Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:06:27 (4580): wrapper (7.7.26015): starting
19:06:27 (4580): wrapper: running run_atlas (--nthreads 3)
[2026-03-19 19:06:27] Arguments: --nthreads 3
[2026-03-19 19:06:27] Threads: 3
[2026-03-19 19:06:27] Checking for CVMFS
[2026-03-19 19:06:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-19 19:06:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-19 19:06:27] Running cvmfs_config stat atlas.cern.ch
[2026-03-19 19:06:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-19 19:06:28] 2.9.2.0 3852884 4562 80768 157465 2 49 26871501 36864001 0 130560 0 1141119 99.974 158517 12974 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-19 19:06:28] CVMFS is ok
[2026-03-19 19:06:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-19 19:06:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-19 19:06:28] Further information can be found at the LHC@home message board.
[2026-03-19 19:06:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-19 19:06:28] Checking for apptainer binary...
[2026-03-19 19:06:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-19 19:06:28] Running /usr/bin/apptainer --version
[2026-03-19 19:06:28] apptainer version 1.4.1-1.1
[2026-03-19 19:06:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-19 19:06:28] cosA121b
[2026-03-19 19:06:28] apptainer works
[2026-03-19 19:06:28] Set ATHENA_PROC_NUMBER=3
[2026-03-19 19:06:28] Set ATHENA_CORE_NUMBER=3
[2026-03-19 19:06:28] Starting ATLAS job with PandaID=7041222276
[2026-03-19 19:06:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-19 20:26:49]  *** The last 200 lines of the pilot log: ***
[2026-03-19 20:26:49] 2026-03-19 19:25:48,023 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-19 20:26:49] 2026-03-19 19:25:48,024 | INFO     | did not find any defunct processes belonging to 13062
[2026-03-19 20:26:49] 2026-03-19 19:25:48,025 | INFO     | did not find any defunct processes belonging to 13062
[2026-03-19 20:26:49] 2026-03-19 19:25:48,025 | INFO     | ready for new job
[2026-03-19 20:26:49] 2026-03-19 19:25:48,025 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-19 20:26:49] 2026-03-19 19:25:48,026 | INFO     | **************************************
[2026-03-19 20:26:49] 2026-03-19 19:25:48,026 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-19 20:26:49] 2026-03-19 19:25:48,026 | INFO     | **************************************
[2026-03-19 20:26:49] 2026-03-19 19:25:48,026 | INFO     | 
[2026-03-19 20:26:49] 2026-03-19 19:25:48,026 | INFO     | architecture information:
[2026-03-19 20:26:49] 2026-03-19 19:25:48,026 | INFO     | executing command: cat /etc/os-release
[2026-03-19 20:26:49] 2026-03-19 19:25:48,035 | INFO     | cat /etc/os-release:
[2026-03-19 20:26:49] NAME="CentOS Linux"
[2026-03-19 20:26:49] VERSION="7 (Core)"
[2026-03-19 20:26:49] ID="centos"
[2026-03-19 20:26:49] ID_LIKE="rhel fedora"
[2026-03-19 20:26:49] VERSION_ID="7"
[2026-03-19 20:26:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-19 20:26:49] ANSI_COLOR="0;31"
[2026-03-19 20:26:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-19 20:26:49] HOME_URL="https://www.centos.org/"
[2026-03-19 20:26:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-19 20:26:49] 
[2026-03-19 20:26:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-19 20:26:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-19 20:26:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-19 20:26:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-19 20:26:49] 
[2026-03-19 20:26:49] 2026-03-19 19:25:48,036 | INFO     | **************************************
[2026-03-19 20:26:49] 2026-03-19 19:25:48,539 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-19 20:26:49] 2026-03-19 19:25:48,551 | INFO     | sufficient remaining disk space (331642568704 B)
[2026-03-19 20:26:49] 2026-03-19 19:25:48,551 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-19 20:26:49] 2026-03-19 19:25:48,551 | INFO     | current server update state: UPDATING_FINAL
[2026-03-19 20:26:49] 2026-03-19 19:25:48,551 | INFO     | update_server=False
[2026-03-19 20:26:49] 2026-03-19 19:25:48,551 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-19 20:26:49] 2026-03-19 19:25:48,551 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-19 20:26:49] 2026-03-19 19:25:48,551 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-19 20:26:49] 2026-03-19 19:25:48,551 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-19 20:26:49] 2026-03-19 19:25:48,552 | INFO     | aborting loop
[2026-03-19 20:26:49] 2026-03-19 19:25:49,174 | INFO     | all job control threads have been joined
[2026-03-19 20:26:49] 2026-03-19 19:25:49,442 | INFO     | all payload control threads have been joined
[2026-03-19 20:26:49] 2026-03-19 19:25:49,556 | INFO     | all data control threads have been joined
[2026-03-19 20:26:49] 2026-03-19 19:25:49,557 | INFO     | [job] retrieve thread has finished
[2026-03-19 20:26:49] 2026-03-19 19:25:49,557 | INFO     | [job] queue monitor thread has finished
[2026-03-19 20:26:49] 2026-03-19 19:25:49,557 | INFO     | [job] job monitor thread has finished
[2026-03-19 20:26:49] 2026-03-19 19:25:49,889 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-19 20:26:49] 2026-03-19 19:25:49,895 | INFO     | [payload] failed_post thread has finished
[2026-03-19 20:26:49] 2026-03-19 19:25:50,158 | INFO     | [job] create_data_payload thread has finished
[2026-03-19 20:26:49] 2026-03-19 19:25:50,158 | INFO     | [job] validate thread has finished
[2026-03-19 20:26:49] 2026-03-19 19:25:50,179 | INFO     | [job] control thread has finished
[2026-03-19 20:26:49] 2026-03-19 19:25:50,317 | INFO     | [payload] validate_pre thread has finished
[2026-03-19 20:26:49] 2026-03-19 19:25:50,378 | INFO     | [data] copytool_in thread has finished
[2026-03-19 20:26:49] 2026-03-19 19:25:50,448 | INFO     | [payload] control thread has finished
[2026-03-19 20:26:49] 2026-03-19 19:25:50,561 | INFO     | [data] control thread has finished
[2026-03-19 20:26:49] 2026-03-19 19:25:50,575 | INFO     | [payload] execute_payloads thread has finished
[2026-03-19 20:26:49] 2026-03-19 19:25:50,801 | INFO     | [payload] validate_post thread has finished
[2026-03-19 20:26:49] 2026-03-19 19:25:51,074 | INFO     | job.realtimelogging is not enabled
[2026-03-19 20:26:49] 2026-03-19 19:25:51,895 | INFO     | [data] copytool_out thread has finished
[2026-03-19 20:26:49] 2026-03-19 19:25:52,080 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-19 20:26:49] 2026-03-19 19:25:52,558 | INFO     | [data] queue_monitor thread has finished
[2026-03-19 20:26:49] 2026-03-19 19:26:18,528 | INFO     | PID=8639 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-19 20:26:49] 2026-03-19 19:26:18,528 | INFO     | found 0 job(s) in 20 queues
[2026-03-19 20:26:49] 2026-03-19 19:26:18,528 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-19 20:26:49] 2026-03-19 19:26:18,528 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-19 20:26:49] 2026-03-19 19:26:43,091 | INFO     | [monitor] cgroup control has ended
[2026-03-19 20:26:49] 2026-03-19 19:26:44,097 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140515366307648)>', '<ExcThread(monitor, started 140514728855296)>']
[2026-03-19 20:26:49] 2026-03-19 19:26:44,665 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-19 20:26:49] 2026-03-19 19:26:44,666 | INFO     | [monitor] control thread has ended
[2026-03-19 20:26:49] 2026-03-19 19:26:49,123 | INFO     | all workflow threads have been joined
[2026-03-19 20:26:49] 2026-03-19 19:26:49,123 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-19 20:26:49] 2026-03-19 19:26:49,123 | INFO     | traces error code: 0
[2026-03-19 20:26:49] 2026-03-19 19:26:49,123 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-19 20:26:49] 2026-03-19 19:26:49,174 [wrapper] ==== pilot stdout END ====
[2026-03-19 20:26:49] 2026-03-19 19:26:49,177 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-19 20:26:49] 2026-03-19 19:26:49,179 [wrapper] pilotpid: 8639
[2026-03-19 20:26:49] 2026-03-19 19:26:49,181 [wrapper] Pilot exit status: 0
[2026-03-19 20:26:49] 2026-03-19 19:26:49,188 [wrapper] pandaids: 7041222276
[2026-03-19 20:26:49] 2026-03-19 19:26:49,204 [wrapper] cleanup supervisor_pilot   18244 8640
[2026-03-19 20:26:49] 2026-03-19 19:26:49,207 [wrapper] Test setup, not cleaning
[2026-03-19 20:26:49] 2026-03-19 19:26:49,209 [wrapper] apfmon messages muted
[2026-03-19 20:26:49] 2026-03-19 19:26:49,211 [wrapper] ==== wrapper stdout END ====
[2026-03-19 20:26:49] 2026-03-19 19:26:49,214 [wrapper] ==== wrapper stderr END ====
[2026-03-19 20:26:49]  *** Error codes and diagnostics ***
[2026-03-19 20:26:49]     "exeErrorCode": 0,
[2026-03-19 20:26:49]     "exeErrorDiag": "",
[2026-03-19 20:26:49]     "pilotErrorCode": 0,
[2026-03-19 20:26:49]     "pilotErrorDiag": "",
[2026-03-19 20:26:49]  *** Listing of results directory ***
[2026-03-19 20:26:49] total 616560
[2026-03-19 20:26:49] -rw-r--r-- 1 boinc boinc      5111 Mar  9 20:33 queuedata.json
[2026-03-19 20:26:49] -rw-r--r-- 1 boinc boinc    584627 Mar  9 20:33 pilot3.tar.gz
[2026-03-19 20:26:49] -rwx------ 1 boinc boinc     36322 Mar  9 20:33 runpilot2-wrapper.sh
[2026-03-19 20:26:49] -rw-r--r-- 1 boinc boinc       100 Mar 19 19:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-19 20:26:49] -rwxr-xr-x 1 boinc boinc      7986 Mar 19 19:06 run_atlas
[2026-03-19 20:26:49] -rw-r--r-- 1 boinc boinc       105 Mar 19 19:06 job.xml
[2026-03-19 20:26:49] -rw-r--r-- 2 boinc boinc 437266766 Mar 19 19:06 EVNT.46701403._001407.pool.root.1
[2026-03-19 20:26:49] -rw-r--r-- 2 boinc boinc    597951 Mar 19 19:06 input.tar.gz
[2026-03-19 20:26:49] -rw-r--r-- 2 boinc boinc     15845 Mar 19 19:06 start_atlas.sh
[2026-03-19 20:26:49] drwxrwx--x 2 boinc boinc      4096 Mar 19 19:06 shared
[2026-03-19 20:26:49] -rw-r--r-- 1 boinc boinc         0 Mar 19 19:06 boinc_setup_complete
[2026-03-19 20:26:49] -rw-r--r-- 1 boinc boinc      6440 Mar 19 19:06 init_data.xml
[2026-03-19 20:26:49] -rw-r--r-- 1 boinc boinc         0 Mar 19 19:06 boinc_lockfile
[2026-03-19 20:26:49] -rw-r--r-- 1 boinc boinc      2563 Mar 19 19:06 pandaJob.out
[2026-03-19 20:26:49] -rw------- 1 boinc boinc   1010708 Mar 19 19:06 agis_schedconf.cvmfs.json
[2026-03-19 20:26:49] -rw------- 1 boinc boinc   1511579 Mar 19 19:06 agis_ddmendpoints.agis.ALL.json
[2026-03-19 20:26:49] -rw------- 1 boinc boinc       429 Mar 19 19:06 workernode_map.json
[2026-03-19 20:26:49] drwx------ 5 boinc boinc      4096 Mar 19 19:06 pilot3
[2026-03-19 20:26:49] -rw------- 1 boinc boinc 188210826 Mar 19 20:25 HITS.48955010._020426.pool.root.1
[2026-03-19 20:26:49] -rw-r--r-- 1 boinc boinc       530 Mar 19 20:25 boinc_task_state.xml
[2026-03-19 20:26:49] -rw------- 1 boinc boinc      1028 Mar 19 20:25 memory_monitor_summary.json
[2026-03-19 20:26:49] -rw------- 1 boinc boinc    274738 Mar 19 20:25 log.48955010._020426.job.log.tgz.1
[2026-03-19 20:26:49] -rw------- 1 boinc boinc      6321 Mar 19 20:25 heartbeat.json
[2026-03-19 20:26:49] -rw------- 1 boinc boinc        95 Mar 19 20:26 pilot_heartbeat.json
[2026-03-19 20:26:49] -rw-r--r-- 1 boinc boinc      8192 Mar 19 20:26 boinc_mmap_file
[2026-03-19 20:26:49] -rw-r--r-- 1 boinc boinc        27 Mar 19 20:26 wrapper_checkpoint.txt
[2026-03-19 20:26:49] -rw------- 1 boinc boinc      4817 Mar 19 20:26 pilotlog.txt
[2026-03-19 20:26:49] -rw------- 1 boinc boinc    696769 Mar 19 20:26 log.48955010._020426.job.log.1
[2026-03-19 20:26:49] -rw------- 1 boinc boinc       357 Mar 19 20:26 output.list
[2026-03-19 20:26:49] -rw-r--r-- 1 boinc boinc       620 Mar 19 20:26 runtime_log
[2026-03-19 20:26:49] -rw------- 1 boinc boinc    993280 Mar 19 20:26 result.tar.gz
[2026-03-19 20:26:49] -rw------- 1 boinc boinc       659 Mar 19 20:26 s6CODm4WvJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmRxaLDm5vBohn.diag
[2026-03-19 20:26:49] -rw-r--r-- 1 boinc boinc      8906 Mar 19 20:26 runtime_log.err
[2026-03-19 20:26:49] -rw-r--r-- 1 boinc boinc      9939 Mar 19 20:26 stderr.txt
[2026-03-19 20:26:49] HITS file was successfully produced:
[2026-03-19 20:26:49] -rw------- 1 boinc boinc 188210826 Mar 19 20:25 shared/HITS.pool.root.1
[2026-03-19 20:26:49]  *** Contents of shared directory: ***
[2026-03-19 20:26:49] total 612400
[2026-03-19 20:26:49] -rw-r--r-- 2 boinc boinc 437266766 Mar 19 19:06 ATLAS.root_0
[2026-03-19 20:26:49] -rw-r--r-- 2 boinc boinc    597951 Mar 19 19:06 input.tar.gz
[2026-03-19 20:26:49] -rw-r--r-- 2 boinc boinc     15845 Mar 19 19:06 start_atlas.sh
[2026-03-19 20:26:49] -rw------- 1 boinc boinc 188210826 Mar 19 20:25 HITS.pool.root.1
[2026-03-19 20:26:49] -rw------- 1 boinc boinc    993280 Mar 19 20:26 result.tar.gz
20:26:50 (4580): run_atlas exited; CPU time 13331.621559
20:26:50 (4580): called boinc_finish(0)

</stderr_txt>
]]>

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