Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:13:07 (3331314): wrapper (7.7.26015): starting
05:13:07 (3331314): wrapper: running run_atlas (--nthreads 12)
[2026-03-20 05:13:07] Arguments: --nthreads 12
[2026-03-20 05:13:07] Threads: 12
[2026-03-20 05:13:07] Checking for CVMFS
[2026-03-20 05:13:07] No cvmfs_config command found, will try listing directly
[2026-03-20 05:13:07] CVMFS is ok
[2026-03-20 05:13:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-20 05:13:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-20 05:13:07] Further information can be found at the LHC@home message board.
[2026-03-20 05:13:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-20 05:13:07] Checking for apptainer binary...
[2026-03-20 05:13:07] which: no apptainer in ((null))
[2026-03-20 05:13:07] apptainer is not installed, using version from CVMFS
[2026-03-20 05:13:07] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-20 05:13:07] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot216/slots/2/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut18.grid.cesnet.cz
[2026-03-20 05:13:07] apptainer works
[2026-03-20 05:13:07] Set ATHENA_PROC_NUMBER=12
[2026-03-20 05:13:07] Set ATHENA_CORE_NUMBER=12
[2026-03-20 05:13:07] Starting ATLAS job with PandaID=7057888361
[2026-03-20 05:13:07] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot216/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-20 06:03:30]  *** The last 200 lines of the pilot log: ***
[2026-03-20 06:03:30]  scope=mc23_13p6TeV
[2026-03-20 06:03:30]  status=None
[2026-03-20 06:03:30]  status_code=0
[2026-03-20 06:03:30]  storage_token=
[2026-03-20 06:03:30]  surl=/var/lib/boinc/var/slot216/slots/2/PanDA_Pilot-7057888361/log.49178662._000118.job.log.tgz.1
[2026-03-20 06:03:30]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d3/10/log.49178662._000118.job.log.tgz.1
[2026-03-20 06:03:30]  workdir=None
[2026-03-20 06:03:30] ]
[2026-03-20 06:03:30] 2026-03-20 05:02:30,427 | INFO     | transferring file log.49178662._000118.job.log.tgz.1 from /var/lib/boinc/var/slot216/slots/2/PanDA_Pilot-7057888361/log.49178662._000118.job.log.tgz.1 to /var/lib/
[2026-03-20 06:03:30] 2026-03-20 05:02:30,427 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot216/slots/2/PanDA_Pilot-7057888361/log.49178662._000118.job.log.tgz.1 /var/lib/boinc/var/slot216/slots/2/
[2026-03-20 06:03:30] 2026-03-20 05:02:30,442 | INFO     | adding to output.list: log.49178662._000118.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d3/10/log.49178662._000118.job.log.tg
[2026-03-20 06:03:30] 2026-03-20 05:02:30,443 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-20 06:03:30] 2026-03-20 05:02:30,443 | INFO     | summary of transferred files:
[2026-03-20 06:03:30] 2026-03-20 05:02:30,443 | INFO     |  -- lfn=log.49178662._000118.job.log.tgz.1, status_code=0, status=transferred
[2026-03-20 06:03:30] 2026-03-20 05:02:30,443 | INFO     | stage-out finished correctly
[2026-03-20 06:03:30] 2026-03-20 05:02:30,486 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-20 06:03:30] 2026-03-20 05:02:32,303 | INFO     | time since job start (2954s) is within the limit (345600.0s)
[2026-03-20 06:03:30] 2026-03-20 05:02:32,617 | INFO     | job 7057888361 has state=finished
[2026-03-20 06:03:30] 2026-03-20 05:02:32,617 | INFO     | preparing for final server update for job 7057888361 in state='finished'
[2026-03-20 06:03:30] 2026-03-20 05:02:32,618 | INFO     | reading metadata from: /var/lib/boinc/var/slot216/slots/2/PanDA_Pilot-7057888361/jobReport.json
[2026-03-20 06:03:30] 2026-03-20 05:02:32,619 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot216/slots/2/workernode_map.json
[2026-03-20 06:03:30] 2026-03-20 05:02:32,619 | INFO     | this job has now completed (state=finished)
[2026-03-20 06:03:30] 2026-03-20 05:02:32,619 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-20 06:03:30] 2026-03-20 05:02:32,619 | INFO     | log transfer has been attempted: DONE
[2026-03-20 06:03:30] 2026-03-20 05:02:32,619 | INFO     | job 7057888361 has finished - writing final server update
[2026-03-20 06:03:30] 2026-03-20 05:02:32,620 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3281177/.job.ad'
[2026-03-20 06:03:30] 2026-03-20 05:02:32,620 | INFO     | total number of processed events: 400 (read)
[2026-03-20 06:03:30] 2026-03-20 05:02:32,636 | INFO     | using path: /var/lib/boinc/var/slot216/slots/2/PanDA_Pilot-7057888361/memory_monitor_summary.json (trf name=prmon)
[2026-03-20 06:03:30] 2026-03-20 05:02:32,636 | INFO     | extracted standard info from prmon json
[2026-03-20 06:03:30] 2026-03-20 05:02:32,636 | INFO     | extracted standard memory fields from prmon json
[2026-03-20 06:03:30] 2026-03-20 05:02:32,636 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-20 06:03:30] 2026-03-20 05:02:32,636 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-20 06:03:30] 2026-03-20 05:02:32,636 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-20 06:03:30] 2026-03-20 05:02:32,637 | INFO     | fitting pss+swap vs Time
[2026-03-20 06:03:30] 2026-03-20 05:02:32,637 | INFO     | sum of square deviations: 21358540.0
[2026-03-20 06:03:30] 2026-03-20 05:02:32,637 | INFO     | sum of deviations: 497103640.0
[2026-03-20 06:03:30] 2026-03-20 05:02:32,637 | INFO     | mean x: 1773981544.0
[2026-03-20 06:03:30] 2026-03-20 05:02:32,637 | INFO     | mean y: 2692497.951219512
[2026-03-20 06:03:30] 2026-03-20 05:02:32,637 | INFO     | intersect: -41285367585.51985
[2026-03-20 06:03:30] 2026-03-20 05:02:32,637 | INFO     | chi2: 0.0006174829720367361
[2026-03-20 06:03:30] 2026-03-20 05:02:32,637 | INFO     | current memory leak: 23.27 B/s (using 41 data points, chi2=0.00)
[2026-03-20 06:03:30] 2026-03-20 05:02:32,637 | INFO     | could have reported an average CPU frequency of 3626 MHz (5 samples)
[2026-03-20 06:03:30] 2026-03-20 05:02:32,637 | INFO     | ..............................
[2026-03-20 06:03:30] 2026-03-20 05:02:32,637 | INFO     | . Timing measurements:
[2026-03-20 06:03:30] 2026-03-20 05:02:32,637 | INFO     | . get job = 0 s
[2026-03-20 06:03:30] 2026-03-20 05:02:32,637 | INFO     | . initial setup = 3 s
[2026-03-20 06:03:30] 2026-03-20 05:02:32,637 | INFO     | . payload setup = 5 s
[2026-03-20 06:03:30] 2026-03-20 05:02:32,638 | INFO     | . stage-in = 0 s
[2026-03-20 06:03:30] 2026-03-20 05:02:32,638 | INFO     | . payload execution = 2930 s
[2026-03-20 06:03:30] 2026-03-20 05:02:32,638 | INFO     | . stage-out = 0 s
[2026-03-20 06:03:30] 2026-03-20 05:02:32,638 | INFO     | . log creation = 0 s
[2026-03-20 06:03:30] 2026-03-20 05:02:32,638 | INFO     | ..............................
[2026-03-20 06:03:30] 2026-03-20 05:02:32,678 | INFO     | 
[2026-03-20 06:03:30] 2026-03-20 05:02:32,679 | INFO     | job summary report
[2026-03-20 06:03:30] 2026-03-20 05:02:32,679 | INFO     | --------------------------------------------------
[2026-03-20 06:03:30] 2026-03-20 05:02:32,679 | INFO     | PanDA job id: 7057888361
[2026-03-20 06:03:30] 2026-03-20 05:02:32,679 | INFO     | task id: 49178662
[2026-03-20 06:03:30] 2026-03-20 05:02:32,679 | INFO     | errors: (none)
[2026-03-20 06:03:30] 2026-03-20 05:02:32,679 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-20 06:03:30] 2026-03-20 05:02:32,679 | INFO     | pilot state: finished 
[2026-03-20 06:03:30] 2026-03-20 05:02:32,679 | INFO     | transexitcode: 0
[2026-03-20 06:03:30] 2026-03-20 05:02:32,679 | INFO     | exeerrorcode: 0
[2026-03-20 06:03:30] 2026-03-20 05:02:32,679 | INFO     | exeerrordiag: 
[2026-03-20 06:03:30] 2026-03-20 05:02:32,679 | INFO     | exitcode: 0
[2026-03-20 06:03:30] 2026-03-20 05:02:32,679 | INFO     | exitmsg: OK
[2026-03-20 06:03:30] 2026-03-20 05:02:32,679 | INFO     | cpuconsumptiontime: 31830 s
[2026-03-20 06:03:30] 2026-03-20 05:02:32,679 | INFO     | nevents: 400
[2026-03-20 06:03:30] 2026-03-20 05:02:32,679 | INFO     | neventsw: 0
[2026-03-20 06:03:30] 2026-03-20 05:02:32,679 | INFO     | pid: 3341932
[2026-03-20 06:03:30] 2026-03-20 05:02:32,679 | INFO     | pgrp: 3341932
[2026-03-20 06:03:30] 2026-03-20 05:02:32,679 | INFO     | corecount: 12
[2026-03-20 06:03:30] 2026-03-20 05:02:32,679 | INFO     | event service: False
[2026-03-20 06:03:30] 2026-03-20 05:02:32,679 | INFO     | sizes: {0: 2280099, 1: 2280361, 11: 2280389, 2939: 2305800, 2941: 2314878, 2943: 2315048}
[2026-03-20 06:03:30] 2026-03-20 05:02:32,679 | INFO     | --------------------------------------------------
[2026-03-20 06:03:30] 2026-03-20 05:02:32,679 | INFO     | 
[2026-03-20 06:03:30] 2026-03-20 05:02:32,679 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot216/slots/2
[2026-03-20 06:03:30] 2026-03-20 05:02:32,694 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-20 06:03:30] 2026-03-20 05:02:32,694 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-20 06:03:30] 2026-03-20 05:02:32,694 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-20 06:03:30] 2026-03-20 05:02:32,694 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-20 06:03:30] 2026-03-20 05:02:32,694 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-20 06:03:30] 2026-03-20 05:02:32,694 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-20 06:03:30] 2026-03-20 05:02:32,694 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-20 06:03:30] 2026-03-20 05:02:32,694 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-20 06:03:30] 2026-03-20 05:02:32,694 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-20 06:03:30] 2026-03-20 05:02:32,694 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-20 06:03:30] 2026-03-20 05:02:32,694 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-20 06:03:30] 2026-03-20 05:02:32,694 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-20 06:03:30] 2026-03-20 05:02:32,694 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-20 06:03:30] 2026-03-20 05:02:32,694 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-20 06:03:30] 2026-03-20 05:02:32,695 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-20 06:03:30] 2026-03-20 05:02:32,695 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-20 06:03:30] 2026-03-20 05:02:32,695 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-20 06:03:30] 2026-03-20 05:02:32,695 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-20 06:03:30] 2026-03-20 05:02:32,695 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-20 06:03:30] 2026-03-20 05:02:32,695 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-20 06:03:30] 2026-03-20 05:02:32,695 | INFO     | job 7057888361 has completed (purged errors)
[2026-03-20 06:03:30] 2026-03-20 05:02:32,695 | INFO     | overall cleanup function is called
[2026-03-20 06:03:30] 2026-03-20 05:02:33,685 | WARNING  | process 3341932 can no longer be monitored (due to stat problems) - aborting
[2026-03-20 06:03:30] 2026-03-20 05:02:33,698 | INFO     | --- collectZombieJob: --- 10, [3341932]
[2026-03-20 06:03:30] 2026-03-20 05:02:33,698 | INFO     | zombie collector waiting for pid 3341932
[2026-03-20 06:03:30] 2026-03-20 05:02:33,698 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-20 06:03:30] 2026-03-20 05:02:33,698 | INFO     | collected zombie processes
[2026-03-20 06:03:30] 2026-03-20 05:02:33,698 | INFO     | will attempt to kill all subprocesses of pid=3341932
[2026-03-20 06:03:30] 2026-03-20 05:02:34,522 | INFO     | using path: /var/lib/boinc/var/slot216/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-03-20 06:03:30] 2026-03-20 05:02:34,522 | INFO     | using path: /var/lib/boinc/var/slot216/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-03-20 06:03:30] 2026-03-20 05:02:34,522 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-20 06:03:30] 2026-03-20 05:02:34,523 | WARNING  | maxPSS not found in memory monitor output
[2026-03-20 06:03:30] 2026-03-20 05:02:34,523 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot216/slots/2/PanDA_Pilot-7057888361/payload.stdout) since it has not been created yet
[2026-03-20 06:03:30] 2026-03-20 05:02:34,523 | INFO     | executing command: df -mP /var/lib/boinc/var/slot216/slots/2
[2026-03-20 06:03:30] 2026-03-20 05:02:34,537 | INFO     | sufficient remaining disk space (212583055360 B)
[2026-03-20 06:03:30] 2026-03-20 05:02:34,538 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-20 06:03:30] 2026-03-20 05:02:34,538 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot216/slots/2/PanDA_Pilot-7057888361/HITS.49178662._000118.pool.root.1 since it does not exist
[2026-03-20 06:03:30] 2026-03-20 05:02:34,822 | INFO     | process IDs to be killed: [3341932] (in reverse order)
[2026-03-20 06:03:30] 2026-03-20 05:02:34,956 | WARNING  | found no corresponding commands to process id(s)
[2026-03-20 06:03:30] 2026-03-20 05:02:34,956 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-20 06:03:30] 2026-03-20 05:02:35,019 | INFO     | did not find any defunct processes belonging to 3341932
[2026-03-20 06:03:30] 2026-03-20 05:02:35,080 | INFO     | did not find any defunct processes belonging to 3341932
[2026-03-20 06:03:30] 2026-03-20 05:02:35,081 | INFO     | ready for new job
[2026-03-20 06:03:30] 2026-03-20 05:02:35,081 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-20 06:03:30] 2026-03-20 05:02:35,082 | INFO     | **************************************
[2026-03-20 06:03:30] 2026-03-20 05:02:35,082 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-20 06:03:30] 2026-03-20 05:02:35,082 | INFO     | **************************************
[2026-03-20 06:03:30] 2026-03-20 05:02:35,082 | INFO     | 
[2026-03-20 06:03:30] 2026-03-20 05:02:35,091 | INFO     | architecture information:
[2026-03-20 06:03:30] 2026-03-20 05:02:35,091 | INFO     | executing command: cat /etc/os-release
[2026-03-20 06:03:30] 2026-03-20 05:02:35,103 | INFO     | cat /etc/os-release:
[2026-03-20 06:03:30] NAME="CentOS Linux"
[2026-03-20 06:03:30] VERSION="7 (Core)"
[2026-03-20 06:03:30] ID="centos"
[2026-03-20 06:03:30] ID_LIKE="rhel fedora"
[2026-03-20 06:03:30] VERSION_ID="7"
[2026-03-20 06:03:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-20 06:03:30] ANSI_COLOR="0;31"
[2026-03-20 06:03:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-20 06:03:30] HOME_URL="https://www.centos.org/"
[2026-03-20 06:03:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-20 06:03:30] 
[2026-03-20 06:03:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-20 06:03:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-20 06:03:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-20 06:03:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-20 06:03:30] 
[2026-03-20 06:03:30] 2026-03-20 05:02:35,104 | INFO     | **************************************
[2026-03-20 06:03:30] 2026-03-20 05:02:35,157 | INFO     | number of running child processes to parent process 3341932: 1
[2026-03-20 06:03:30] 2026-03-20 05:02:35,157 | INFO     | maximum number of monitored processes: 6
[2026-03-20 06:03:30] 2026-03-20 05:02:35,157 | INFO     | aborting job monitoring since job object (job id=7057888361) has expired
[2026-03-20 06:03:30] 2026-03-20 05:02:35,607 | INFO     | executing command: df -mP /var/lib/boinc/var/slot216/slots/2
[2026-03-20 06:03:30] 2026-03-20 05:02:35,621 | INFO     | sufficient remaining disk space (212582006784 B)
[2026-03-20 06:03:30] 2026-03-20 05:02:35,621 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-20 06:03:30] 2026-03-20 05:02:35,621 | INFO     | current server update state: UPDATING_FINAL
[2026-03-20 06:03:30] 2026-03-20 05:02:35,621 | INFO     | update_server=False
[2026-03-20 06:03:30] 2026-03-20 05:02:35,621 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-20 06:03:30] 2026-03-20 05:02:35,621 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-20 06:03:30] 2026-03-20 05:02:35,622 | INFO     | will abort loop
[2026-03-20 06:03:30] 2026-03-20 05:02:35,985 | INFO     | all data control threads have been joined
[2026-03-20 06:03:30] 2026-03-20 05:02:35,995 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-20 06:03:30] 2026-03-20 05:02:36,351 | INFO     | all job control threads have been joined
[2026-03-20 06:03:30] 2026-03-20 05:02:36,536 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-20 06:03:30] 2026-03-20 05:02:36,626 | INFO     | [job] retrieve thread has finished
[2026-03-20 06:03:30] 2026-03-20 05:02:36,627 | INFO     | [job] job monitor thread has finished
[2026-03-20 06:03:30] 2026-03-20 05:02:36,693 | INFO     | [job] validate thread has finished
[2026-03-20 06:03:30] 2026-03-20 05:02:36,709 | INFO     | [payload] failed_post thread has finished
[2026-03-20 06:03:30] 2026-03-20 05:02:36,769 | INFO     | [job] create_data_payload thread has finished
[2026-03-20 06:03:30] 2026-03-20 05:02:36,832 | INFO     | [payload] validate_pre thread has finished
[2026-03-20 06:03:30] 2026-03-20 05:02:36,991 | INFO     | [data] control thread has finished
[2026-03-20 06:03:30] 2026-03-20 05:02:37,000 | INFO     | [data] copytool_in thread has finished
[2026-03-20 06:03:30] 2026-03-20 05:02:37,063 | INFO     | all payload control threads have been joined
[2026-03-20 06:03:30] 2026-03-20 05:02:37,069 | INFO     | [payload] execute_payloads thread has finished
[2026-03-20 06:03:30] 2026-03-20 05:02:37,271 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-20 06:03:30] 2026-03-20 05:02:37,356 | INFO     | [job] control thread has finished
[2026-03-20 06:03:30] 2026-03-20 05:02:37,618 | INFO     | [payload] validate_post thread has finished
[2026-03-20 06:03:30] 2026-03-20 05:02:37,689 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-20 06:03:30] 2026-03-20 05:02:38,000 | INFO     | [data] copytool_out thread has finished
[2026-03-20 06:03:30] 2026-03-20 05:02:38,067 | INFO     | [payload] control thread has finished
[2026-03-20 06:03:30] 2026-03-20 05:02:38,695 | INFO     | [job] queue monitor thread has finished
[2026-03-20 06:03:30] 2026-03-20 05:02:40,542 | INFO     | [data] queue_monitor thread has finished
[2026-03-20 06:03:30] 2026-03-20 05:03:05,785 | INFO     | PID=3336133 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-20 06:03:30] 2026-03-20 05:03:05,786 | INFO     | .. there are 7 such processes running
[2026-03-20 06:03:30] 2026-03-20 05:03:05,786 | INFO     | found 0 job(s) in 20 queues
[2026-03-20 06:03:30] 2026-03-20 05:03:05,786 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-20 06:03:30] 2026-03-20 05:03:05,786 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-20 06:03:30] 2026-03-20 05:03:21,932 | INFO     | [monitor] cgroup control has ended
[2026-03-20 06:03:30] 2026-03-20 05:03:23,062 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23412643014464)>', '<ExcThread(monitor, started 23412336490240)>']
[2026-03-20 06:03:30] 2026-03-20 05:03:23,876 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-20 06:03:30] 2026-03-20 05:03:23,876 | INFO     | [monitor] control thread has ended
[2026-03-20 06:03:30] 2026-03-20 05:03:28,088 | INFO     | all workflow threads have been joined
[2026-03-20 06:03:30] 2026-03-20 05:03:28,088 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-20 06:03:30] 2026-03-20 05:03:28,088 | INFO     | traces error code: 0
[2026-03-20 06:03:30] 2026-03-20 05:03:28,088 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-20 06:03:30] 2026-03-20 05:03:28,180 [wrapper] ==== pilot stdout END ====
[2026-03-20 06:03:30] 2026-03-20 05:03:28,182 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-20 06:03:30] 2026-03-20 05:03:28,184 [wrapper] pilotpid: 3336133
[2026-03-20 06:03:30] 2026-03-20 05:03:28,186 [wrapper] Pilot exit status: 0
[2026-03-20 06:03:30] 2026-03-20 05:03:28,193 [wrapper] pandaids: 7057888361
[2026-03-20 06:03:30] 2026-03-20 05:03:28,287 [wrapper] cleanup supervisor_pilot 3487061 3336134
[2026-03-20 06:03:30] 2026-03-20 05:03:28,289 [wrapper] Test setup, not cleaning
[2026-03-20 06:03:30] 2026-03-20 05:03:28,291 [wrapper] apfmon messages muted
[2026-03-20 06:03:30] 2026-03-20 05:03:28,293 [wrapper] ==== wrapper stdout END ====
[2026-03-20 06:03:30] 2026-03-20 05:03:28,295 [wrapper] ==== wrapper stderr END ====
[2026-03-20 06:03:30]  *** Error codes and diagnostics ***
[2026-03-20 06:03:30]     "exeErrorCode": 0,
[2026-03-20 06:03:30]     "exeErrorDiag": "",
[2026-03-20 06:03:30]     "pilotErrorCode": 0,
[2026-03-20 06:03:30]     "pilotErrorDiag": "",
[2026-03-20 06:03:30]  *** Listing of results directory ***
[2026-03-20 06:03:30] total 420088
[2026-03-20 06:03:30] -rw-r--r--. 1 boinc boinc    585013 Mar 18 02:12 pilot3.tar.gz
[2026-03-20 06:03:30] -rwx------. 1 boinc boinc     36322 Mar 18 02:13 runpilot2-wrapper.sh
[2026-03-20 06:03:30] -rw-r--r--. 1 boinc boinc      5111 Mar 18 02:14 queuedata.json
[2026-03-20 06:03:30] -rw-r--r--. 1 boinc boinc       100 Mar 20 04:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-20 06:03:30] -rwxr-xr-x. 1 boinc boinc      7986 Mar 20 04:31 run_atlas
[2026-03-20 06:03:30] -rw-r--r--. 1 boinc boinc       105 Mar 20 04:31 job.xml
[2026-03-20 06:03:30] -rw-r--r--. 2 boinc boinc 219523118 Mar 20 05:13 EVNT.49129395._000005.pool.root.1
[2026-03-20 06:03:30] -rw-r--r--. 1 boinc boinc      6711 Mar 20 05:13 init_data.xml
[2026-03-20 06:03:30] -rw-r--r--. 2 boinc boinc     15845 Mar 20 05:13 start_atlas.sh
[2026-03-20 06:03:30] drwxrwx--x. 2 boinc boinc      4096 Mar 20 05:13 shared
[2026-03-20 06:03:30] -rw-r--r--. 2 boinc boinc    597554 Mar 20 05:13 input.tar.gz
[2026-03-20 06:03:30] -rw-r--r--. 1 boinc boinc         0 Mar 20 05:13 boinc_lockfile
[2026-03-20 06:03:30] -rw-r--r--. 1 boinc boinc      2668 Mar 20 05:13 pandaJob.out
[2026-03-20 06:03:30] -rw-------. 1 boinc boinc   1010740 Mar 20 05:13 agis_schedconf.cvmfs.json
[2026-03-20 06:03:30] -rw-------. 1 boinc boinc   1511579 Mar 20 05:13 agis_ddmendpoints.agis.ALL.json
[2026-03-20 06:03:30] -rw-------. 1 boinc boinc       444 Mar 20 05:13 workernode_map.json
[2026-03-20 06:03:30] drwx------. 5 boinc boinc      4096 Mar 20 05:13 pilot3
[2026-03-20 06:03:30] -rw-------. 1 boinc boinc 205040377 Mar 20 06:02 HITS.49178662._000118.pool.root.1
[2026-03-20 06:03:30] -rw-------. 1 boinc boinc        95 Mar 20 06:02 pilot_heartbeat.json
[2026-03-20 06:03:30] -rw-r--r--. 1 boinc boinc       529 Mar 20 06:02 boinc_task_state.xml
[2026-03-20 06:03:30] -rw-------. 1 boinc boinc      1029 Mar 20 06:02 memory_monitor_summary.json
[2026-03-20 06:03:30] -rw-------. 1 boinc boinc    368674 Mar 20 06:02 log.49178662._000118.job.log.tgz.1
[2026-03-20 06:03:30] -rw-------. 1 boinc boinc      6352 Mar 20 06:02 heartbeat.json
[2026-03-20 06:03:30] -rw-------. 1 boinc boinc      5120 Mar 20 06:03 pilotlog.txt
[2026-03-20 06:03:30] -rw-------. 1 boinc boinc    459691 Mar 20 06:03 log.49178662._000118.job.log.1
[2026-03-20 06:03:30] -rw-------. 1 boinc boinc       357 Mar 20 06:03 output.list
[2026-03-20 06:03:30] -rw-r--r--. 1 boinc boinc       620 Mar 20 06:03 runtime_log
[2026-03-20 06:03:30] -rw-------. 1 boinc boinc    849920 Mar 20 06:03 result.tar.gz
[2026-03-20 06:03:30] -rw-r--r--. 1 boinc boinc      9223 Mar 20 06:03 runtime_log.err
[2026-03-20 06:03:30] -rw-------. 1 boinc boinc       660 Mar 20 06:03 fAaMDmBeuM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm9E1LDmT2FaMo.diag
[2026-03-20 06:03:30] -rw-r--r--. 1 boinc boinc      8192 Mar 20 06:03 boinc_mmap_file
[2026-03-20 06:03:30] -rw-r--r--. 1 boinc boinc        27 Mar 20 06:03 wrapper_checkpoint.txt
[2026-03-20 06:03:30] -rw-r--r--. 1 boinc boinc     22057 Mar 20 06:03 stderr.txt
[2026-03-20 06:03:30] HITS file was successfully produced:
[2026-03-20 06:03:30] -rw-------. 1 boinc boinc 205040377 Mar 20 06:02 shared/HITS.pool.root.1
[2026-03-20 06:03:30]  *** Contents of shared directory: ***
[2026-03-20 06:03:30] total 416056
[2026-03-20 06:03:30] -rw-r--r--. 2 boinc boinc 219523118 Mar 20 05:13 ATLAS.root_0
[2026-03-20 06:03:30] -rw-r--r--. 2 boinc boinc     15845 Mar 20 05:13 start_atlas.sh
[2026-03-20 06:03:30] -rw-r--r--. 2 boinc boinc    597554 Mar 20 05:13 input.tar.gz
[2026-03-20 06:03:30] -rw-------. 1 boinc boinc 205040377 Mar 20 06:02 HITS.pool.root.1
[2026-03-20 06:03:30] -rw-------. 1 boinc boinc    849920 Mar 20 06:03 result.tar.gz
06:03:32 (3331314): run_atlas exited; CPU time 31925.011356
06:03:32 (3331314): called boinc_finish(0)

</stderr_txt>
]]>

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