Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:20:23 (2894092): wrapper (7.7.26015): starting
08:20:23 (2894092): wrapper: running run_atlas (--nthreads 2)
[2026-03-19 08:20:23] Arguments: --nthreads 2
[2026-03-19 08:20:23] Threads: 2
[2026-03-19 08:20:23] Checking for CVMFS
[2026-03-19 08:20:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-19 08:20:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-19 08:20:24] Running cvmfs_config stat atlas.cern.ch
[2026-03-19 08:20:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-19 08:20:24] 2.9.2.0 2667927 3980 56912 157446 3 49 31342165 36864000 0 130560 0 679293 99.963 137962 11921 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-19 08:20:24] CVMFS is ok
[2026-03-19 08:20:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-19 08:20:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-19 08:20:24] Further information can be found at the LHC@home message board.
[2026-03-19 08:20:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-19 08:20:24] Checking for apptainer binary...
[2026-03-19 08:20:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-19 08:20:24] Running /usr/bin/apptainer --version
[2026-03-19 08:20:24] apptainer version 1.4.1-1.1
[2026-03-19 08:20:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-19 08:20:24] thA389
[2026-03-19 08:20:24] apptainer works
[2026-03-19 08:20:24] Set ATHENA_PROC_NUMBER=2
[2026-03-19 08:20:24] Set ATHENA_CORE_NUMBER=2
[2026-03-19 08:20:24] Starting ATLAS job with PandaID=7057893261
[2026-03-19 08:20:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-19 11:56:34]  *** The last 200 lines of the pilot log: ***
[2026-03-19 11:56:34] 2026-03-19 10:55:53,568 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-19 11:56:34] 2026-03-19 10:55:53,568 | INFO     | job 7057893261 has completed (purged errors)
[2026-03-19 11:56:34] 2026-03-19 10:55:53,568 | INFO     | overall cleanup function is called
[2026-03-19 11:56:34] 2026-03-19 10:55:54,577 | INFO     | --- collectZombieJob: --- 10, [2902533]
[2026-03-19 11:56:34] 2026-03-19 10:55:54,577 | INFO     | zombie collector waiting for pid 2902533
[2026-03-19 11:56:34] 2026-03-19 10:55:54,578 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-19 11:56:34] 2026-03-19 10:55:54,578 | INFO     | collected zombie processes
[2026-03-19 11:56:34] 2026-03-19 10:55:54,578 | INFO     | will attempt to kill all subprocesses of pid=2902533
[2026-03-19 11:56:34] 2026-03-19 10:55:54,606 | INFO     | process IDs to be killed: [2902533] (in reverse order)
[2026-03-19 11:56:34] 2026-03-19 10:55:54,627 | WARNING  | found no corresponding commands to process id(s)
[2026-03-19 11:56:34] 2026-03-19 10:55:54,627 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-19 11:56:34] 2026-03-19 10:55:54,628 | INFO     | did not find any defunct processes belonging to 2902533
[2026-03-19 11:56:34] 2026-03-19 10:55:54,628 | INFO     | did not find any defunct processes belonging to 2902533
[2026-03-19 11:56:34] 2026-03-19 10:55:54,628 | INFO     | ready for new job
[2026-03-19 11:56:34] 2026-03-19 10:55:54,628 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-19 11:56:34] 2026-03-19 10:55:54,629 | INFO     | **************************************
[2026-03-19 11:56:34] 2026-03-19 10:55:54,629 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-19 11:56:34] 2026-03-19 10:55:54,629 | INFO     | **************************************
[2026-03-19 11:56:34] 2026-03-19 10:55:54,629 | INFO     | 
[2026-03-19 11:56:34] 2026-03-19 10:55:54,629 | INFO     | architecture information:
[2026-03-19 11:56:34] 2026-03-19 10:55:54,629 | INFO     | executing command: cat /etc/os-release
[2026-03-19 11:56:34] 2026-03-19 10:55:54,638 | INFO     | cat /etc/os-release:
[2026-03-19 11:56:34] NAME="CentOS Linux"
[2026-03-19 11:56:34] VERSION="7 (Core)"
[2026-03-19 11:56:34] ID="centos"
[2026-03-19 11:56:34] ID_LIKE="rhel fedora"
[2026-03-19 11:56:34] VERSION_ID="7"
[2026-03-19 11:56:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-19 11:56:34] ANSI_COLOR="0;31"
[2026-03-19 11:56:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-19 11:56:34] HOME_URL="https://www.centos.org/"
[2026-03-19 11:56:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-19 11:56:34] 
[2026-03-19 11:56:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-19 11:56:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-19 11:56:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-19 11:56:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-19 11:56:34] 
[2026-03-19 11:56:34] 2026-03-19 10:55:54,639 | INFO     | **************************************
[2026-03-19 11:56:34] 2026-03-19 10:55:55,142 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-19 11:56:34] 2026-03-19 10:55:55,154 | INFO     | sufficient remaining disk space (831006965760 B)
[2026-03-19 11:56:34] 2026-03-19 10:55:55,154 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-19 11:56:34] 2026-03-19 10:55:55,154 | INFO     | current server update state: UPDATING_FINAL
[2026-03-19 11:56:34] 2026-03-19 10:55:55,154 | INFO     | update_server=False
[2026-03-19 11:56:34] 2026-03-19 10:55:55,154 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-19 11:56:34] 2026-03-19 10:55:55,154 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-19 11:56:34] 2026-03-19 10:55:55,154 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-19 11:56:34] 2026-03-19 10:55:55,154 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-19 11:56:34] 2026-03-19 10:55:55,154 | INFO     | found 0 job(s) in 20 queues
[2026-03-19 11:56:34] 2026-03-19 10:55:55,155 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-19 11:56:34] 2026-03-19 10:55:55,155 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-19 11:56:34] 2026-03-19 10:55:55,158 | INFO     | all payload control threads have been joined
[2026-03-19 11:56:34] 2026-03-19 10:55:55,383 | INFO     | all data control threads have been joined
[2026-03-19 11:56:34] 2026-03-19 10:55:55,967 | INFO     | all job control threads have been joined
[2026-03-19 11:56:34] 2026-03-19 10:55:56,160 | INFO     | [job] queue monitor thread has finished
[2026-03-19 11:56:34] 2026-03-19 10:55:56,161 | INFO     | [job] retrieve thread has finished
[2026-03-19 11:56:34] 2026-03-19 10:55:56,163 | INFO     | [payload] control thread has finished
[2026-03-19 11:56:34] 2026-03-19 10:55:56,179 | INFO     | [job] validate thread has finished
[2026-03-19 11:56:34] 2026-03-19 10:55:56,227 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-19 11:56:34] 2026-03-19 10:55:56,236 | INFO     | [payload] validate_pre thread has finished
[2026-03-19 11:56:34] 2026-03-19 10:55:56,281 | INFO     | [job] create_data_payload thread has finished
[2026-03-19 11:56:34] 2026-03-19 10:55:56,389 | INFO     | [data] control thread has finished
[2026-03-19 11:56:34] 2026-03-19 10:55:56,514 | INFO     | [payload] execute_payloads thread has finished
[2026-03-19 11:56:34] 2026-03-19 10:55:56,656 | INFO     | [data] copytool_in thread has finished
[2026-03-19 11:56:34] 2026-03-19 10:55:56,754 | INFO     | [payload] validate_post thread has finished
[2026-03-19 11:56:34] 2026-03-19 10:55:56,973 | INFO     | [job] control thread has finished
[2026-03-19 11:56:34] 2026-03-19 10:55:57,496 | INFO     | [payload] failed_post thread has finished
[2026-03-19 11:56:34] 2026-03-19 10:55:58,123 | INFO     | job.realtimelogging is not enabled
[2026-03-19 11:56:34] 2026-03-19 10:55:58,233 | INFO     | [data] copytool_out thread has finished
[2026-03-19 11:56:34] 2026-03-19 10:55:58,599 | WARNING  | process 2902533 can no longer be monitored (due to stat problems) - aborting
[2026-03-19 11:56:34] 2026-03-19 10:55:58,620 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-19 11:56:34] 2026-03-19 10:55:58,644 | INFO     | number of running child processes to parent process 2902533: 1
[2026-03-19 11:56:34] 2026-03-19 10:55:58,644 | INFO     | maximum number of monitored processes: 6
[2026-03-19 11:56:34] 2026-03-19 10:55:58,645 | INFO     | aborting job monitoring since job object (job id=7057893261) has expired
[2026-03-19 11:56:34] 2026-03-19 10:55:58,645 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-19 11:56:34] 2026-03-19 10:55:58,645 | INFO     | will abort loop
[2026-03-19 11:56:34] 2026-03-19 10:55:59,124 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-19 11:56:34] 2026-03-19 10:55:59,161 | INFO     | [data] queue_monitor thread has finished
[2026-03-19 11:56:34] 2026-03-19 10:55:59,650 | INFO     | [job] job monitor thread has finished
[2026-03-19 11:56:34] 2026-03-19 10:56:03,595 | INFO     | [monitor] cgroup control has ended
[2026-03-19 11:56:34] 2026-03-19 10:56:04,970 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140234966832960)>', '<ExcThread(monitor, started 140234473846528)>']
[2026-03-19 11:56:34] 2026-03-19 10:56:05,203 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-19 11:56:34] 2026-03-19 10:56:05,203 | INFO     | [monitor] control thread has ended
[2026-03-19 11:56:34] 2026-03-19 10:56:09,996 | INFO     | all workflow threads have been joined
[2026-03-19 11:56:34] 2026-03-19 10:56:09,997 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-19 11:56:34] 2026-03-19 10:56:09,998 | INFO     | traces error code: 0
[2026-03-19 11:56:34] 2026-03-19 10:56:09,998 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-19 11:56:34] 2026-03-19 10:56:10,038 [wrapper] ==== pilot stdout END ====
[2026-03-19 11:56:34] 2026-03-19 10:56:10,041 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-19 11:56:34] 2026-03-19 10:56:10,044 [wrapper] pilotpid: 2898119
[2026-03-19 11:56:34] 2026-03-19 10:56:10,046 [wrapper] Pilot exit status: 0
[2026-03-19 11:56:34] 2026-03-19 10:56:10,052 [wrapper] pandaids: 7057893261
[2026-03-19 11:56:34] 2026-03-19 10:56:10,064 [wrapper] cleanup supervisor_pilot 2908961 2898120
[2026-03-19 11:56:34] 2026-03-19 10:56:10,065 [wrapper] Test setup, not cleaning
[2026-03-19 11:56:34] 2026-03-19 10:56:10,068 [wrapper] apfmon messages muted
[2026-03-19 11:56:34] 2026-03-19 10:56:10,070 [wrapper] ==== wrapper stdout END ====
[2026-03-19 11:56:34] 2026-03-19 10:56:10,071 [wrapper] ==== wrapper stderr END ====
[2026-03-19 11:56:34]  *** Error codes and diagnostics ***
[2026-03-19 11:56:34]     "exeErrorCode": 0,
[2026-03-19 11:56:34]     "exeErrorDiag": "",
[2026-03-19 11:56:34]     "pilotErrorCode": 0,
[2026-03-19 11:56:34]     "pilotErrorDiag": "",
[2026-03-19 11:56:34]  *** Listing of results directory ***
[2026-03-19 11:56:34] total 468564
[2026-03-19 11:56:34] -rw-r--r-- 1 boinc boinc    585013 Mar 18 02:12 pilot3.tar.gz
[2026-03-19 11:56:34] -rwx------ 1 boinc boinc     36322 Mar 18 02:13 runpilot2-wrapper.sh
[2026-03-19 11:56:34] -rw-r--r-- 1 boinc boinc      5111 Mar 18 02:14 queuedata.json
[2026-03-19 11:56:34] -rw-r--r-- 1 boinc boinc       100 Mar 19 08:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-19 11:56:34] -rwxr-xr-x 1 boinc boinc      7986 Mar 19 08:20 run_atlas
[2026-03-19 11:56:34] -rw-r--r-- 1 boinc boinc       105 Mar 19 08:20 job.xml
[2026-03-19 11:56:34] -rw-r--r-- 2 boinc boinc 252757689 Mar 19 08:20 EVNT.49129468._000001.pool.root.1
[2026-03-19 11:56:34] -rw-r--r-- 2 boinc boinc    597528 Mar 19 08:20 input.tar.gz
[2026-03-19 11:56:34] -rw-r--r-- 2 boinc boinc     15845 Mar 19 08:20 start_atlas.sh
[2026-03-19 11:56:34] drwxrwx--x 2 boinc boinc      4096 Mar 19 08:20 shared
[2026-03-19 11:56:34] -rw-r--r-- 1 boinc boinc         0 Mar 19 08:20 boinc_setup_complete
[2026-03-19 11:56:34] -rw-r--r-- 1 boinc boinc      6205 Mar 19 08:20 init_data.xml
[2026-03-19 11:56:34] -rw-r--r-- 1 boinc boinc         0 Mar 19 08:20 boinc_lockfile
[2026-03-19 11:56:34] -rw-r--r-- 1 boinc boinc      2591 Mar 19 08:20 pandaJob.out
[2026-03-19 11:56:34] -rw------- 1 boinc boinc   1010808 Mar 19 08:20 agis_schedconf.cvmfs.json
[2026-03-19 11:56:34] -rw------- 1 boinc boinc       419 Mar 19 08:20 workernode_map.json
[2026-03-19 11:56:34] drwx------ 5 boinc boinc      4096 Mar 19 08:20 pilot3
[2026-03-19 11:56:34] -rw------- 1 boinc boinc 218760826 Mar 19 11:55 HITS.49191964._000021.pool.root.1
[2026-03-19 11:56:34] -rw-r--r-- 1 boinc boinc       530 Mar 19 11:55 boinc_task_state.xml
[2026-03-19 11:56:34] -rw------- 1 boinc boinc        95 Mar 19 11:55 pilot_heartbeat.json
[2026-03-19 11:56:34] -rw------- 1 boinc boinc      1013 Mar 19 11:55 memory_monitor_summary.json
[2026-03-19 11:56:34] -rw------- 1 boinc boinc   1511579 Mar 19 11:55 agis_ddmendpoints.agis.ALL.json
[2026-03-19 11:56:34] -rw------- 1 boinc boinc    360183 Mar 19 11:55 log.49191964._000021.job.log.tgz.1
[2026-03-19 11:56:34] -rw------- 1 boinc boinc      6289 Mar 19 11:55 heartbeat.json
[2026-03-19 11:56:34] -rw------- 1 boinc boinc      5148 Mar 19 11:56 pilotlog.txt
[2026-03-19 11:56:34] -rw------- 1 boinc boinc   1826075 Mar 19 11:56 log.49191964._000021.job.log.1
[2026-03-19 11:56:34] -rw------- 1 boinc boinc       357 Mar 19 11:56 output.list
[2026-03-19 11:56:34] -rw-r--r-- 1 boinc boinc       620 Mar 19 11:56 runtime_log
[2026-03-19 11:56:34] -rw------- 1 boinc boinc   2201600 Mar 19 11:56 result.tar.gz
[2026-03-19 11:56:34] -rw-r--r-- 1 boinc boinc      8897 Mar 19 11:56 runtime_log.err
[2026-03-19 11:56:34] -rw------- 1 boinc boinc       660 Mar 19 11:56 b6nMDmZeuM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmkI1LDmUlf0qn.diag
[2026-03-19 11:56:34] -rw-r--r-- 1 boinc boinc      8192 Mar 19 11:56 boinc_mmap_file
[2026-03-19 11:56:34] -rw-r--r-- 1 boinc boinc        28 Mar 19 11:56 wrapper_checkpoint.txt
[2026-03-19 11:56:34] -rw-r--r-- 1 boinc boinc     11554 Mar 19 11:56 stderr.txt
[2026-03-19 11:56:34] HITS file was successfully produced:
[2026-03-19 11:56:34] -rw------- 1 boinc boinc 218760826 Mar 19 11:55 shared/HITS.pool.root.1
[2026-03-19 11:56:34]  *** Contents of shared directory: ***
[2026-03-19 11:56:34] total 463224
[2026-03-19 11:56:34] -rw-r--r-- 2 boinc boinc 252757689 Mar 19 08:20 ATLAS.root_0
[2026-03-19 11:56:34] -rw-r--r-- 2 boinc boinc    597528 Mar 19 08:20 input.tar.gz
[2026-03-19 11:56:34] -rw-r--r-- 2 boinc boinc     15845 Mar 19 08:20 start_atlas.sh
[2026-03-19 11:56:34] -rw------- 1 boinc boinc 218760826 Mar 19 11:55 HITS.pool.root.1
[2026-03-19 11:56:34] -rw------- 1 boinc boinc   2201600 Mar 19 11:56 result.tar.gz
11:56:36 (2894092): run_atlas exited; CPU time 25112.268757
11:56:36 (2894092): called boinc_finish(0)

</stderr_txt>
]]>

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