Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
22:16:44 (1112455): wrapper (7.7.26015): starting
22:16:44 (1112455): wrapper: running run_atlas (--nthreads 12)
[2026-03-19 22:16:44] Arguments: --nthreads 12
[2026-03-19 22:16:44] Threads: 12
[2026-03-19 22:16:44] Checking for CVMFS
[2026-03-19 22:16:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-19 22:16:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-19 22:16:47] Running cvmfs_config stat atlas.cern.ch
[2026-03-19 22:16:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-19 22:16:47] 2.13.3.0 825234 4014 60088 157452 1 50 2966613 4096000 0 130560 0 898792 99.969 131681 1777 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 0
[2026-03-19 22:16:47] CVMFS is ok
[2026-03-19 22:16:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-19 22:16:47] Small home clusters do not require a local http proxy but it is suggested if
[2026-03-19 22:16:47] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-03-19 22:16:47] Further information can be found at the LHC@home message board.
[2026-03-19 22:16:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-19 22:16:47] Checking for apptainer binary...
[2026-03-19 22:16:47] apptainer is not installed, using version from CVMFS
[2026-03-19 22:16:47] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-19 22:16:48] T3600Debian
[2026-03-19 22:16:48] apptainer works
[2026-03-19 22:16:48] Set ATHENA_PROC_NUMBER=12
[2026-03-19 22:16:48] Set ATHENA_CORE_NUMBER=12
[2026-03-19 22:16:48] Starting ATLAS job with PandaID=7058355158
[2026-03-19 22:16:48] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-20 01:01:29]  *** The last 200 lines of the pilot log: ***
[2026-03-20 01:01:29] 2026-03-19 14:30:52,209 | INFO     | sum of deviations: -12725450950.000004
[2026-03-20 01:01:29] 2026-03-19 14:30:52,209 | INFO     | mean x: 1773925736.0
[2026-03-20 01:01:29] 2026-03-19 14:30:52,209 | INFO     | mean y: 2910789.2795031057
[2026-03-20 01:01:29] 2026-03-19 14:30:52,209 | INFO     | intersect: 17447844302.575714
[2026-03-20 01:01:29] 2026-03-19 14:30:52,210 | INFO     | chi2: 3.02886344510024
[2026-03-20 01:01:29] 2026-03-19 14:30:52,211 | INFO     | sum of square deviations: 1177156955.0
[2026-03-20 01:01:29] 2026-03-19 14:30:52,212 | INFO     | sum of deviations: -9323449717.999979
[2026-03-20 01:01:29] 2026-03-19 14:30:52,212 | INFO     | mean x: 1773925583.5
[2026-03-20 01:01:29] 2026-03-19 14:30:52,213 | INFO     | mean y: 2915230.6666666665
[2026-03-20 01:01:29] 2026-03-19 14:30:52,213 | INFO     | intersect: 14052958354.470852
[2026-03-20 01:01:29] 2026-03-19 14:30:52,213 | INFO     | chi2: 3.03219773754703
[2026-03-20 01:01:29] 2026-03-19 14:30:52,214 | INFO     | current chi2=3.03219773754703 (change=-0.11008394756732647 %)
[2026-03-20 01:01:29] 2026-03-19 14:30:52,214 | INFO     | right removable region: 155
[2026-03-20 01:01:29] 2026-03-19 14:30:52,214 | INFO     | sum of square deviations: 1177156955.0
[2026-03-20 01:01:29] 2026-03-19 14:30:52,216 | INFO     | sum of deviations: -58668608883.50001
[2026-03-20 01:01:29] 2026-03-19 14:30:52,216 | INFO     | mean x: 1773925888.5
[2026-03-20 01:01:29] 2026-03-19 14:30:52,216 | INFO     | mean y: 2970531.0705128205
[2026-03-20 01:01:29] 2026-03-19 14:30:52,217 | INFO     | intersect: 88414089964.77571
[2026-03-20 01:01:29] 2026-03-19 14:30:52,217 | INFO     | chi2: 0.4469019143638253
[2026-03-20 01:01:29] 2026-03-19 14:30:52,217 | INFO     | current chi2=0.4469019143638253 (change=85.24522737772237 %)
[2026-03-20 01:01:29] 2026-03-19 14:30:52,218 | INFO     | sum of square deviations: 1067554900.0
[2026-03-20 01:01:29] 2026-03-19 14:30:52,219 | INFO     | sum of deviations: -67513417313.0
[2026-03-20 01:01:29] 2026-03-19 14:30:52,220 | INFO     | mean x: 1773926041.0
[2026-03-20 01:01:29] 2026-03-19 14:30:52,220 | INFO     | mean y: 2982725.6158940396
[2026-03-20 01:01:29] 2026-03-19 14:30:52,220 | INFO     | intersect: 112188135066.19429
[2026-03-20 01:01:29] 2026-03-19 14:30:52,221 | INFO     | chi2: 0.21733907025468843
[2026-03-20 01:01:29] 2026-03-19 14:30:52,221 | INFO     | current chi2=0.21733907025468843 (change=51.36761260822179 %)
[2026-03-20 01:01:29] 2026-03-19 14:30:52,221 | INFO     | sum of square deviations: 964976232.5
[2026-03-20 01:01:29] 2026-03-19 14:30:52,223 | INFO     | sum of deviations: -64869126940.5
[2026-03-20 01:01:29] 2026-03-19 14:30:52,223 | INFO     | mean x: 1773926193.5
[2026-03-20 01:01:29] 2026-03-19 14:30:52,223 | INFO     | mean y: 2978776.3630136987
[2026-03-20 01:01:29] 2026-03-19 14:30:52,223 | INFO     | intersect: 119252592967.48709
[2026-03-20 01:01:29] 2026-03-19 14:30:52,224 | INFO     | chi2: 0.2007822891475365
[2026-03-20 01:01:29] 2026-03-19 14:30:52,224 | INFO     | current chi2=0.2007822891475365 (change=7.617949726089231 %)
[2026-03-20 01:01:29] 2026-03-19 14:30:52,224 | INFO     | left removable region: 30
[2026-03-20 01:01:29] 2026-03-19 14:30:52,225 | INFO     | sum of square deviations: 605592750.0
[2026-03-20 01:01:29] 2026-03-19 14:30:52,226 | INFO     | sum of deviations: -48462926749.00002
[2026-03-20 01:01:29] 2026-03-19 14:30:52,226 | INFO     | mean x: 1773926468.0
[2026-03-20 01:01:29] 2026-03-19 14:30:52,226 | INFO     | mean y: 2967201.648
[2026-03-20 01:01:29] 2026-03-19 14:30:52,227 | INFO     | intersect: 141962507630.08997
[2026-03-20 01:01:29] 2026-03-19 14:30:52,227 | INFO     | chi2: 0.17130642999931348
[2026-03-20 01:01:29] 2026-03-19 14:30:52,227 | INFO     | current memory leak: -80.03 B/s (using 125 data points, chi2=0.17)
[2026-03-20 01:01:29] 2026-03-19 14:30:52,228 | INFO     | could have reported an average CPU frequency of 3299 MHz (9 samples)
[2026-03-20 01:01:29] 2026-03-19 14:30:52,228 | INFO     | ..............................
[2026-03-20 01:01:29] 2026-03-19 14:30:52,229 | INFO     | . Timing measurements:
[2026-03-20 01:01:29] 2026-03-19 14:30:52,229 | INFO     | . get job = 0 s
[2026-03-20 01:01:29] 2026-03-19 14:30:52,229 | INFO     | . initial setup = 5 s
[2026-03-20 01:01:29] 2026-03-19 14:30:52,229 | INFO     | . payload setup = 11 s
[2026-03-20 01:01:29] 2026-03-19 14:30:52,229 | INFO     | . stage-in = 0 s
[2026-03-20 01:01:29] 2026-03-19 14:30:52,229 | INFO     | . payload execution = 9795 s
[2026-03-20 01:01:29] 2026-03-19 14:30:52,230 | INFO     | . stage-out = 0 s
[2026-03-20 01:01:29] 2026-03-19 14:30:52,230 | INFO     | . log creation = 0 s
[2026-03-20 01:01:29] 2026-03-19 14:30:52,230 | INFO     | ..............................
[2026-03-20 01:01:29] 2026-03-19 14:30:52,331 | INFO     | 
[2026-03-20 01:01:29] 2026-03-19 14:30:52,332 | INFO     | job summary report
[2026-03-20 01:01:29] 2026-03-19 14:30:52,332 | INFO     | --------------------------------------------------
[2026-03-20 01:01:29] 2026-03-19 14:30:52,332 | INFO     | PanDA job id: 7058355158
[2026-03-20 01:01:29] 2026-03-19 14:30:52,333 | INFO     | task id: 49191248
[2026-03-20 01:01:29] 2026-03-19 14:30:52,333 | INFO     | errors: (none)
[2026-03-20 01:01:29] 2026-03-19 14:30:52,333 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-20 01:01:29] 2026-03-19 14:30:52,333 | INFO     | pilot state: finished 
[2026-03-20 01:01:29] 2026-03-19 14:30:52,334 | INFO     | transexitcode: 0
[2026-03-20 01:01:29] 2026-03-19 14:30:52,334 | INFO     | exeerrorcode: 0
[2026-03-20 01:01:29] 2026-03-19 14:30:52,334 | INFO     | exeerrordiag: 
[2026-03-20 01:01:29] 2026-03-19 14:30:52,334 | INFO     | exitcode: 0
[2026-03-20 01:01:29] 2026-03-19 14:30:52,334 | INFO     | exitmsg: OK
[2026-03-20 01:01:29] 2026-03-19 14:30:52,334 | INFO     | cpuconsumptiontime: 103486 s
[2026-03-20 01:01:29] 2026-03-19 14:30:52,335 | INFO     | nevents: 400
[2026-03-20 01:01:29] 2026-03-19 14:30:52,335 | INFO     | neventsw: 0
[2026-03-20 01:01:29] 2026-03-19 14:30:52,335 | INFO     | pid: 1120951
[2026-03-20 01:01:29] 2026-03-19 14:30:52,335 | INFO     | pgrp: 1120951
[2026-03-20 01:01:29] 2026-03-19 14:30:52,335 | INFO     | corecount: 12
[2026-03-20 01:01:29] 2026-03-19 14:30:52,336 | INFO     | event service: False
[2026-03-20 01:01:29] 2026-03-19 14:30:52,336 | INFO     | sizes: {0: 2280268, 11: 2280268, 9809: 2308804, 9810: 2308803, 9811: 2317871, 9812: 2318313}
[2026-03-20 01:01:29] 2026-03-19 14:30:52,336 | INFO     | --------------------------------------------------
[2026-03-20 01:01:29] 2026-03-19 14:30:52,336 | INFO     | 
[2026-03-20 01:01:29] 2026-03-19 14:30:52,336 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2026-03-20 01:01:29] 2026-03-19 14:30:52,357 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-20 01:01:29] 2026-03-19 14:30:52,357 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-20 01:01:29] 2026-03-19 14:30:52,357 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-20 01:01:29] 2026-03-19 14:30:52,357 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-20 01:01:29] 2026-03-19 14:30:52,357 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-20 01:01:29] 2026-03-19 14:30:52,357 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-20 01:01:29] 2026-03-19 14:30:52,357 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-20 01:01:29] 2026-03-19 14:30:52,357 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-20 01:01:29] 2026-03-19 14:30:52,358 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-20 01:01:29] 2026-03-19 14:30:52,358 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-20 01:01:29] 2026-03-19 14:30:52,358 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-20 01:01:29] 2026-03-19 14:30:52,358 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-20 01:01:29] 2026-03-19 14:30:52,358 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-20 01:01:29] 2026-03-19 14:30:52,358 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-20 01:01:29] 2026-03-19 14:30:52,358 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-20 01:01:29] 2026-03-19 14:30:52,358 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-20 01:01:29] 2026-03-19 14:30:52,358 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-20 01:01:29] 2026-03-19 14:30:52,358 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-20 01:01:29] 2026-03-19 14:30:52,359 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-20 01:01:29] 2026-03-19 14:30:52,359 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-20 01:01:29] 2026-03-19 14:30:52,359 | INFO     | job 7058355158 has completed (purged errors)
[2026-03-20 01:01:29] 2026-03-19 14:30:52,359 | INFO     | overall cleanup function is called
[2026-03-20 01:01:29] 2026-03-19 14:30:53,369 | INFO     | --- collectZombieJob: --- 10, [1120951]
[2026-03-20 01:01:29] 2026-03-19 14:30:53,369 | INFO     | zombie collector waiting for pid 1120951
[2026-03-20 01:01:29] 2026-03-19 14:30:53,369 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-20 01:01:29] 2026-03-19 14:30:53,369 | INFO     | collected zombie processes
[2026-03-20 01:01:29] 2026-03-19 14:30:53,370 | INFO     | will attempt to kill all subprocesses of pid=1120951
[2026-03-20 01:01:29] 2026-03-19 14:30:53,506 | INFO     | process IDs to be killed: [1120951] (in reverse order)
[2026-03-20 01:01:29] 2026-03-19 14:30:53,543 | WARNING  | found no corresponding commands to process id(s)
[2026-03-20 01:01:29] 2026-03-19 14:30:53,543 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-20 01:01:29] 2026-03-19 14:30:53,546 | INFO     | did not find any defunct processes belonging to 1120951
[2026-03-20 01:01:29] 2026-03-19 14:30:53,548 | INFO     | did not find any defunct processes belonging to 1120951
[2026-03-20 01:01:29] 2026-03-19 14:30:53,548 | INFO     | ready for new job
[2026-03-20 01:01:29] 2026-03-19 14:30:53,548 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-20 01:01:29] 2026-03-19 14:30:53,550 | INFO     | **************************************
[2026-03-20 01:01:29] 2026-03-19 14:30:53,550 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-20 01:01:29] 2026-03-19 14:30:53,550 | INFO     | **************************************
[2026-03-20 01:01:29] 2026-03-19 14:30:53,550 | INFO     | 
[2026-03-20 01:01:29] 2026-03-19 14:30:53,550 | INFO     | architecture information:
[2026-03-20 01:01:29] 2026-03-19 14:30:53,551 | INFO     | executing command: cat /etc/os-release
[2026-03-20 01:01:29] 2026-03-19 14:30:53,567 | INFO     | cat /etc/os-release:
[2026-03-20 01:01:29] NAME="CentOS Linux"
[2026-03-20 01:01:29] VERSION="7 (Core)"
[2026-03-20 01:01:29] ID="centos"
[2026-03-20 01:01:29] ID_LIKE="rhel fedora"
[2026-03-20 01:01:29] VERSION_ID="7"
[2026-03-20 01:01:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-20 01:01:29] ANSI_COLOR="0;31"
[2026-03-20 01:01:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-20 01:01:29] HOME_URL="https://www.centos.org/"
[2026-03-20 01:01:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-20 01:01:29] 
[2026-03-20 01:01:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-20 01:01:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-20 01:01:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-20 01:01:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-20 01:01:29] 
[2026-03-20 01:01:29] 2026-03-19 14:30:53,567 | INFO     | **************************************
[2026-03-20 01:01:29] 2026-03-19 14:30:53,919 | WARNING  | process 1120951 can no longer be monitored (due to stat problems) - aborting
[2026-03-20 01:01:29] 2026-03-19 14:30:53,976 | INFO     | using path: /var/lib/boinc-client/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-20 01:01:29] 2026-03-19 14:30:53,977 | INFO     | using path: /var/lib/boinc-client/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-20 01:01:29] 2026-03-19 14:30:53,977 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-20 01:01:29] 2026-03-19 14:30:53,977 | WARNING  | maxPSS not found in memory monitor output
[2026-03-20 01:01:29] 2026-03-19 14:30:53,977 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc-client/slots/0/PanDA_Pilot-7058355158/payload.stdout) since it has not been created yet
[2026-03-20 01:01:29] 2026-03-19 14:30:53,977 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2026-03-20 01:01:29] 2026-03-19 14:30:53,987 | INFO     | sufficient remaining disk space (905347858432 B)
[2026-03-20 01:01:29] 2026-03-19 14:30:53,987 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-20 01:01:29] 2026-03-19 14:30:53,987 | INFO     | output file size check: skipping output file /var/lib/boinc-client/slots/0/PanDA_Pilot-7058355158/HITS.49191248._000012.pool.root.1 since it does not exist
[2026-03-20 01:01:29] 2026-03-19 14:30:54,050 | INFO     | number of running child processes to parent process 1120951: 1
[2026-03-20 01:01:29] 2026-03-19 14:30:54,050 | INFO     | maximum number of monitored processes: 6
[2026-03-20 01:01:29] 2026-03-19 14:30:54,050 | INFO     | aborting job monitoring since job object (job id=7058355158) has expired
[2026-03-20 01:01:29] 2026-03-19 14:30:54,070 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2026-03-20 01:01:29] 2026-03-19 14:30:54,083 | INFO     | sufficient remaining disk space (905347858432 B)
[2026-03-20 01:01:29] 2026-03-19 14:30:54,084 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-20 01:01:29] 2026-03-19 14:30:54,084 | INFO     | current server update state: UPDATING_FINAL
[2026-03-20 01:01:29] 2026-03-19 14:30:54,084 | INFO     | update_server=False
[2026-03-20 01:01:29] 2026-03-19 14:30:54,085 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-20 01:01:29] 2026-03-19 14:30:54,085 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-20 01:01:29] 2026-03-19 14:30:54,085 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-20 01:01:29] 2026-03-19 14:30:54,085 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-20 01:01:29] 2026-03-19 14:30:54,086 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-20 01:01:29] 2026-03-19 14:30:54,086 | INFO     | will abort loop
[2026-03-20 01:01:29] 2026-03-19 14:30:54,205 | INFO     | all payload control threads have been joined
[2026-03-20 01:01:29] 2026-03-19 14:30:54,291 | INFO     | all data control threads have been joined
[2026-03-20 01:01:29] 2026-03-19 14:30:55,090 | INFO     | [job] retrieve thread has finished
[2026-03-20 01:01:29] 2026-03-19 14:30:55,092 | INFO     | [job] queue monitor thread has finished
[2026-03-20 01:01:29] 2026-03-19 14:30:55,092 | INFO     | [job] job monitor thread has finished
[2026-03-20 01:01:29] 2026-03-19 14:30:55,211 | INFO     | [payload] control thread has finished
[2026-03-20 01:01:29] 2026-03-19 14:30:55,239 | INFO     | [payload] failed_post thread has finished
[2026-03-20 01:01:29] 2026-03-19 14:30:55,297 | INFO     | [data] control thread has finished
[2026-03-20 01:01:29] 2026-03-19 14:30:55,315 | INFO     | [payload] validate_post thread has finished
[2026-03-20 01:01:29] 2026-03-19 14:30:55,613 | INFO     | all job control threads have been joined
[2026-03-20 01:01:29] 2026-03-19 14:30:55,710 | INFO     | [job] validate thread has finished
[2026-03-20 01:01:29] 2026-03-19 14:30:56,012 | INFO     | [job] create_data_payload thread has finished
[2026-03-20 01:01:29] 2026-03-19 14:30:56,042 | INFO     | [data] copytool_in thread has finished
[2026-03-20 01:01:29] 2026-03-19 14:30:56,092 | INFO     | [data] copytool_out thread has finished
[2026-03-20 01:01:29] 2026-03-19 14:30:56,095 | INFO     | [payload] validate_pre thread has finished
[2026-03-20 01:01:29] 2026-03-19 14:30:56,401 | INFO     | [payload] execute_payloads thread has finished
[2026-03-20 01:01:29] 2026-03-19 14:30:56,512 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-20 01:01:29] 2026-03-19 14:30:56,619 | INFO     | [job] control thread has finished
[2026-03-20 01:01:29] 2026-03-19 14:30:58,092 | INFO     | [data] queue_monitor thread has finished
[2026-03-20 01:01:29] 2026-03-19 14:31:24,030 | INFO     | PID=1116526 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-20 01:01:29] 2026-03-19 14:31:24,031 | INFO     | found 0 job(s) in 20 queues
[2026-03-20 01:01:29] 2026-03-19 14:31:24,031 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-20 01:01:29] 2026-03-19 14:31:24,031 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-20 01:01:29] 2026-03-19 14:31:24,107 | INFO     | [monitor] cgroup control has ended
[2026-03-20 01:01:29] 2026-03-19 14:31:24,678 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140432350639936)>', '<ExcThread(monitor, started 140431513863936)>']
[2026-03-20 01:01:29] 2026-03-19 14:31:25,036 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-20 01:01:29] 2026-03-19 14:31:25,036 | INFO     | [monitor] control thread has ended
[2026-03-20 01:01:29] 2026-03-19 14:31:29,703 | INFO     | all workflow threads have been joined
[2026-03-20 01:01:29] 2026-03-19 14:31:29,704 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-20 01:01:29] 2026-03-19 14:31:29,705 | INFO     | traces error code: 0
[2026-03-20 01:01:29] 2026-03-19 14:31:29,705 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-20 01:01:29] 2026-03-19 14:31:29,813 [wrapper] ==== pilot stdout END ====
[2026-03-20 01:01:29] 2026-03-19 14:31:29,817 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-20 01:01:29] 2026-03-19 14:31:29,822 [wrapper] pilotpid: 1116526
[2026-03-20 01:01:29] 2026-03-19 14:31:29,826 [wrapper] Pilot exit status: 0
[2026-03-20 01:01:29] 2026-03-19 14:31:29,840 [wrapper] pandaids: 7058355158
[2026-03-20 01:01:29] 2026-03-19 14:31:29,881 [wrapper] cleanup supervisor_pilot 1127290 1116527
[2026-03-20 01:01:29] 2026-03-19 14:31:29,885 [wrapper] Test setup, not cleaning
[2026-03-20 01:01:29] 2026-03-19 14:31:29,890 [wrapper] apfmon messages muted
[2026-03-20 01:01:29] 2026-03-19 14:31:29,894 [wrapper] ==== wrapper stdout END ====
[2026-03-20 01:01:29] 2026-03-19 14:31:29,899 [wrapper] ==== wrapper stderr END ====
[2026-03-20 01:01:29]  *** Error codes and diagnostics ***
[2026-03-20 01:01:29]     "exeErrorCode": 0,
[2026-03-20 01:01:29]     "exeErrorDiag": "",
[2026-03-20 01:01:29]     "pilotErrorCode": 0,
[2026-03-20 01:01:29]     "pilotErrorDiag": "",
[2026-03-20 01:01:29]  *** Listing of results directory ***
[2026-03-20 01:01:29] total 463764
[2026-03-20 01:01:29] -rw-r--r-- 1 boinc boinc    585013 Mar 18 14:41 pilot3.tar.gz
[2026-03-20 01:01:29] -rwx------ 1 boinc boinc     36322 Mar 18 14:44 runpilot2-wrapper.sh
[2026-03-20 01:01:29] -rw-r--r-- 1 boinc boinc      5111 Mar 18 14:47 queuedata.json
[2026-03-20 01:01:29] -rw-r--r-- 1 boinc boinc       100 Mar 19 22:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-20 01:01:29] -rwxr-xr-x 1 boinc boinc      7986 Mar 19 22:16 run_atlas
[2026-03-20 01:01:29] -rw-r--r-- 1 boinc boinc       105 Mar 19 22:16 job.xml
[2026-03-20 01:01:29] -rw-r--r-- 2 boinc boinc     15845 Mar 19 22:16 start_atlas.sh
[2026-03-20 01:01:29] drwxrwx--x 2 boinc boinc      4096 Mar 19 22:16 shared
[2026-03-20 01:01:29] -rw-r--r-- 2 boinc boinc    597529 Mar 19 22:16 input.tar.gz
[2026-03-20 01:01:29] -rw-r--r-- 1 boinc boinc      6477 Mar 19 22:16 init_data.xml
[2026-03-20 01:01:29] -rw-r--r-- 2 boinc boinc 249652877 Mar 19 22:16 EVNT.49126309._000001.pool.root.1
[2026-03-20 01:01:29] -rw-r--r-- 1 boinc boinc         0 Mar 19 22:16 boinc_lockfile
[2026-03-20 01:01:29] -rw-r--r-- 1 boinc boinc      2585 Mar 19 22:16 pandaJob.out
[2026-03-20 01:01:29] -rw------- 1 boinc boinc   1010732 Mar 19 22:17 agis_schedconf.cvmfs.json
[2026-03-20 01:01:29] -rw------- 1 boinc boinc   1511579 Mar 19 22:17 agis_ddmendpoints.agis.ALL.json
[2026-03-20 01:01:29] -rw------- 1 boinc boinc       431 Mar 19 22:17 workernode_map.json
[2026-03-20 01:01:29] drwx------ 5 boinc boinc      4096 Mar 19 22:17 pilot3
[2026-03-20 01:01:29] -rw------- 1 boinc boinc 217606104 Mar 20 01:00 HITS.49191248._000012.pool.root.1
[2026-03-20 01:01:29] -rw------- 1 boinc boinc      1018 Mar 20 01:00 memory_monitor_summary.json
[2026-03-20 01:01:29] -rw-r--r-- 1 boinc boinc       530 Mar 20 01:00 boinc_task_state.xml
[2026-03-20 01:01:29] -rw------- 1 boinc boinc    456268 Mar 20 01:00 log.49191248._000012.job.log.tgz.1
[2026-03-20 01:01:29] -rw------- 1 boinc boinc      6322 Mar 20 01:00 heartbeat.json
[2026-03-20 01:01:29] -rw-r--r-- 1 boinc boinc      8192 Mar 20 01:01 boinc_mmap_file
[2026-03-20 01:01:29] -rw-r--r-- 1 boinc boinc        28 Mar 20 01:01 wrapper_checkpoint.txt
[2026-03-20 01:01:29] -rw------- 1 boinc boinc        95 Mar 20 01:01 pilot_heartbeat.json
[2026-03-20 01:01:29] -rw------- 1 boinc boinc      6273 Mar 20 01:01 pilotlog.txt
[2026-03-20 01:01:29] -rw------- 1 boinc boinc   1390272 Mar 20 01:01 log.49191248._000012.job.log.1
[2026-03-20 01:01:29] -rw------- 1 boinc boinc       357 Mar 20 01:01 output.list
[2026-03-20 01:01:29] -rw-r--r-- 1 boinc boinc       620 Mar 20 01:01 runtime_log
[2026-03-20 01:01:29] -rw------- 1 boinc boinc   1863680 Mar 20 01:01 result.tar.gz
[2026-03-20 01:01:29] -rw-r--r-- 1 boinc boinc      8937 Mar 20 01:01 runtime_log.err
[2026-03-20 01:01:29] -rw------- 1 boinc boinc       655 Mar 20 01:01 j5qMDmtTxM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmcj1LDm2Ptqhn.diag
[2026-03-20 01:01:29] -rw-r--r-- 1 boinc boinc     21558 Mar 20 01:01 stderr.txt
[2026-03-20 01:01:29] HITS file was successfully produced:
[2026-03-20 01:01:30] -rw------- 1 boinc boinc 217606104 Mar 20 01:00 shared/HITS.pool.root.1
[2026-03-20 01:01:30]  *** Contents of shared directory: ***
[2026-03-20 01:01:30] total 458740
[2026-03-20 01:01:30] -rw-r--r-- 2 boinc boinc     15845 Mar 19 22:16 start_atlas.sh
[2026-03-20 01:01:30] -rw-r--r-- 2 boinc boinc    597529 Mar 19 22:16 input.tar.gz
[2026-03-20 01:01:30] -rw-r--r-- 2 boinc boinc 249652877 Mar 19 22:16 ATLAS.root_0
[2026-03-20 01:01:30] -rw------- 1 boinc boinc 217606104 Mar 20 01:00 HITS.pool.root.1
[2026-03-20 01:01:30] -rw------- 1 boinc boinc   1863680 Mar 20 01:01 result.tar.gz
01:01:31 (1112455): run_atlas exited; CPU time 103635.702707
01:01:31 (1112455): called boinc_finish(0)

</stderr_txt>
]]>

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