Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
2026-03-18 11:32:13 (2284): vboxwrapper version 26210
2026-03-18 11:32:13 (2284): BOINC client version: 7.20.2
2026-03-18 11:32:13 (2284): Detected: VirtualBox VboxManage Interface (Version: 6.1.34)
2026-03-18 11:32:13 (2284): Successfully copied 'init_data.xml' to the shared directory.
2026-03-18 11:32:14 (2284): Create VM. (boinc_19acbd32326e1c56, slot#0)
2026-03-18 11:32:14 (2284): Setting Memory Size for VM. (4400MB)
2026-03-18 11:32:14 (2284): Setting CPU Count for VM. (4)
2026-03-18 11:32:15 (2284): Setting Chipset Options for VM.
2026-03-18 11:32:15 (2284): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-03-18 11:32:15 (2284): Setting Boot Options for VM.
2026-03-18 11:32:16 (2284): Setting Network Configuration for NAT. (Driver: virtio)
2026-03-18 11:32:16 (2284): Enabling VM Network Access.
2026-03-18 11:32:16 (2284): Disabling USB Support for VM.
2026-03-18 11:32:17 (2284): Disabling COM Port Support for VM.
2026-03-18 11:32:17 (2284): Disabling LPT Port Support for VM.
2026-03-18 11:32:17 (2284): Disabling Audio Support for VM.
2026-03-18 11:32:17 (2284): Disabling Clipboard Support for VM.
2026-03-18 11:32:18 (2284): Disabling Drag and Drop Support for VM.
2026-03-18 11:32:18 (2284): Adding storage controller(s) to VM.
2026-03-18 11:32:18 (2284): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-03-18 11:32:19 (2284): Adding VirtualBox Guest Additions to VM.
2026-03-18 11:32:19 (2284): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-03-18 11:32:19 (2284): forwarding host port 62295 to guest port 80
2026-03-18 11:32:19 (2284): Enabling remote desktop for VM.
2026-03-18 11:32:20 (2284): Required extension pack not installed, remote desktop not enabled.
2026-03-18 11:32:20 (2284): Enabling shared directory for VM.
2026-03-18 11:32:20 (2284): Starting VM using VBoxManage interface. (boinc_19acbd32326e1c56, slot#0)
2026-03-18 11:32:26 (2284): Successfully started VM. (PID = '7076')
2026-03-18 11:32:26 (2284): Reporting VM Process ID to BOINC.
2026-03-18 11:32:26 (2284): Guest Log: BIOS: VirtualBox 6.1.34
2026-03-18 11:32:26 (2284): Guest Log: CPUID EDX: 0x178bfbff
2026-03-18 11:32:26 (2284): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-03-18 11:32:26 (2284): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-03-18 11:32:26 (2284): VM state change detected. (old = 'poweredoff', new = 'running')
2026-03-18 11:32:26 (2284): Detected: Web Application Enabled (http://localhost:62295)
2026-03-18 11:32:26 (2284): Preference change detected
2026-03-18 11:32:26 (2284): Setting CPU throttle for VM. (100%)
2026-03-18 11:32:26 (2284): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2026-03-18 11:32:28 (2284): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-03-18 11:32:28 (2284): Guest Log: BIOS: Booting from Hard Disk...
2026-03-18 11:32:31 (2284): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-03-18 11:32:31 (2284): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-03-18 11:32:31 (2284): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-03-18 11:32:39 (2284): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-03-18 11:32:39 (2284): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2026-03-18 11:32:50 (2284): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-03-18 11:32:50 (2284): Guest Log: 00:00:00.000228 main     Log opened 2026-03-18T11:32:48.908194000Z
2026-03-18 11:32:50 (2284): Guest Log: 00:00:00.000415 main     OS Product: Linux
2026-03-18 11:32:50 (2284): Guest Log: 00:00:00.000470 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-03-18 11:32:50 (2284): Guest Log: 00:00:00.000511 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-03-18 11:32:50 (2284): Guest Log: 00:00:00.000552 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-03-18 11:32:50 (2284): Guest Log: 00:00:00.000553 main     Process ID: 1286
2026-03-18 11:32:50 (2284): Guest Log: 00:00:00.000553 main     Package type: LINUX_64BITS_GENERIC
2026-03-18 11:32:50 (2284): Guest Log: 00:00:00.002278 main     5.2.32 r132073 started. Verbose level = 0
2026-03-18 11:32:51 (2284): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-03-18 11:32:51 (2284): Guest Log: [INFO] Mounting shared directory
2026-03-18 11:32:51 (2284): Guest Log: [INFO] Checking for init_data.xml
2026-03-18 11:32:55 (2284): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-03-18 11:32:55 (2284): Guest Log: [INFO] Detected branch: prod
2026-03-18 11:32:55 (2284): Guest Log: This is the prod version of the ATLAS job wrapper
2026-03-18 11:32:55 (2284): Guest Log: Copying input files
2026-03-18 11:32:57 (2284): Guest Log: Copied input files into RunAtlas.
2026-03-18 11:32:57 (2284): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-03-18 11:32:57 (2284): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-03-18 11:32:57 (2284): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-03-18 11:32:57 (2284): Guest Log: Further information can be found at the LHC@home message board.
2026-03-18 11:33:00 (2284): Guest Log: 00:00:10.006073 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 480 414 000ns (GuestNow=1 773 829 980 432 767 000 ns GuestLast=1 773 833 568 913 181 000 ns fSetTimeLastLoop=true )
2026-03-18 11:33:50 (2284): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-03-18 11:33:50 (2284): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-03-18 11:33:50 (2284): Guest Log: 2.6.3.0 1561 0 32196 157411 4 1 3117744 4096001 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2026-03-18 11:33:54 (2284): Guest Log: copied the webapp to /var/www
2026-03-18 11:33:54 (2284): Guest Log: ATHENA_PROC_NUMBER=4
2026-03-18 11:33:54 (2284): Guest Log: ATHENA_CORE_NUMBER=4
2026-03-18 11:33:54 (2284): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-03-18 11:33:54 (2284): Guest Log:  *** Starting ATLAS job. (PandaID=7056975466 taskID=49181388) ***
2026-03-18 13:13:01 (2284): Status Report: Elapsed Time: '6002.787960'
2026-03-18 13:13:01 (2284): Status Report: CPU Time: '21344.328125'
2026-03-18 14:53:37 (2284): Status Report: Elapsed Time: '12002.940855'
2026-03-18 14:53:37 (2284): Status Report: CPU Time: '45221.609375'
2026-03-18 16:34:19 (2284): Status Report: Elapsed Time: '18005.622202'
2026-03-18 16:34:19 (2284): Status Report: CPU Time: '68999.046875'
2026-03-18 18:14:59 (2284): Status Report: Elapsed Time: '24005.804054'
2026-03-18 18:14:59 (2284): Status Report: CPU Time: '92776.921875'
2026-03-18 19:55:25 (2284): Status Report: Elapsed Time: '30006.272818'
2026-03-18 19:55:25 (2284): Status Report: CPU Time: '116472.921875'
2026-03-18 20:18:47 (2284): Guest Log:  *** Job finished ***
2026-03-18 20:18:47 (2284): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-03-18 20:18:47 (2284): Guest Log: 2026-03-18 19:18:30,067 | INFO     | end of generic workflow (traces error code: 0)
2026-03-18 20:18:47 (2284): Guest Log: 2026-03-18 19:18:30,068 | INFO     | traces error code: 0
2026-03-18 20:18:47 (2284): Guest Log: 2026-03-18 19:18:30,068 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-03-18 20:18:47 (2284): Guest Log: 2026-03-18 19:18:41,122 | INFO     | PID=5979 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2026-03-18 20:18:47 (2284): Guest Log: 2026-03-18 19:18:41,123 | INFO     | found 0 job(s) in 20 queues
2026-03-18 20:18:47 (2284): Guest Log: 2026-03-18 19:18:41,123 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-03-18 20:18:47 (2284): Guest Log: 2026-03-18 19:18:41,123 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-03-18 20:18:47 (2284): Guest Log: 2026-03-18 19:18:41,123 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-03-18 20:18:47 (2284): Guest Log: 2026-03-18 19:18:41,123 | CRITICAL | thread 'MainThread' is not alive
2026-03-18 20:18:47 (2284): Guest Log: 2026-03-18 19:18:41,123 | INFO     | [monitor] control thread has ended
2026-03-18 20:18:47 (2284): Guest Log: 2026-03-18 19:18:41,262 [wrapper] ==== pilot stdout END ====
2026-03-18 20:18:47 (2284): Guest Log: 2026-03-18 19:18:41,268 [wrapper] ==== wrapper stdout RESUME ====
2026-03-18 20:18:47 (2284): Guest Log: 2026-03-18 19:18:41,274 [wrapper] pilotpid: 5979
2026-03-18 20:18:47 (2284): Guest Log: 2026-03-18 19:18:41,281 [wrapper] Pilot exit status: 0
2026-03-18 20:18:47 (2284): Guest Log: 2026-03-18 19:18:41,351 [wrapper] pandaids: 7056975466
2026-03-18 20:18:47 (2284): Guest Log: 2026-03-18 19:18:41,394 [wrapper] cleanup supervisor_pilot   916 5980
2026-03-18 20:18:47 (2284): Guest Log: 2026-03-18 19:18:41,401 [wrapper] Test setup, not cleaning
2026-03-18 20:18:47 (2284): Guest Log: 2026-03-18 19:18:41,407 [wrapper] apfmon messages muted
2026-03-18 20:18:47 (2284): Guest Log: 2026-03-18 19:18:41,414 [wrapper] ==== wrapper stdout END ====
2026-03-18 20:18:47 (2284): Guest Log: 2026-03-18 19:18:41,421 [wrapper] ==== wrapper stderr END ====
2026-03-18 20:18:47 (2284): Guest Log:  *** Error codes and diagnostics ***
2026-03-18 20:18:47 (2284): Guest Log:     "exeErrorCode": 0,
2026-03-18 20:18:47 (2284): Guest Log:     "exeErrorDiag": "",
2026-03-18 20:18:47 (2284): Guest Log:     "pilotErrorCode": 0,
2026-03-18 20:18:47 (2284): Guest Log:     "pilotErrorDiag": "",
2026-03-18 20:18:47 (2284): Guest Log:  *** Listing of results directory ***
2026-03-18 20:18:47 (2284): Guest Log: total 255144
2026-03-18 20:18:47 (2284): Guest Log: -rw-r--r--. 1 atlas atlas    585013 Mar 16 17:24 pilot3.tar.gz
2026-03-18 20:18:47 (2284): Guest Log: -rwx------. 1 atlas atlas     36322 Mar 16 17:27 runpilot2-wrapper.sh
2026-03-18 20:18:47 (2284): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Mar 16 17:30 queuedata.json
2026-03-18 20:18:47 (2284): Guest Log: -rwxr-xr-x. 1 atlas atlas      5818 Mar 18 10:32 init_data.xml
2026-03-18 20:18:47 (2284): Guest Log: -rwxr-xr-x. 1 atlas atlas    597537 Mar 18 10:32 input.tar.gz
2026-03-18 20:18:47 (2284): Guest Log: -rwxr-xr-x. 1 atlas atlas     15845 Mar 18 10:32 start_atlas.sh
2026-03-18 20:18:47 (2284): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Mar 18 10:32 EVNT.49134998._000017.pool.root.1 -> /data/./ATLAS.root_0
2026-03-18 20:18:47 (2284): Guest Log: -rw-r--r--. 1 atlas atlas      2613 Mar 18 10:33 pandaJob.out
2026-03-18 20:18:47 (2284): Guest Log: -rw-------. 1 atlas atlas   1011573 Mar 18 10:34 agis_schedconf.cvmfs.json
2026-03-18 20:18:47 (2284): Guest Log: -rw-------. 1 atlas atlas       423 Mar 18 10:34 workernode_map.json
2026-03-18 20:18:47 (2284): Guest Log: drwx------. 5 atlas atlas      4096 Mar 18 10:34 pilot3
2026-03-18 20:18:47 (2284): Guest Log: -rw-------. 1 atlas atlas 247455472 Mar 18 19:17 HITS.49181388._000409.pool.root.1
2026-03-18 20:18:47 (2284): Guest Log: -rw-------. 1 atlas atlas        95 Mar 18 19:18 pilot_heartbeat.json
2026-03-18 20:18:47 (2284): Guest Log: -rw-------. 1 atlas atlas      1025 Mar 18 19:18 memory_monitor_summary.json
2026-03-18 20:18:47 (2284): Guest Log: -rw-------. 1 atlas atlas   1511579 Mar 18 19:18 agis_ddmendpoints.agis.ALL.json
2026-03-18 20:18:47 (2284): Guest Log: -rw-------. 1 atlas atlas    633840 Mar 18 19:18 log.49181388._000409.job.log.tgz.1
2026-03-18 20:18:47 (2284): Guest Log: -rw-------. 1 atlas atlas      6351 Mar 18 19:18 heartbeat.json
2026-03-18 20:18:47 (2284): Guest Log: -rw-------. 1 atlas atlas       814 Mar 18 19:18 pilotlog.txt
2026-03-18 20:18:47 (2284): Guest Log: -rw-------. 1 atlas atlas   4341107 Mar 18 19:18 log.49181388._000409.job.log.1
2026-03-18 20:18:47 (2284): Guest Log: -rw-------. 1 atlas atlas       357 Mar 18 19:18 output.list
2026-03-18 20:18:47 (2284): Guest Log: -rw-r--r--. 1 atlas atlas       620 Mar 18 19:18 runtime_log
2026-03-18 20:18:47 (2284): Guest Log: -rw-------. 1 atlas atlas   4997120 Mar 18 19:18 result.tar.gz
2026-03-18 20:18:47 (2284): Guest Log: -rw-r--r--. 1 atlas atlas      8731 Mar 18 19:18 runtime_log.err
2026-03-18 20:18:47 (2284): Guest Log: -rw-------. 1 atlas atlas       652 Mar 18 19:18 QFqLDmKuQM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmGpyLDmKj7Dgn.diag
2026-03-18 20:18:47 (2284): Guest Log: Looking for outputfile HITS.49181388._000409.pool.root.1
2026-03-18 20:18:47 (2284): Guest Log: HITS file was successfully produced
2026-03-18 20:18:47 (2284): Guest Log: -rw-------. 1 atlas atlas 247455472 Mar 18 19:17 /home/atlas/RunAtlas/HITS.49181388._000409.pool.root.1
2026-03-18 20:18:49 (2284): Guest Log: Successfully finished the ATLAS job!
2026-03-18 20:18:49 (2284): Guest Log: Copying the results back to the shared directory!
2026-03-18 20:18:49 (2284): Guest Log:  *** Contents of shared directory: ***
2026-03-18 20:18:49 (2284): Guest Log: total 484184
2026-03-18 20:18:49 (2284): Guest Log: -rwxrwxrwx. 1 root root 242726754 Mar 18 10:32 ATLAS.root_0
2026-03-18 20:18:49 (2284): Guest Log: -rwxrwxrwx. 1 root root 247455472 Mar 18 19:18 HITS.pool.root.1
2026-03-18 20:18:49 (2284): Guest Log: -rwxrwxrwx. 1 root root      5818 Mar 18 10:32 init_data.xml
2026-03-18 20:18:49 (2284): Guest Log: -rwxrwxrwx. 1 root root    597537 Mar 18 03:45 input.tar.gz
2026-03-18 20:18:49 (2284): Guest Log: -rwxrwxrwx. 1 root root   4997120 Mar 18 19:18 result.tar.gz
2026-03-18 20:18:49 (2284): Guest Log: -rwxrwxrwx. 1 root root     15845 Mar 18 03:45 start_atlas.sh
2026-03-18 20:18:49 (2284): Guest Log:  *** Success! Shutting down the machine. ***
2026-03-18 20:18:49 (2284): VM Completion File Detected.
2026-03-18 20:18:49 (2284): Powering off VM.
2026-03-18 20:18:51 (2284): Successfully stopped VM.
2026-03-18 20:18:51 (2284): Deregistering VM. (boinc_19acbd32326e1c56, slot#0)
2026-03-18 20:18:51 (2284): Removing network bandwidth throttle group from VM.
2026-03-18 20:18:51 (2284): Removing VM from VirtualBox.
2026-03-18 20:18:56 (2284): called boinc_finish(0)

</stderr_txt>
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