Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:25:38 (1203842): wrapper (7.7.26015): starting
06:25:38 (1203842): wrapper: running run_atlas (--nthreads 4)
[2026-03-23 06:25:38] Arguments: --nthreads 4
[2026-03-23 06:25:38] Threads: 4
[2026-03-23 06:25:38] Checking for CVMFS
[2026-03-23 06:25:38] No cvmfs_config command found, will try listing directly
[2026-03-23 06:25:38] CVMFS is ok
[2026-03-23 06:25:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-23 06:25:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-23 06:25:38] Further information can be found at the LHC@home message board.
[2026-03-23 06:25:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-23 06:25:38] Checking for apptainer binary...
[2026-03-23 06:25:38] which: no apptainer in ((null))
[2026-03-23 06:25:38] apptainer is not installed, using version from CVMFS
[2026-03-23 06:25:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-23 06:25:38] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot32/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut09.grid.cesnet.cz
[2026-03-23 06:25:38] apptainer works
[2026-03-23 06:25:38] Set ATHENA_PROC_NUMBER=4
[2026-03-23 06:25:38] Set ATHENA_CORE_NUMBER=4
[2026-03-23 06:25:38] Starting ATLAS job with PandaID=7057905279
[2026-03-23 06:25:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot32/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-23 13:59:54]  *** The last 200 lines of the pilot log: ***
[2026-03-23 13:59:54] 2026-03-23 12:57:43,287 | INFO     | this job has now completed (state=finished)
[2026-03-23 13:59:54] 2026-03-23 12:57:43,287 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-23 13:59:54] 2026-03-23 12:57:43,287 | INFO     | log transfer has been attempted: DONE
[2026-03-23 13:59:54] 2026-03-23 12:57:43,287 | INFO     | job 7057905279 has finished - writing final server update
[2026-03-23 13:59:54] 2026-03-23 12:57:43,288 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2158210/.job.ad'
[2026-03-23 13:59:54] 2026-03-23 12:57:43,288 | INFO     | total number of processed events: 400 (read)
[2026-03-23 13:59:54] 2026-03-23 12:57:43,300 | INFO     | using path: /var/lib/boinc/var/slot32/slots/1/PanDA_Pilot-7057905279/memory_monitor_summary.json (trf name=prmon)
[2026-03-23 13:59:54] 2026-03-23 12:57:43,301 | INFO     | extracted standard info from prmon json
[2026-03-23 13:59:54] 2026-03-23 12:57:43,301 | INFO     | extracted standard memory fields from prmon json
[2026-03-23 13:59:54] 2026-03-23 12:57:43,301 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-23 13:59:54] 2026-03-23 12:57:43,301 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-23 13:59:54] 2026-03-23 12:57:43,301 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-23 13:59:54] 2026-03-23 12:57:43,309 | INFO     | fitting pss+swap vs Time
[2026-03-23 13:59:54] 2026-03-23 12:57:43,310 | INFO     | sum of square deviations: 27140955395.0
[2026-03-23 13:59:54] 2026-03-23 12:57:43,314 | INFO     | sum of deviations: -32657103319.500004
[2026-03-23 13:59:54] 2026-03-23 12:57:43,314 | INFO     | mean x: 1774257104.5
[2026-03-23 13:59:54] 2026-03-23 12:57:43,314 | INFO     | mean y: 2367581.0698198196
[2026-03-23 13:59:54] 2026-03-23 12:57:43,315 | INFO     | intersect: 2137226016.7344577
[2026-03-23 13:59:54] 2026-03-23 12:57:43,315 | INFO     | chi2: 1.4645149005154445
[2026-03-23 13:59:54] 2026-03-23 12:57:43,316 | INFO     | sum of square deviations: 26234315140.0
[2026-03-23 13:59:54] 2026-03-23 12:57:43,320 | INFO     | sum of deviations: -32898698181.000004
[2026-03-23 13:59:54] 2026-03-23 12:57:43,320 | INFO     | mean x: 1774256952.0
[2026-03-23 13:59:54] 2026-03-23 12:57:43,321 | INFO     | mean y: 2367540.706150342
[2026-03-23 13:59:54] 2026-03-23 12:57:43,321 | INFO     | intersect: 2227344394.4144425
[2026-03-23 13:59:54] 2026-03-23 12:57:43,321 | INFO     | chi2: 1.4635912427268627
[2026-03-23 13:59:54] 2026-03-23 12:57:43,321 | INFO     | current chi2=1.4635912427268627 (change=0.0630691970601833 %)
[2026-03-23 13:59:54] 2026-03-23 12:57:43,321 | INFO     | right removable region: 438
[2026-03-23 13:59:54] 2026-03-23 12:57:43,322 | INFO     | sum of square deviations: 26234315140.0
[2026-03-23 13:59:54] 2026-03-23 12:57:43,327 | INFO     | sum of deviations: -82141181445.00003
[2026-03-23 13:59:54] 2026-03-23 12:57:43,327 | INFO     | mean x: 1774257257.0
[2026-03-23 13:59:54] 2026-03-23 12:57:43,327 | INFO     | mean y: 2375842.708428246
[2026-03-23 13:59:54] 2026-03-23 12:57:43,327 | INFO     | intersect: 5557679516.526576
[2026-03-23 13:59:54] 2026-03-23 12:57:43,328 | INFO     | chi2: 0.20983265415007643
[2026-03-23 13:59:54] 2026-03-23 12:57:43,328 | INFO     | current chi2=0.20983265415007643 (change=85.67220763160385 %)
[2026-03-23 13:59:54] 2026-03-23 12:57:43,328 | INFO     | sum of square deviations: 25348093872.5
[2026-03-23 13:59:54] 2026-03-23 12:57:43,333 | INFO     | sum of deviations: -72435697876.99997
[2026-03-23 13:59:54] 2026-03-23 12:57:43,333 | INFO     | mean x: 1774257409.5
[2026-03-23 13:59:54] 2026-03-23 12:57:43,333 | INFO     | mean y: 2374172.33640553
[2026-03-23 13:59:54] 2026-03-23 12:57:43,333 | INFO     | intersect: 5072561079.3685255
[2026-03-23 13:59:54] 2026-03-23 12:57:43,334 | INFO     | chi2: 0.20069401780230536
[2026-03-23 13:59:54] 2026-03-23 12:57:43,334 | INFO     | current chi2=0.20069401780230536 (change=4.355202189471871 %)
[2026-03-23 13:59:54] 2026-03-23 12:57:43,334 | INFO     | left removable region: 20
[2026-03-23 13:59:54] 2026-03-23 12:57:43,335 | INFO     | sum of square deviations: 22646692524.5
[2026-03-23 13:59:54] 2026-03-23 12:57:43,339 | INFO     | sum of deviations: -41388969944.0
[2026-03-23 13:59:54] 2026-03-23 12:57:43,339 | INFO     | mean x: 1774257531.5
[2026-03-23 13:59:54] 2026-03-23 12:57:43,339 | INFO     | mean y: 2368599.3062200956
[2026-03-23 13:59:54] 2026-03-23 12:57:43,339 | INFO     | intersect: 3244991846.1545124
[2026-03-23 13:59:54] 2026-03-23 12:57:43,340 | INFO     | chi2: 0.11858137530576676
[2026-03-23 13:59:54] 2026-03-23 12:57:43,340 | INFO     | current memory leak: -1.83 B/s (using 418 data points, chi2=0.12)
[2026-03-23 13:59:54] 2026-03-23 12:57:43,345 | INFO     | could have reported an average CPU frequency of 2464 MHz (18 samples)
[2026-03-23 13:59:54] 2026-03-23 12:57:43,354 | INFO     | ..............................
[2026-03-23 13:59:54] 2026-03-23 12:57:43,354 | INFO     | . Timing measurements:
[2026-03-23 13:59:54] 2026-03-23 12:57:43,354 | INFO     | . get job = 0 s
[2026-03-23 13:59:54] 2026-03-23 12:57:43,354 | INFO     | . initial setup = 7 s
[2026-03-23 13:59:54] 2026-03-23 12:57:43,354 | INFO     | . payload setup = 13 s
[2026-03-23 13:59:54] 2026-03-23 12:57:43,355 | INFO     | . stage-in = 0 s
[2026-03-23 13:59:54] 2026-03-23 12:57:43,355 | INFO     | . payload execution = 27070 s
[2026-03-23 13:59:54] 2026-03-23 12:57:43,355 | INFO     | . stage-out = 1 s
[2026-03-23 13:59:54] 2026-03-23 12:57:43,355 | INFO     | . log creation = 0 s
[2026-03-23 13:59:54] 2026-03-23 12:57:43,355 | INFO     | ..............................
[2026-03-23 13:59:54] 2026-03-23 12:57:43,485 | INFO     | 
[2026-03-23 13:59:54] 2026-03-23 12:57:43,485 | INFO     | job summary report
[2026-03-23 13:59:54] 2026-03-23 12:57:43,486 | INFO     | --------------------------------------------------
[2026-03-23 13:59:54] 2026-03-23 12:57:43,486 | INFO     | PanDA job id: 7057905279
[2026-03-23 13:59:54] 2026-03-23 12:57:43,486 | INFO     | task id: 49176497
[2026-03-23 13:59:54] 2026-03-23 12:57:43,486 | INFO     | errors: (none)
[2026-03-23 13:59:54] 2026-03-23 12:57:43,486 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-23 13:59:54] 2026-03-23 12:57:43,486 | INFO     | pilot state: finished 
[2026-03-23 13:59:54] 2026-03-23 12:57:43,486 | INFO     | transexitcode: 0
[2026-03-23 13:59:54] 2026-03-23 12:57:43,486 | INFO     | exeerrorcode: 0
[2026-03-23 13:59:54] 2026-03-23 12:57:43,486 | INFO     | exeerrordiag: 
[2026-03-23 13:59:54] 2026-03-23 12:57:43,486 | INFO     | exitcode: 0
[2026-03-23 13:59:54] 2026-03-23 12:57:43,486 | INFO     | exitmsg: OK
[2026-03-23 13:59:54] 2026-03-23 12:57:43,487 | INFO     | cpuconsumptiontime: 105244 s
[2026-03-23 13:59:54] 2026-03-23 12:57:43,487 | INFO     | nevents: 400
[2026-03-23 13:59:54] 2026-03-23 12:57:43,487 | INFO     | neventsw: 0
[2026-03-23 13:59:54] 2026-03-23 12:57:43,487 | INFO     | pid: 1213157
[2026-03-23 13:59:54] 2026-03-23 12:57:43,487 | INFO     | pgrp: 1213157
[2026-03-23 13:59:54] 2026-03-23 12:57:43,487 | INFO     | corecount: 4
[2026-03-23 13:59:54] 2026-03-23 12:57:43,487 | INFO     | event service: False
[2026-03-23 13:59:54] 2026-03-23 12:57:43,487 | INFO     | sizes: {0: 2280036, 1: 2280242, 11: 2280270, 27087: 2316745, 27088: 2325765, 27091: 2325821, 27092: 2326143}
[2026-03-23 13:59:54] 2026-03-23 12:57:43,487 | INFO     | --------------------------------------------------
[2026-03-23 13:59:54] 2026-03-23 12:57:43,487 | INFO     | 
[2026-03-23 13:59:54] 2026-03-23 12:57:43,487 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot32/slots/1
[2026-03-23 13:59:54] 2026-03-23 12:57:43,509 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-23 13:59:54] 2026-03-23 12:57:43,509 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-23 13:59:54] 2026-03-23 12:57:43,509 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-23 13:59:54] 2026-03-23 12:57:43,509 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-23 13:59:54] 2026-03-23 12:57:43,509 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-23 13:59:54] 2026-03-23 12:57:43,510 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-23 13:59:54] 2026-03-23 12:57:43,510 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-23 13:59:54] 2026-03-23 12:57:43,510 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-23 13:59:54] 2026-03-23 12:57:43,510 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-23 13:59:54] 2026-03-23 12:57:43,510 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-23 13:59:54] 2026-03-23 12:57:43,510 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-23 13:59:54] 2026-03-23 12:57:43,510 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-23 13:59:54] 2026-03-23 12:57:43,510 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-23 13:59:54] 2026-03-23 12:57:43,510 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-23 13:59:54] 2026-03-23 12:57:43,510 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-23 13:59:54] 2026-03-23 12:57:43,510 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-23 13:59:54] 2026-03-23 12:57:43,510 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-23 13:59:54] 2026-03-23 12:57:43,511 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-23 13:59:54] 2026-03-23 12:57:43,511 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-23 13:59:54] 2026-03-23 12:57:43,511 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-23 13:59:54] 2026-03-23 12:57:43,511 | INFO     | job 7057905279 has completed (purged errors)
[2026-03-23 13:59:54] 2026-03-23 12:57:43,511 | INFO     | overall cleanup function is called
[2026-03-23 13:59:54] 2026-03-23 12:57:44,519 | INFO     | --- collectZombieJob: --- 10, [1213157]
[2026-03-23 13:59:54] 2026-03-23 12:57:44,520 | INFO     | zombie collector waiting for pid 1213157
[2026-03-23 13:59:54] 2026-03-23 12:57:44,520 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-23 13:59:54] 2026-03-23 12:57:44,520 | INFO     | collected zombie processes
[2026-03-23 13:59:54] 2026-03-23 12:57:44,520 | INFO     | will attempt to kill all subprocesses of pid=1213157
[2026-03-23 13:59:54] 2026-03-23 12:57:45,416 | INFO     | process IDs to be killed: [1213157] (in reverse order)
[2026-03-23 13:59:54] 2026-03-23 12:57:45,444 | WARNING  | process 1213157 can no longer be monitored (due to stat problems) - aborting
[2026-03-23 13:59:54] 2026-03-23 12:57:45,546 | WARNING  | found no corresponding commands to process id(s)
[2026-03-23 13:59:54] 2026-03-23 12:57:45,546 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-23 13:59:54] 2026-03-23 12:57:45,574 | INFO     | did not find any defunct processes belonging to 1213157
[2026-03-23 13:59:54] 2026-03-23 12:57:45,603 | INFO     | did not find any defunct processes belonging to 1213157
[2026-03-23 13:59:54] 2026-03-23 12:57:45,604 | INFO     | ready for new job
[2026-03-23 13:59:54] 2026-03-23 12:57:45,604 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-23 13:59:54] 2026-03-23 12:57:45,607 | INFO     | **************************************
[2026-03-23 13:59:54] 2026-03-23 12:57:45,608 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-23 13:59:54] 2026-03-23 12:57:45,608 | INFO     | **************************************
[2026-03-23 13:59:54] 2026-03-23 12:57:45,608 | INFO     | 
[2026-03-23 13:59:54] 2026-03-23 12:57:45,613 | INFO     | architecture information:
[2026-03-23 13:59:54] 2026-03-23 12:57:45,613 | INFO     | executing command: cat /etc/os-release
[2026-03-23 13:59:54] 2026-03-23 12:57:45,634 | INFO     | cat /etc/os-release:
[2026-03-23 13:59:54] NAME="CentOS Linux"
[2026-03-23 13:59:54] VERSION="7 (Core)"
[2026-03-23 13:59:54] ID="centos"
[2026-03-23 13:59:54] ID_LIKE="rhel fedora"
[2026-03-23 13:59:54] VERSION_ID="7"
[2026-03-23 13:59:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-23 13:59:54] ANSI_COLOR="0;31"
[2026-03-23 13:59:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-23 13:59:54] HOME_URL="https://www.centos.org/"
[2026-03-23 13:59:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-23 13:59:54] 
[2026-03-23 13:59:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-23 13:59:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-23 13:59:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-23 13:59:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-23 13:59:54] 
[2026-03-23 13:59:54] 2026-03-23 12:57:45,634 | INFO     | **************************************
[2026-03-23 13:59:54] 2026-03-23 12:57:45,792 | INFO     | using path: /var/lib/boinc/var/slot32/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-03-23 13:59:54] 2026-03-23 12:57:46,137 | INFO     | executing command: df -mP /var/lib/boinc/var/slot32/slots/1
[2026-03-23 13:59:54] 2026-03-23 12:57:46,157 | INFO     | sufficient remaining disk space (26979860480 B)
[2026-03-23 13:59:54] 2026-03-23 12:57:46,158 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-23 13:59:54] 2026-03-23 12:57:46,158 | INFO     | current server update state: UPDATING_FINAL
[2026-03-23 13:59:54] 2026-03-23 12:57:46,158 | INFO     | update_server=False
[2026-03-23 13:59:54] 2026-03-23 12:57:46,158 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-23 13:59:54] 2026-03-23 12:57:46,182 | INFO     | number of running child processes to parent process 1213157: 1
[2026-03-23 13:59:54] 2026-03-23 12:57:46,183 | INFO     | maximum number of monitored processes: 6
[2026-03-23 13:59:54] 2026-03-23 12:57:46,183 | INFO     | aborting job monitoring since job object (job id=7057905279) has expired
[2026-03-23 13:59:54] 2026-03-23 12:57:46,183 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-23 13:59:54] 2026-03-23 12:57:46,183 | INFO     | will abort loop
[2026-03-23 13:59:54] 2026-03-23 12:57:46,671 | INFO     | all payload control threads have been joined
[2026-03-23 13:59:54] 2026-03-23 12:57:46,778 | INFO     | all data control threads have been joined
[2026-03-23 13:59:54] 2026-03-23 12:57:47,164 | INFO     | [job] retrieve thread has finished
[2026-03-23 13:59:54] 2026-03-23 12:57:47,188 | INFO     | [job] job monitor thread has finished
[2026-03-23 13:59:54] 2026-03-23 12:57:47,196 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-23 13:59:54] 2026-03-23 12:57:47,392 | INFO     | all job control threads have been joined
[2026-03-23 13:59:54] 2026-03-23 12:57:47,677 | INFO     | [payload] control thread has finished
[2026-03-23 13:59:54] 2026-03-23 12:57:47,783 | INFO     | [data] control thread has finished
[2026-03-23 13:59:54] 2026-03-23 12:57:47,828 | INFO     | [payload] execute_payloads thread has finished
[2026-03-23 13:59:54] 2026-03-23 12:57:47,979 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-23 13:59:54] 2026-03-23 12:57:48,099 | INFO     | [job] validate thread has finished
[2026-03-23 13:59:54] 2026-03-23 12:57:48,258 | INFO     | [payload] failed_post thread has finished
[2026-03-23 13:59:54] 2026-03-23 12:57:48,277 | INFO     | [payload] validate_pre thread has finished
[2026-03-23 13:59:54] 2026-03-23 12:57:48,396 | INFO     | [job] control thread has finished
[2026-03-23 13:59:54] 2026-03-23 12:57:48,494 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-23 13:59:54] 2026-03-23 12:57:48,522 | INFO     | [payload] validate_post thread has finished
[2026-03-23 13:59:54] 2026-03-23 12:57:48,525 | INFO     | [job] create_data_payload thread has finished
[2026-03-23 13:59:54] 2026-03-23 12:57:48,573 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-23 13:59:54] 2026-03-23 12:57:48,613 | INFO     | [data] copytool_in thread has finished
[2026-03-23 13:59:54] 2026-03-23 12:57:49,201 | INFO     | [data] copytool_out thread has finished
[2026-03-23 13:59:54] 2026-03-23 12:57:49,498 | INFO     | [job] queue monitor thread has finished
[2026-03-23 13:59:54] 2026-03-23 12:57:51,985 | INFO     | [data] queue_monitor thread has finished
[2026-03-23 13:59:54] 2026-03-23 12:58:16,215 | INFO     | PID=1207948 has CPU usage=7.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-23 13:59:54] 2026-03-23 12:58:16,215 | INFO     | .. there are 11 such processes running
[2026-03-23 13:59:54] 2026-03-23 12:58:16,215 | INFO     | found 0 job(s) in 20 queues
[2026-03-23 13:59:54] 2026-03-23 12:58:16,216 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-23 13:59:54] 2026-03-23 12:58:16,216 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-23 13:59:54] 2026-03-23 12:58:43,805 | INFO     | [monitor] cgroup control has ended
[2026-03-23 13:59:54] 2026-03-23 12:58:45,901 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22716685084480)>', '<ExcThread(monitor, started 22716437755648)>']
[2026-03-23 13:59:54] 2026-03-23 12:58:46,361 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-23 13:59:54] 2026-03-23 12:58:46,361 | INFO     | [monitor] control thread has ended
[2026-03-23 13:59:54] 2026-03-23 12:58:50,912 | INFO     | all workflow threads have been joined
[2026-03-23 13:59:54] 2026-03-23 12:58:50,913 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-23 13:59:54] 2026-03-23 12:58:50,913 | INFO     | traces error code: 0
[2026-03-23 13:59:54] 2026-03-23 12:58:50,913 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-23 13:59:54] 2026-03-23 12:58:51,057 [wrapper] ==== pilot stdout END ====
[2026-03-23 13:59:54] 2026-03-23 12:58:51,061 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-23 13:59:54] 2026-03-23 12:58:51,064 [wrapper] pilotpid: 1207948
[2026-03-23 13:59:54] 2026-03-23 12:58:51,067 [wrapper] Pilot exit status: 0
[2026-03-23 13:59:54] 2026-03-23 12:58:51,079 [wrapper] pandaids: 7057905279
[2026-03-23 13:59:54] 2026-03-23 12:58:51,161 [wrapper] cleanup supervisor_pilot 1595081 1207949
[2026-03-23 13:59:54] 2026-03-23 12:58:51,164 [wrapper] Test setup, not cleaning
[2026-03-23 13:59:54] 2026-03-23 12:58:51,167 [wrapper] apfmon messages muted
[2026-03-23 13:59:54] 2026-03-23 12:58:51,171 [wrapper] ==== wrapper stdout END ====
[2026-03-23 13:59:54] 2026-03-23 12:58:51,173 [wrapper] ==== wrapper stderr END ====
[2026-03-23 13:59:54]  *** Error codes and diagnostics ***
[2026-03-23 13:59:54]     "exeErrorCode": 0,
[2026-03-23 13:59:54]     "exeErrorDiag": "",
[2026-03-23 13:59:54]     "pilotErrorCode": 0,
[2026-03-23 13:59:54]     "pilotErrorDiag": "",
[2026-03-23 13:59:54]  *** Listing of results directory ***
[2026-03-23 13:59:54] total 484772
[2026-03-23 13:59:54] -rw-r--r--. 1 boinc boinc    585013 Mar 18 02:12 pilot3.tar.gz
[2026-03-23 13:59:54] -rwx------. 1 boinc boinc     36322 Mar 18 02:12 runpilot2-wrapper.sh
[2026-03-23 13:59:54] -rw-r--r--. 1 boinc boinc      5111 Mar 18 02:13 queuedata.json
[2026-03-23 13:59:54] -rw-r--r--. 1 boinc boinc       100 Mar 23 06:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-23 13:59:54] -rwxr-xr-x. 1 boinc boinc      7986 Mar 23 06:25 run_atlas
[2026-03-23 13:59:54] -rw-r--r--. 1 boinc boinc       105 Mar 23 06:25 job.xml
[2026-03-23 13:59:54] -rw-r--r--. 1 boinc boinc      6564 Mar 23 06:25 init_data.xml
[2026-03-23 13:59:54] -rw-r--r--. 2 boinc boinc 243719447 Mar 23 06:25 EVNT.49134174._000028.pool.root.1
[2026-03-23 13:59:54] -rw-r--r--. 2 boinc boinc     15845 Mar 23 06:25 start_atlas.sh
[2026-03-23 13:59:54] drwxrwx--x. 2 boinc boinc      4096 Mar 23 06:25 shared
[2026-03-23 13:59:54] -rw-r--r--. 2 boinc boinc    597540 Mar 23 06:25 input.tar.gz
[2026-03-23 13:59:54] -rw-r--r--. 1 boinc boinc         0 Mar 23 06:25 boinc_lockfile
[2026-03-23 13:59:54] -rw-r--r--. 1 boinc boinc      2597 Mar 23 06:25 pandaJob.out
[2026-03-23 13:59:54] -rw-------. 1 boinc boinc   1010679 Mar 23 06:25 agis_schedconf.cvmfs.json
[2026-03-23 13:59:54] -rw-------. 1 boinc boinc       452 Mar 23 06:25 workernode_map.json
[2026-03-23 13:59:54] drwx------. 5 boinc boinc      4096 Mar 23 06:25 pilot3
[2026-03-23 13:59:54] -rw-------. 1 boinc boinc 240050568 Mar 23 13:56 HITS.49176497._000689.pool.root.1
[2026-03-23 13:59:54] -rw-r--r--. 1 boinc boinc       531 Mar 23 13:56 boinc_task_state.xml
[2026-03-23 13:59:54] -rw-------. 1 boinc boinc      1046 Mar 23 13:57 memory_monitor_summary.json
[2026-03-23 13:59:54] -rw-------. 1 boinc boinc   1511579 Mar 23 13:57 agis_ddmendpoints.agis.ALL.json
[2026-03-23 13:59:54] -rw-------. 1 boinc boinc    575758 Mar 23 13:57 log.49176497._000689.job.log.tgz.1
[2026-03-23 13:59:54] -rw-------. 1 boinc boinc      6399 Mar 23 13:57 heartbeat.json
[2026-03-23 13:59:54] -rw-------. 1 boinc boinc        95 Mar 23 13:57 pilot_heartbeat.json
[2026-03-23 13:59:54] -rw-------. 1 boinc boinc      5247 Mar 23 13:58 pilotlog.txt
[2026-03-23 13:59:54] -rw-------. 1 boinc boinc   3773879 Mar 23 13:58 log.49176497._000689.job.log.1
[2026-03-23 13:59:54] -rw-------. 1 boinc boinc       357 Mar 23 13:58 output.list
[2026-03-23 13:59:54] -rw-r--r--. 1 boinc boinc       620 Mar 23 13:58 runtime_log
[2026-03-23 13:59:54] -rw-------. 1 boinc boinc   4362240 Mar 23 13:58 result.tar.gz
[2026-03-23 13:59:54] -rw-r--r--. 1 boinc boinc      9205 Mar 23 13:58 runtime_log.err
[2026-03-23 13:59:54] -rw-------. 1 boinc boinc       667 Mar 23 13:58 qyULDm2duM9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm8D1LDmZn0E8m.diag
[2026-03-23 13:59:54] -rw-r--r--. 1 boinc boinc        29 Mar 23 13:59 wrapper_checkpoint.txt
[2026-03-23 13:59:54] -rw-r--r--. 1 boinc boinc      8192 Mar 23 13:59 boinc_mmap_file
[2026-03-23 13:59:54] -rw-r--r--. 1 boinc boinc     21142 Mar 23 13:59 stderr.txt
[2026-03-23 13:59:54] HITS file was successfully produced:
[2026-03-23 13:59:54] -rw-------. 1 boinc boinc 240050568 Mar 23 13:56 shared/HITS.pool.root.1
[2026-03-23 13:59:54]  *** Contents of shared directory: ***
[2026-03-23 13:59:54] total 477304
[2026-03-23 13:59:54] -rw-r--r--. 2 boinc boinc 243719447 Mar 23 06:25 ATLAS.root_0
[2026-03-23 13:59:54] -rw-r--r--. 2 boinc boinc     15845 Mar 23 06:25 start_atlas.sh
[2026-03-23 13:59:54] -rw-r--r--. 2 boinc boinc    597540 Mar 23 06:25 input.tar.gz
[2026-03-23 13:59:54] -rw-------. 1 boinc boinc 240050568 Mar 23 13:56 HITS.pool.root.1
[2026-03-23 13:59:54] -rw-------. 1 boinc boinc   4362240 Mar 23 13:58 result.tar.gz
13:59:56 (1203842): run_atlas exited; CPU time 106496.066104
13:59:56 (1203842): called boinc_finish(0)

</stderr_txt>
]]>

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