Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:41:18 (1045250): wrapper (7.7.26015): starting
23:41:18 (1045250): wrapper: running run_atlas (--nthreads 4)
[2026-03-18 23:41:18] Arguments: --nthreads 4
[2026-03-18 23:41:18] Threads: 4
[2026-03-18 23:41:18] Checking for CVMFS
[2026-03-18 23:41:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-18 23:41:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-18 23:41:19] Running cvmfs_config stat atlas.cern.ch
[2026-03-18 23:41:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-18 23:41:19] 2.9.2.0 711313 3437 91716 157432 1 49 28700717 36864000 0 130560 0 1023109 99.976 115679 13296 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-18 23:41:19] CVMFS is ok
[2026-03-18 23:41:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-18 23:41:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-18 23:41:19] Further information can be found at the LHC@home message board.
[2026-03-18 23:41:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-18 23:41:19] Checking for apptainer binary...
[2026-03-18 23:41:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-18 23:41:19] Running /usr/bin/apptainer --version
[2026-03-18 23:41:19] apptainer version 1.4.1-1.1
[2026-03-18 23:41:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-18 23:41:19] thA381
[2026-03-18 23:41:19] apptainer works
[2026-03-18 23:41:19] Set ATHENA_PROC_NUMBER=4
[2026-03-18 23:41:19] Set ATHENA_CORE_NUMBER=4
[2026-03-18 23:41:19] Starting ATLAS job with PandaID=7057534191
[2026-03-18 23:41:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-19 02:18:48]  *** The last 200 lines of the pilot log: ***
[2026-03-19 02:18:48] 2026-03-19 01:17:48,520 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-19 02:18:48] 2026-03-19 01:17:48,520 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-19 02:18:48] 2026-03-19 01:17:48,520 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-19 02:18:48] 2026-03-19 01:17:48,520 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-19 02:18:48] 2026-03-19 01:17:48,520 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-19 02:18:48] 2026-03-19 01:17:48,520 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-19 02:18:48] 2026-03-19 01:17:48,521 | INFO     | job 7057534191 has completed (purged errors)
[2026-03-19 02:18:48] 2026-03-19 01:17:48,521 | INFO     | overall cleanup function is called
[2026-03-19 02:18:48] 2026-03-19 01:17:49,527 | INFO     | --- collectZombieJob: --- 10, [1053876]
[2026-03-19 02:18:48] 2026-03-19 01:17:49,528 | INFO     | zombie collector waiting for pid 1053876
[2026-03-19 02:18:48] 2026-03-19 01:17:49,528 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-19 02:18:48] 2026-03-19 01:17:49,528 | INFO     | collected zombie processes
[2026-03-19 02:18:48] 2026-03-19 01:17:49,528 | INFO     | will attempt to kill all subprocesses of pid=1053876
[2026-03-19 02:18:48] 2026-03-19 01:17:49,570 | INFO     | process IDs to be killed: [1053876] (in reverse order)
[2026-03-19 02:18:48] 2026-03-19 01:17:49,604 | WARNING  | found no corresponding commands to process id(s)
[2026-03-19 02:18:48] 2026-03-19 01:17:49,604 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-19 02:18:48] 2026-03-19 01:17:49,606 | INFO     | did not find any defunct processes belonging to 1053876
[2026-03-19 02:18:48] 2026-03-19 01:17:49,607 | INFO     | did not find any defunct processes belonging to 1053876
[2026-03-19 02:18:48] 2026-03-19 01:17:49,607 | INFO     | ready for new job
[2026-03-19 02:18:48] 2026-03-19 01:17:49,607 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-19 02:18:48] 2026-03-19 01:17:49,608 | INFO     | **************************************
[2026-03-19 02:18:48] 2026-03-19 01:17:49,608 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-19 02:18:48] 2026-03-19 01:17:49,608 | INFO     | **************************************
[2026-03-19 02:18:48] 2026-03-19 01:17:49,608 | INFO     | 
[2026-03-19 02:18:48] 2026-03-19 01:17:49,608 | INFO     | architecture information:
[2026-03-19 02:18:48] 2026-03-19 01:17:49,609 | INFO     | executing command: cat /etc/os-release
[2026-03-19 02:18:48] 2026-03-19 01:17:49,624 | INFO     | cat /etc/os-release:
[2026-03-19 02:18:48] NAME="CentOS Linux"
[2026-03-19 02:18:48] VERSION="7 (Core)"
[2026-03-19 02:18:48] ID="centos"
[2026-03-19 02:18:48] ID_LIKE="rhel fedora"
[2026-03-19 02:18:48] VERSION_ID="7"
[2026-03-19 02:18:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-19 02:18:48] ANSI_COLOR="0;31"
[2026-03-19 02:18:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-19 02:18:48] HOME_URL="https://www.centos.org/"
[2026-03-19 02:18:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-19 02:18:48] 
[2026-03-19 02:18:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-19 02:18:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-19 02:18:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-19 02:18:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-19 02:18:48] 
[2026-03-19 02:18:48] 2026-03-19 01:17:49,624 | INFO     | **************************************
[2026-03-19 02:18:48] 2026-03-19 01:17:50,127 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-19 02:18:48] 2026-03-19 01:17:50,146 | INFO     | sufficient remaining disk space (230115246080 B)
[2026-03-19 02:18:48] 2026-03-19 01:17:50,146 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-19 02:18:48] 2026-03-19 01:17:50,146 | INFO     | current server update state: UPDATING_FINAL
[2026-03-19 02:18:48] 2026-03-19 01:17:50,146 | INFO     | update_server=False
[2026-03-19 02:18:48] 2026-03-19 01:17:50,146 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-19 02:18:48] 2026-03-19 01:17:50,146 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-19 02:18:48] 2026-03-19 01:17:50,159 | INFO     | all data control threads have been joined
[2026-03-19 02:18:48] 2026-03-19 01:17:50,329 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-19 02:18:48] 2026-03-19 01:17:50,329 | INFO     | aborting loop
[2026-03-19 02:18:48] 2026-03-19 01:17:50,529 | INFO     | job.realtimelogging is not enabled
[2026-03-19 02:18:48] 2026-03-19 01:17:50,965 | INFO     | all job control threads have been joined
[2026-03-19 02:18:48] 2026-03-19 01:17:51,152 | INFO     | [job] queue monitor thread has finished
[2026-03-19 02:18:48] 2026-03-19 01:17:51,152 | INFO     | [job] retrieve thread has finished
[2026-03-19 02:18:48] 2026-03-19 01:17:51,165 | INFO     | [data] control thread has finished
[2026-03-19 02:18:48] 2026-03-19 01:17:51,267 | INFO     | [job] create_data_payload thread has finished
[2026-03-19 02:18:48] 2026-03-19 01:17:51,335 | INFO     | [job] job monitor thread has finished
[2026-03-19 02:18:48] 2026-03-19 01:17:51,349 | INFO     | [payload] validate_pre thread has finished
[2026-03-19 02:18:48] 2026-03-19 01:17:51,414 | INFO     | all payload control threads have been joined
[2026-03-19 02:18:48] 2026-03-19 01:17:51,478 | INFO     | [payload] validate_post thread has finished
[2026-03-19 02:18:48] 2026-03-19 01:17:51,509 | INFO     | [data] copytool_in thread has finished
[2026-03-19 02:18:48] 2026-03-19 01:17:51,535 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-19 02:18:48] 2026-03-19 01:17:51,594 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-19 02:18:48] 2026-03-19 01:17:51,971 | INFO     | [job] control thread has finished
[2026-03-19 02:18:48] 2026-03-19 01:17:52,082 | INFO     | [payload] execute_payloads thread has finished
[2026-03-19 02:18:48] 2026-03-19 01:17:52,242 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-19 02:18:48] 2026-03-19 01:17:52,420 | INFO     | [payload] control thread has finished
[2026-03-19 02:18:48] 2026-03-19 01:17:52,544 | INFO     | [payload] failed_post thread has finished
[2026-03-19 02:18:48] 2026-03-19 01:17:52,636 | INFO     | [job] validate thread has finished
[2026-03-19 02:18:48] 2026-03-19 01:17:53,596 | INFO     | [data] copytool_out thread has finished
[2026-03-19 02:18:48] 2026-03-19 01:17:56,249 | INFO     | [data] queue_monitor thread has finished
[2026-03-19 02:18:48] 2026-03-19 01:18:20,009 | INFO     | PID=1049361 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-19 02:18:48] 2026-03-19 01:18:20,009 | INFO     | found 0 job(s) in 20 queues
[2026-03-19 02:18:48] 2026-03-19 01:18:20,009 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-19 02:18:48] 2026-03-19 01:18:20,010 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-19 02:18:48] 2026-03-19 01:18:42,921 | INFO     | [monitor] cgroup control has ended
[2026-03-19 02:18:48] 2026-03-19 01:18:43,077 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140075606013760)>', '<ExcThread(monitor, started 140074947684096)>']
[2026-03-19 02:18:48] 2026-03-19 01:18:43,129 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-19 02:18:48] 2026-03-19 01:18:43,129 | INFO     | [monitor] control thread has ended
[2026-03-19 02:18:48] 2026-03-19 01:18:48,103 | INFO     | all workflow threads have been joined
[2026-03-19 02:18:48] 2026-03-19 01:18:48,103 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-19 02:18:48] 2026-03-19 01:18:48,104 | INFO     | traces error code: 0
[2026-03-19 02:18:48] 2026-03-19 01:18:48,104 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-19 02:18:48] 2026-03-19 01:18:48,183 [wrapper] ==== pilot stdout END ====
[2026-03-19 02:18:48] 2026-03-19 01:18:48,188 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-19 02:18:48] 2026-03-19 01:18:48,192 [wrapper] pilotpid: 1049361
[2026-03-19 02:18:48] 2026-03-19 01:18:48,196 [wrapper] Pilot exit status: 0
[2026-03-19 02:18:48] 2026-03-19 01:18:48,208 [wrapper] pandaids: 7057534191
[2026-03-19 02:18:48] 2026-03-19 01:18:48,231 [wrapper] cleanup supervisor_pilot 1060195 1049362
[2026-03-19 02:18:48] 2026-03-19 01:18:48,235 [wrapper] Test setup, not cleaning
[2026-03-19 02:18:48] 2026-03-19 01:18:48,239 [wrapper] apfmon messages muted
[2026-03-19 02:18:48] 2026-03-19 01:18:48,243 [wrapper] ==== wrapper stdout END ====
[2026-03-19 02:18:48] 2026-03-19 01:18:48,246 [wrapper] ==== wrapper stderr END ====
[2026-03-19 02:18:48]  *** Error codes and diagnostics ***
[2026-03-19 02:18:48]     "exeErrorCode": 0,
[2026-03-19 02:18:48]     "exeErrorDiag": "",
[2026-03-19 02:18:48]     "pilotErrorCode": 0,
[2026-03-19 02:18:48]     "pilotErrorDiag": "",
[2026-03-19 02:18:48]  *** Listing of results directory ***
[2026-03-19 02:18:48] total 472520
[2026-03-19 02:18:48] -rw-r--r-- 1 boinc boinc    585013 Mar 17 19:29 pilot3.tar.gz
[2026-03-19 02:18:48] -rw-r--r-- 1 boinc boinc      5111 Mar 17 19:30 queuedata.json
[2026-03-19 02:18:48] -rwx------ 1 boinc boinc     36322 Mar 17 19:31 runpilot2-wrapper.sh
[2026-03-19 02:18:48] -rw-r--r-- 1 boinc boinc       100 Mar 18 23:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-19 02:18:48] -rwxr-xr-x 1 boinc boinc      7986 Mar 18 23:41 run_atlas
[2026-03-19 02:18:48] -rw-r--r-- 1 boinc boinc       105 Mar 18 23:41 job.xml
[2026-03-19 02:18:48] -rw-r--r-- 2 boinc boinc 243928079 Mar 18 23:41 EVNT.49134174._000017.pool.root.1
[2026-03-19 02:18:48] -rw-r--r-- 2 boinc boinc    597540 Mar 18 23:41 input.tar.gz
[2026-03-19 02:18:48] -rw-r--r-- 2 boinc boinc     15845 Mar 18 23:41 start_atlas.sh
[2026-03-19 02:18:48] drwxrwx--x 2 boinc boinc      4096 Mar 18 23:41 shared
[2026-03-19 02:18:48] -rw-r--r-- 1 boinc boinc         0 Mar 18 23:41 boinc_setup_complete
[2026-03-19 02:18:48] -rw-r--r-- 1 boinc boinc      6376 Mar 18 23:41 init_data.xml
[2026-03-19 02:18:48] -rw-r--r-- 1 boinc boinc         0 Mar 18 23:41 boinc_lockfile
[2026-03-19 02:18:48] -rw-r--r-- 1 boinc boinc      2596 Mar 18 23:41 pandaJob.out
[2026-03-19 02:18:48] -rw------- 1 boinc boinc   1010342 Mar 18 23:41 agis_schedconf.cvmfs.json
[2026-03-19 02:18:48] -rw------- 1 boinc boinc   1511579 Mar 18 23:41 agis_ddmendpoints.agis.ALL.json
[2026-03-19 02:18:48] -rw------- 1 boinc boinc       420 Mar 18 23:41 workernode_map.json
[2026-03-19 02:18:48] drwx------ 5 boinc boinc      4096 Mar 18 23:41 pilot3
[2026-03-19 02:18:48] -rw------- 1 boinc boinc 232662252 Mar 19 02:17 HITS.49176497._000421.pool.root.1
[2026-03-19 02:18:48] -rw-r--r-- 1 boinc boinc       529 Mar 19 02:17 boinc_task_state.xml
[2026-03-19 02:18:48] -rw------- 1 boinc boinc      1019 Mar 19 02:17 memory_monitor_summary.json
[2026-03-19 02:18:48] -rw------- 1 boinc boinc    340548 Mar 19 02:17 log.49176497._000421.job.log.tgz.1
[2026-03-19 02:18:48] -rw------- 1 boinc boinc      6295 Mar 19 02:17 heartbeat.json
[2026-03-19 02:18:48] -rw------- 1 boinc boinc        95 Mar 19 02:18 pilot_heartbeat.json
[2026-03-19 02:18:48] -rw-r--r-- 1 boinc boinc      8192 Mar 19 02:18 boinc_mmap_file
[2026-03-19 02:18:48] -rw-r--r-- 1 boinc boinc        27 Mar 19 02:18 wrapper_checkpoint.txt
[2026-03-19 02:18:48] -rw------- 1 boinc boinc      4820 Mar 19 02:18 pilotlog.txt
[2026-03-19 02:18:48] -rw------- 1 boinc boinc   1334615 Mar 19 02:18 log.49176497._000421.job.log.1
[2026-03-19 02:18:48] -rw------- 1 boinc boinc       357 Mar 19 02:18 output.list
[2026-03-19 02:18:48] -rw-r--r-- 1 boinc boinc       620 Mar 19 02:18 runtime_log
[2026-03-19 02:18:48] -rw------- 1 boinc boinc   1689600 Mar 19 02:18 result.tar.gz
[2026-03-19 02:18:48] -rw-r--r-- 1 boinc boinc      8896 Mar 19 02:18 runtime_log.err
[2026-03-19 02:18:48] -rw------- 1 boinc boinc       658 Mar 19 02:18 Mu2MDmJNoM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmJk0LDmI459Vm.diag
[2026-03-19 02:18:48] -rw-r--r-- 1 boinc boinc     11508 Mar 19 02:18 stderr.txt
[2026-03-19 02:18:48] HITS file was successfully produced:
[2026-03-19 02:18:48] -rw------- 1 boinc boinc 232662252 Mar 19 02:17 shared/HITS.pool.root.1
[2026-03-19 02:18:48]  *** Contents of shared directory: ***
[2026-03-19 02:18:48] total 467676
[2026-03-19 02:18:48] -rw-r--r-- 2 boinc boinc 243928079 Mar 18 23:41 ATLAS.root_0
[2026-03-19 02:18:48] -rw-r--r-- 2 boinc boinc    597540 Mar 18 23:41 input.tar.gz
[2026-03-19 02:18:48] -rw-r--r-- 2 boinc boinc     15845 Mar 18 23:41 start_atlas.sh
[2026-03-19 02:18:48] -rw------- 1 boinc boinc 232662252 Mar 19 02:17 HITS.pool.root.1
[2026-03-19 02:18:48] -rw------- 1 boinc boinc   1689600 Mar 19 02:18 result.tar.gz
02:18:49 (1045250): run_atlas exited; CPU time 35705.311997
02:18:49 (1045250): called boinc_finish(0)

</stderr_txt>
]]>

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