-18 16:58:33,833 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-18 17:59:20] 2026-03-18 16:58:33,834 | INFO     | did not find any defunct processes belonging to 25030
[2026-03-18 17:59:20] 2026-03-18 16:58:33,834 | INFO     | did not find any defunct processes belonging to 25030
[2026-03-18 17:59:20] 2026-03-18 16:58:33,835 | INFO     | ready for new job
[2026-03-18 17:59:20] 2026-03-18 16:58:33,835 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-18 17:59:20] 2026-03-18 16:58:33,836 | INFO     | **************************************
[2026-03-18 17:59:20] 2026-03-18 16:58:33,836 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-18 17:59:20] 2026-03-18 16:58:33,836 | INFO     | **************************************
[2026-03-18 17:59:20] 2026-03-18 16:58:33,836 | INFO     | 
[2026-03-18 17:59:20] 2026-03-18 16:58:33,836 | INFO     | pilot is running in a VM
[2026-03-18 17:59:20] 2026-03-18 16:58:33,836 | INFO     | architecture information:
[2026-03-18 17:59:20] 2026-03-18 16:58:33,836 | INFO     | executing command: cat /etc/os-release
[2026-03-18 17:59:20] 2026-03-18 16:58:33,843 | INFO     | cat /etc/os-release:
[2026-03-18 17:59:20] NAME="CentOS Linux"
[2026-03-18 17:59:20] VERSION="7 (Core)"
[2026-03-18 17:59:20] ID="centos"
[2026-03-18 17:59:20] ID_LIKE="rhel fedora"
[2026-03-18 17:59:20] VERSION_ID="7"
[2026-03-18 17:59:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-18 17:59:20] ANSI_COLOR="0;31"
[2026-03-18 17:59:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-18 17:59:20] HOME_URL="https://www.centos.org/"
[2026-03-18 17:59:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-18 17:59:20] 
[2026-03-18 17:59:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-18 17:59:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-18 17:59:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-18 17:59:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-18 17:59:20] 
[2026-03-18 17:59:20] 2026-03-18 16:58:33,843 | INFO     | **************************************
[2026-03-18 17:59:20] 2026-03-18 16:58:34,346 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2026-03-18 17:59:20] 2026-03-18 16:58:34,353 | INFO     | sufficient remaining disk space (36999004160 B)
[2026-03-18 17:59:20] 2026-03-18 16:58:34,353 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-18 17:59:20] 2026-03-18 16:58:34,353 | INFO     | current server update state: UPDATING_FINAL
[2026-03-18 17:59:20] 2026-03-18 16:58:34,353 | INFO     | update_server=False
[2026-03-18 17:59:20] 2026-03-18 16:58:34,353 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-18 17:59:20] 2026-03-18 16:58:34,354 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-18 17:59:20] 2026-03-18 16:58:34,354 | INFO     | found 0 job(s) in 20 queues
[2026-03-18 17:59:20] 2026-03-18 16:58:34,354 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-18 17:59:20] 2026-03-18 16:58:34,354 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-18 17:59:20] 2026-03-18 16:58:34,354 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-18 17:59:20] 2026-03-18 16:58:34,354 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-18 17:59:20] 2026-03-18 16:58:34,464 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-18 17:59:20] 2026-03-18 16:58:34,464 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-18 17:59:20] 2026-03-18 16:58:34,464 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-18 17:59:20] 2026-03-18 16:58:34,464 | INFO     | will abort loop
[2026-03-18 17:59:20] 2026-03-18 16:58:34,780 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-18 17:59:20] 2026-03-18 16:58:35,099 | INFO     | all payload control threads have been joined
[2026-03-18 17:59:20] 2026-03-18 16:58:35,278 | INFO     | all job control threads have been joined
[2026-03-18 17:59:20] 2026-03-18 16:58:35,342 | INFO     | all data control threads have been joined
[2026-03-18 17:59:20] 2026-03-18 16:58:35,357 | INFO     | [job] queue monitor thread has finished
[2026-03-18 17:59:20] 2026-03-18 16:58:35,357 | INFO     | [job] retrieve thread has finished
[2026-03-18 17:59:20] 2026-03-18 16:58:35,469 | INFO     | [job] job monitor thread has finished
[2026-03-18 17:59:20] 2026-03-18 16:58:35,572 | INFO     | [payload] execute_payloads thread has finished
[2026-03-18 17:59:20] 2026-03-18 16:58:36,058 | INFO     | [job] validate thread has finished
[2026-03-18 17:59:20] 2026-03-18 16:58:36,065 | INFO     | [job] create_data_payload thread has finished
[2026-03-18 17:59:20] 2026-03-18 16:58:36,105 | INFO     | [payload] control thread has finished
[2026-03-18 17:59:20] 2026-03-18 16:58:36,180 | INFO     | [payload] failed_post thread has finished
[2026-03-18 17:59:20] 2026-03-18 16:58:36,262 | INFO     | [payload] validate_pre thread has finished
[2026-03-18 17:59:20] 2026-03-18 16:58:36,283 | INFO     | [job] control thread has finished
[2026-03-18 17:59:20] 2026-03-18 16:58:36,348 | INFO     | [data] control thread has finished
[2026-03-18 17:59:20] 2026-03-18 16:58:36,359 | INFO     | [data] copytool_in thread has finished
[2026-03-18 17:59:20] 2026-03-18 16:58:36,691 | INFO     | [payload] validate_post thread has finished
[2026-03-18 17:59:20] 2026-03-18 16:58:36,786 | INFO     | [data] copytool_out thread has finished
[2026-03-18 17:59:20] 2026-03-18 16:58:36,860 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-18 17:59:20] 2026-03-18 16:58:38,360 | INFO     | [data] queue_monitor thread has finished
[2026-03-18 17:59:20] 2026-03-18 16:59:13,355 | INFO     | [monitor] cgroup control has ended
[2026-03-18 17:59:20] 2026-03-18 16:59:15,027 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140043512051520)>', '<ExcThread(monitor, started 140043138082560)>']
[2026-03-18 17:59:20] 2026-03-18 16:59:15,552 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-18 17:59:20] 2026-03-18 16:59:15,552 | INFO     | [monitor] control thread has ended
[2026-03-18 17:59:20] 2026-03-18 16:59:20,053 | INFO     | all workflow threads have been joined
[2026-03-18 17:59:20] 2026-03-18 16:59:20,053 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-18 17:59:20] 2026-03-18 16:59:20,053 | INFO     | traces error code: 0
[2026-03-18 17:59:20] 2026-03-18 16:59:20,053 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-18 17:59:20] 2026-03-18 16:59:20,108 [wrapper] ==== pilot stdout END ====
[2026-03-18 17:59:20] 2026-03-18 16:59:20,110 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-18 17:59:20] 2026-03-18 16:59:20,111 [wrapper] pilotpid: 20660
[2026-03-18 17:59:20] 2026-03-18 16:59:20,113 [wrapper] Pilot exit status: 0
[2026-03-18 17:59:20] 2026-03-18 16:59:20,119 [wrapper] pandaids: 7041592512
[2026-03-18 17:59:20] 2026-03-18 16:59:20,130 [wrapper] cleanup supervisor_pilot   29860 20661
[2026-03-18 17:59:20] 2026-03-18 16:59:20,132 [wrapper] Test setup, not cleaning
[2026-03-18 17:59:20] 2026-03-18 16:59:20,133 [wrapper] apfmon messages muted
[2026-03-18 17:59:20] 2026-03-18 16:59:20,135 [wrapper] ==== wrapper stdout END ====
[2026-03-18 17:59:20] 2026-03-18 16:59:20,137 [wrapper] ==== wrapper stderr END ====
[2026-03-18 17:59:20]  *** Error codes and diagnostics ***
[2026-03-18 17:59:20]     "exeErrorCode": 0,
[2026-03-18 17:59:20]     "exeErrorDiag": "",
[2026-03-18 17:59:20]     "pilotErrorCode": 0,
[2026-03-18 17:59:20]     "pilotErrorDiag": "",
[2026-03-18 17:59:20]  *** Listing of results directory ***
[2026-03-18 17:59:20] total 630420
[2026-03-18 17:59:20] -rw-r--r-- 1 boinc boinc    584627 Mar 10 03:23 pilot3.tar.gz
[2026-03-18 17:59:20] -rw-r--r-- 1 boinc boinc      5111 Mar 10 03:24 queuedata.json
[2026-03-18 17:59:20] -rwx------ 1 boinc boinc     36322 Mar 10 03:24 runpilot2-wrapper.sh
[2026-03-18 17:59:20] -rw-r--r-- 1 boinc boinc       100 Mar 18 15:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-18 17:59:20] -rwxr-xr-x 1 boinc boinc      7986 Mar 18 15:03 run_atlas
[2026-03-18 17:59:20] -rw-r--r-- 1 boinc boinc       105 Mar 18 15:03 job.xml
[2026-03-18 17:59:20] -rw-r--r-- 2 boinc boinc     15845 Mar 18 15:03 start_atlas.sh
[2026-03-18 17:59:20] drwxrwx--x 2 boinc boinc        68 Mar 18 15:03 shared
[2026-03-18 17:59:20] -rw-r--r-- 2 boinc boinc    597955 Mar 18 15:03 input.tar.gz
[2026-03-18 17:59:20] -rw-r--r-- 1 boinc boinc      6669 Mar 18 15:03 init_data.xml
[2026-03-18 17:59:20] -rw-r--r-- 2 boinc boinc 444636988 Mar 18 15:03 EVNT.46701403._000759.pool.root.1
[2026-03-18 17:59:20] -rw-r--r-- 1 boinc boinc         0 Mar 18 15:03 boinc_setup_complete
[2026-03-18 17:59:20] -rw-r--r-- 1 boinc boinc         0 Mar 18 15:03 boinc_lockfile
[2026-03-18 17:59:20] -rw-r--r-- 1 boinc boinc      2565 Mar 18 15:03 pandaJob.out
[2026-03-18 17:59:20] -rw------- 1 boinc boinc        42 Mar 18 15:03 setup.sh.local
[2026-03-18 17:59:20] -rw------- 1 boinc boinc   1011302 Mar 18 15:03 agis_schedconf.cvmfs.json
[2026-03-18 17:59:20] -rw------- 1 boinc boinc   1511579 Mar 18 15:03 agis_ddmendpoints.agis.ALL.json
[2026-03-18 17:59:20] -rw------- 1 boinc boinc       387 Mar 18 15:03 workernode_map.json
[2026-03-18 17:59:20] drwx------ 5 boinc boinc      4096 Mar 18 15:03 pilot3
[2026-03-18 17:59:20] -rw------- 1 boinc boinc        95 Mar 18 17:57 pilot_heartbeat.json
[2026-03-18 17:59:20] -rw------- 1 boinc boinc 193312728 Mar 18 17:58 HITS.48955006._037981.pool.root.1
[2026-03-18 17:59:20] -rw-r--r-- 1 boinc boinc       531 Mar 18 17:58 boinc_task_state.xml
[2026-03-18 17:59:20] -rw------- 1 boinc boinc       996 Mar 18 17:58 memory_monitor_summary.json
[2026-03-18 17:59:20] -rw------- 1 boinc boinc    350250 Mar 18 17:58 log.48955006._037981.job.log.tgz.1
[2026-03-18 17:59:20] -rw------- 1 boinc boinc      6214 Mar 18 17:58 heartbeat.json
[2026-03-18 17:59:20] -rw-r--r-- 1 boinc boinc        28 Mar 18 17:58 wrapper_checkpoint.txt
[2026-03-18 17:59:20] -rw-r--r-- 1 boinc boinc      8192 Mar 18 17:58 boinc_mmap_file
[2026-03-18 17:59:20] -rw------- 1 boinc boinc      4796 Mar 18 17:59 pilotlog.txt
[2026-03-18 17:59:20] -rw------- 1 boinc boinc   1482320 Mar 18 17:59 log.48955006._037981.job.log.1
[2026-03-18 17:59:20] -rw------- 1 boinc boinc       357 Mar 18 17:59 output.list
[2026-03-18 17:59:20] -rw-r--r-- 1 boinc boinc       620 Mar 18 17:59 runtime_log
[2026-03-18 17:59:20] -rw------- 1 boinc boinc   1853440 Mar 18 17:59 result.tar.gz
[2026-03-18 17:59:20] -rw-r--r-- 1 boinc boinc      9248 Mar 18 17:59 runtime_log.err
[2026-03-18 17:59:20] -rw------- 1 boinc boinc       654 Mar 18 17:59 Q7TMDmlw1J9n9Rq4apOajLDm4fhM0noT9bVooX4SDmIrbLDmYbI9sn.diag
[2026-03-18 17:59:20] -rw-r--r-- 1 boinc boinc     20597 Mar 18 17:59 stderr.txt
[2026-03-18 17:59:20] HITS file was successfully produced:
[2026-03-18 17:59:20] -rw------- 1 boinc boinc 193312728 Mar 18 17:58 shared/HITS.pool.root.1
[2026-03-18 17:59:20]  *** Contents of shared directory: ***
[2026-03-18 17:59:20] total 625416
[2026-03-18 17:59:20] -rw-r--r-- 2 boinc boinc     15845 Mar 18 15:03 start_atlas.sh
[2026-03-18 17:59:20] -rw-r--r-- 2 boinc boinc    597955 Mar 18 15:03 input.tar.gz
[2026-03-18 17:59:20] -rw-r--r-- 2 boinc boinc 444636988 Mar 18 15:03 ATLAS.root_0
[2026-03-18 17:59:20] -rw------- 1 boinc boinc 193312728 Mar 18 17:58 HITS.pool.root.1
[2026-03-18 17:59:20] -rw------- 1 boinc boinc   1853440 Mar 18 17:59 result.tar.gz
17:59:21 (16647): run_atlas exited; CPU time 30142.106867
17:59:21 (16647): called boinc_finish(0)

</stderr_txt>
]]>

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